Rmu_sc0009451.1_g000001

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009451.1
OG0000434
Physical Location & Seq
Forward (+)
1 .. 1547
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009451.1_g000001.1.cds

Sequence Viewer

Length: 621 bp
accaacgtgacttgcggaccaggccatggcataagcattggaagcctcggagggcatcgcgatgaacaacctgtaactggcttcataatcaagaatgtaacattcaataatacgcagaatggtgcaagaatcaagacttggccggcctcttatgccgggcttgtgtcagatatacactatgaggatattaccatggttaatgtcagaaagccgatcattatagaccaagagtactgcccatggaatttgtgcaacaagcagattccttcaaaagttaagatcagtaatgtgagcatcaagaacattaaaggcacgtccacaactccgcatgcgaaagagatgattacttttcaacagtgtcgtcctccgctccaaagggtcgcagtacttatgggtggctacaaccgatgccatagtgcagctactaatttggggtttctggcacttcatggccccatcttcgtcgacctctgccaatcactgatctggtgccgaacatcctcaatcacggatcaccgatctgaggccggtcggagatgggctgcaggtgagagactggagaagagggcctggggaagacgaaggcggagatgggaccggtcggagaagggctgcaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

206

Amino Acids

23.17

Weight (kDa)

9.91

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 536, 606
Acc36I ACCTGC 2 cut(s) 536, 606
AccB1I GGYRCC 1 cut(s) 489
AccB7I CCANNNNNTGG 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 465
AccII CGCG 1 cut(s) 60
AciI CCGC 4 cut(s) 15, 326, 368, 586
AclWI GGATC 1 cut(s) 519
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 244
AfaI GTAC 2 cut(s) 233, 387
AfiI CCNNNNNNNGG 3 cut(s) 26, 77, 523
AgeI ACCGGT 1 cut(s) 597
AgsI TTSAA 3 cut(s) 106, 270, 353
AjiI CACGTC 1 cut(s) 315
AjnI CCWGG 2 cut(s) 19, 569
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 422
AluI AGCT 1 cut(s) 422
Alw26I GTCTC 1 cut(s) 547
AlwI GGATC 1 cut(s) 519
AoxI GGCC 6 cut(s) 22, 140, 144, 451, 525, 567
ApeKI GCWGC 3 cut(s) 419, 542, 612
ApoI RAATTY 1 cut(s) 244
AsiGI ACCGGT 1 cut(s) 597
AspS9I GGNCC 4 cut(s) 17, 452, 567, 595
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 506, 560
AvaII GGWCC 2 cut(s) 17, 595
BanI GGYRCC 1 cut(s) 489
BbsI GAAGAC 1 cut(s) 583
BbvI GCAGC 3 cut(s) 431, 529, 599
BccI CCATC 3 cut(s) 464, 531, 585
BciT130I CCWGG 2 cut(s) 21, 571
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 1 cut(s) 547
BfmI CTRYAG 2 cut(s) 543, 613
BfuAI ACCTGC 2 cut(s) 536, 606
BisI GCNGC 3 cut(s) 420, 543, 613
BlsI GCNGC 3 cut(s) 421, 544, 614
BmcAI AGTACT 2 cut(s) 233, 387
Bme1390I CCNGG 3 cut(s) 21, 157, 571
Bme18I GGWCC 2 cut(s) 17, 595
BmgBI CACGTC 1 cut(s) 315
BmgT120I GGNCC 4 cut(s) 17, 452, 567, 595
BmiI GGNNCC 3 cut(s) 454, 491, 596
BmrFI CCNGG 3 cut(s) 21, 157, 571
BmsI GCATC 3 cut(s) 64, 303, 398
BpiI GAAGAC 1 cut(s) 583
BpmI CTGGAG 1 cut(s) 578
BpuMI CCSGG 1 cut(s) 157
BsaJI CCNNGG 5 cut(s) 25, 46, 192, 239, 570
BsaWI WCCGGW 1 cut(s) 597
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 77, 523
Bse118I RCCGGY 3 cut(s) 142, 527, 597
Bse1I ACTGG 2 cut(s) 82, 561
BseBI CCWGG 2 cut(s) 21, 571
BseDI CCNNGG 5 cut(s) 25, 46, 192, 239, 570
BseGI GGATG 1 cut(s) 497
BseLI CCNNNNNNNGG 3 cut(s) 26, 77, 523
BseMII CTCAG 1 cut(s) 513
BseNI ACTGG 2 cut(s) 82, 561
BseXI GCAGC 3 cut(s) 431, 529, 599
BsgI GTGCAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 60
Bsh1285I CGRYCG 2 cut(s) 532, 602
BshFI GGCC 6 cut(s) 24, 142, 146, 453, 527, 569
BshNI GGYRCC 1 cut(s) 489
BshTI ACCGGT 1 cut(s) 597
BsiEI CGRYCG 2 cut(s) 532, 602
BsiSI CCGG 4 cut(s) 143, 156, 528, 598
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 3 cut(s) 26, 77, 523
BsmAI GTCTC 1 cut(s) 547
BsmFI GGGAC 1 cut(s) 608
BsnI GGCC 6 cut(s) 24, 142, 146, 453, 527, 569
Bsp143I GATC 5 cut(s) 213, 279, 483, 511, 518
Bsp19I CCATGG 3 cut(s) 25, 192, 239
Bsp68I TCGCGA 1 cut(s) 60
BspACI CCGC 4 cut(s) 15, 326, 368, 586
BspANI GGCC 6 cut(s) 24, 142, 146, 453, 527, 569
BspCNI CTCAG 1 cut(s) 514
BspFNI CGCG 1 cut(s) 60
BspLI GGNNCC 3 cut(s) 454, 491, 596
BspMAI CTGCAG 2 cut(s) 547, 617
BspMI ACCTGC 2 cut(s) 536, 606
BspPI GGATC 1 cut(s) 519
BspT107I GGYRCC 1 cut(s) 489
BsrBI CCGCTC 1 cut(s) 370
BsrFI RCCGGY 3 cut(s) 142, 527, 597
BsrI ACTGG 2 cut(s) 82, 561
BssAI RCCGGY 3 cut(s) 142, 527, 597
BssECI CCNNGG 5 cut(s) 25, 46, 192, 239, 570
BssMI GATC 5 cut(s) 213, 279, 483, 511, 518
BssT1I CCWWGG 3 cut(s) 25, 192, 239
Bst2UI CCWGG 2 cut(s) 21, 571
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 557
BstC8I GCNNGC 2 cut(s) 144, 330
BstDEI CTNAG 1 cut(s) 522
BstDSI CCRYGG 3 cut(s) 25, 192, 239
BstF5I GGATG 1 cut(s) 497
BstFNI CGCG 1 cut(s) 60
BstKTI GATC 5 cut(s) 216, 282, 486, 514, 521
BstMAI GTCTC 1 cut(s) 547
BstMBI GATC 5 cut(s) 213, 279, 483, 511, 518
BstMCI CGRYCG 2 cut(s) 532, 602
BstMWI GCNNNNNNNGC 3 cut(s) 21, 42, 152
BstNI CCWGG 2 cut(s) 21, 571
BstNSI RCATGY 1 cut(s) 332
BstSCI CCNGG 3 cut(s) 19, 155, 569
BstSFI CTRYAG 2 cut(s) 543, 613
BstUI CGCG 1 cut(s) 60
BstV1I GCAGC 3 cut(s) 431, 529, 599
BstV2I GAAGAC 1 cut(s) 583
BsuRI GGCC 6 cut(s) 24, 142, 146, 453, 527, 569
BtgI CCRYGG 3 cut(s) 25, 192, 239
BtgZI GCGATG 2 cut(s) 41, 75
BtrI CACGTC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 497
BtsIMutI CAGTG 2 cut(s) 362, 479
BtuMI TCGCGA 1 cut(s) 60
BveI ACCTGC 2 cut(s) 536, 606
Cac8I GCNNGC 2 cut(s) 144, 330
Cfr10I RCCGGY 3 cut(s) 142, 527, 597
Cfr13I GGNCC 4 cut(s) 17, 452, 567, 595
Csp6I GTAC 2 cut(s) 232, 386
CspAI ACCGGT 1 cut(s) 597
CviAII CATG 5 cut(s) 26, 193, 240, 329, 449
CviQI GTAC 2 cut(s) 232, 386
DdeI CTNAG 1 cut(s) 522
DpnI GATC 5 cut(s) 215, 281, 485, 513, 520
DpnII GATC 5 cut(s) 213, 279, 483, 511, 518
EaeI YGGCCR 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EciI GGCGGA 1 cut(s) 601
Eco130I CCWWGG 3 cut(s) 25, 192, 239
Eco47I GGWCC 2 cut(s) 17, 595
EcoO109I RGGNCCY 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 19, 569
EcoT14I CCWWGG 3 cut(s) 25, 192, 239
ErhI CCWWGG 3 cut(s) 25, 192, 239
FaeI CATG 5 cut(s) 29, 196, 243, 332, 452
FaqI GGGAC 1 cut(s) 608
FatI CATG 5 cut(s) 25, 192, 239, 328, 448
FblI GTMKAC 1 cut(s) 465
Fnu4HI GCNGC 3 cut(s) 420, 543, 613
FokI GGATG 1 cut(s) 484
FseI GGCCGGCC 1 cut(s) 146
Fsp4HI GCNGC 3 cut(s) 420, 543, 613
GluI GCNGC 3 cut(s) 420, 543, 613
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 6 cut(s) 24, 142, 146, 453, 527, 569
HapII CCGG 4 cut(s) 143, 156, 528, 598
Hin1II CATG 5 cut(s) 29, 196, 243, 332, 452
HincII GTYRAC 1 cut(s) 466
HindII GTYRAC 1 cut(s) 466
HinfI GANTC 2 cut(s) 129, 262
HpaII CCGG 4 cut(s) 143, 156, 528, 598
HphI GGTGA 2 cut(s) 506, 560
Hpy166II GTNNAC 2 cut(s) 318, 466
Hpy188I TCNGA 6 cut(s) 50, 169, 206, 523, 534, 604
Hpy188III TCNNGA 4 cut(s) 59, 91, 133, 298
Hpy8I GTNNAC 2 cut(s) 318, 466
Hpy99I CGWCG 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 276, 576, 601
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 2 cut(s) 6, 314
HpyCH4V TGCA 5 cut(s) 125, 252, 419, 545, 615
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 42, 152
HpyF3I CTNAG 1 cut(s) 522
HpySE526I ACGT 2 cut(s) 6, 314
Hsp92II CATG 5 cut(s) 29, 196, 243, 332, 452
KroI GCCGGC 1 cut(s) 142
KroNI GCCGGC 1 cut(s) 144
Kzo9I GATC 5 cut(s) 213, 279, 483, 511, 518
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 3 cut(s) 431, 529, 599
LweI GCATC 3 cut(s) 64, 303, 398
MaeII ACGT 2 cut(s) 6, 314
MaeIII GTNAC 3 cut(s) 7, 73, 97
MalI GATC 5 cut(s) 215, 281, 485, 513, 520
MbiI CCGCTC 1 cut(s) 370
MboI GATC 5 cut(s) 213, 279, 483, 511, 518
MboII GAAGA 3 cut(s) 451, 574, 588
MluCI AATT 2 cut(s) 244, 427
MmeI TCCRAC 2 cut(s) 512, 582
MnlI CCTC 9 cut(s) 44, 56, 157, 175, 375, 479, 511, 517, 558
MroNI GCCGGC 1 cut(s) 142
MseI TTAA 3 cut(s) 198, 276, 306
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 4 cut(s) 143, 156, 528, 598
MspR9I CCNGG 3 cut(s) 21, 157, 571
MvaI CCWGG 2 cut(s) 21, 571
MvnI CGCG 1 cut(s) 60
MwoI GCNNNNNNNGC 3 cut(s) 21, 42, 152
NaeI GCCGGC 1 cut(s) 144
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 3 cut(s) 25, 192, 239
NdeII GATC 5 cut(s) 213, 279, 483, 511, 518
NgoMIV GCCGGC 1 cut(s) 142
NlaIII CATG 5 cut(s) 29, 196, 243, 332, 452
NlaIV GGNNCC 3 cut(s) 454, 491, 596
NmuCI GTSAC 1 cut(s) 7
NruI TCGCGA 1 cut(s) 60
NspI RCATGY 1 cut(s) 332
PaeI GCATGC 1 cut(s) 332
PaqCI CACCTGC 2 cut(s) 536, 606
PdiI GCCGGC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 129, 262
PflMI CCANNNNNTGG 1 cut(s) 26
PinAI ACCGGT 1 cut(s) 597
PkrI GCNGC 3 cut(s) 421, 544, 614
Psp6I CCWGG 2 cut(s) 19, 569
PspGI CCWGG 2 cut(s) 19, 569
PspN4I GGNNCC 3 cut(s) 454, 491, 596
PspPI GGNCC 4 cut(s) 17, 452, 567, 595
PstI CTGCAG 2 cut(s) 547, 617
RigI GGCCGGCC 1 cut(s) 146
RruI TCGCGA 1 cut(s) 60
RsaI GTAC 2 cut(s) 233, 387
RsaNI GTAC 2 cut(s) 232, 386
RseI CAYNNNNRTG 1 cut(s) 60
SalI GTCGAC 1 cut(s) 464
SaqAI TTAA 3 cut(s) 198, 276, 306
SatI GCNGC 3 cut(s) 420, 543, 613
Sau3AI GATC 5 cut(s) 213, 279, 483, 511, 518
Sau96I GGNCC 4 cut(s) 17, 452, 567, 595
ScaI AGTACT 2 cut(s) 233, 387
ScrFI CCNGG 3 cut(s) 21, 157, 571
SetI ASST 7 cut(s) 9, 73, 317, 424, 471, 550, 620
SfaNI GCATC 3 cut(s) 64, 303, 398
SfcI CTRYAG 2 cut(s) 543, 613
SinI GGWCC 2 cut(s) 17, 595
SmiMI CAYNNNNRTG 1 cut(s) 60
SphI GCATGC 1 cut(s) 332
Sse9I AATT 2 cut(s) 244, 427
SsiI CCGC 4 cut(s) 15, 326, 368, 586
StyD4I CCNGG 3 cut(s) 19, 155, 569
StyI CCWWGG 3 cut(s) 25, 192, 239
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 2 cut(s) 9, 317
TaqI TCGA 1 cut(s) 465
TasI AATT 2 cut(s) 244, 427
TatI WGTACW 2 cut(s) 231, 385
TfiI GAWTC 2 cut(s) 129, 262
Tru1I TTAA 3 cut(s) 198, 276, 306
Tru9I TTAA 3 cut(s) 198, 276, 306
TscAI CASTG 2 cut(s) 362, 486
TseFI GTSAC 1 cut(s) 7
TseI GCWGC 3 cut(s) 419, 542, 612
Tsp45I GTSAC 1 cut(s) 7
TspDTI ATGAA 3 cut(s) 73, 78, 437
TspGWI ACGGA 1 cut(s) 524
TspRI CASTG 2 cut(s) 362, 486
Van91I CCANNNNNTGG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 17, 595
XapI RAATTY 1 cut(s) 244
XceI RCATGY 1 cut(s) 332
XmiI GTMKAC 1 cut(s) 465
ZrmI AGTACT 2 cut(s) 233, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.