Prupe.3G109500_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000434
Physical Location & Seq
Reverse (-)
8857788 .. 8860891
3104 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G109500.1

Sequence Viewer

Length: 1143 bp
ATGTGGTATGACGTGACAAGTGCAACATACGGTGCAAAGCCTGGCTCTGATGTCAGTACGGCCTTGGCCAAGGCTTGGAGTGATGCATGTGCATCGCCATCCGCGAGTAAAGTTGTCGTTCCGAGCGGGACATACAAGTTAAAAGAAGCAACTTTCAGAGGCCCCTGTAAGGCTCCTATTGAGATGCAAGTTCAAGGCACATTGCAGGCTCCAGCAGACGCTGGCCAACTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTTCTTGGAATCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTCCTCCCGTTAATCTGCGGTTTGAATTCCTCACAAATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAATTTTTCCACATCCATGTTTTCCGGTGCAACCATACTACATTTCAACAGCTTACCATCACAGCACCCGACGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCGACTGGTATCAACATTACTCATTCAAAGATTGGAACTGGGGATGACTGTATTTCTATTGGTGATGACTCCCACGAAATCACAGTGACTGGTGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAAATATAAGGAAGAAAAGGATGTGACCGGGATCATAGTTAAGAACTGCACCCTGACTAATACGGAGAACGGTGTGAGAATCAAAACATTTCCAGATTCTCCTTCGCCTAGCTCTGCCTCGGGTATACACTATGAGGATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTGTACTGCCCATATACTAAGTGTGAACAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCACTCCACTTGCAGTCAAGCTTGTATGTACCACGGGCAAACCGTGTGAGAATGTGGAGTTGACTGACATTGATCTCACCTACGGTGGAGACAAAGGCCCTCTTACCTCTGTGTGTTCTAATGTCAAGCCCGCAATTACTGGCGTGACAAAGGCTCTTGGTTGTGCTACATCGTCCTTGGCACCTCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

381

Amino Acids

40.5

Weight (kDa)

7.06

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1129
AccB7I CCANNNNNTGG 2 cut(s) 75, 653
AccBSI CCGCTC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 802
AccII CGCG 1 cut(s) 104
AciI CCGC 4 cut(s) 102, 126, 379, 1080
AclWI GGATC 1 cut(s) 716
AcoI YGGCCR 3 cut(s) 66, 223, 304
AcsI RAATTY 3 cut(s) 386, 397, 434
AfaI GTAC 4 cut(s) 58, 263, 863, 979
AfiI CCNNNNNNNGG 4 cut(s) 75, 169, 535, 653
AgsI TTSAA 5 cut(s) 194, 386, 479, 567, 928
AjiI CACGTC 1 cut(s) 13
AjnI CCWGG 2 cut(s) 40, 646
AluBI AGCT 4 cut(s) 484, 789, 924, 970
AluI AGCT 4 cut(s) 484, 789, 924, 970
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 1032
AlwI GGATC 1 cut(s) 716
AlwNI CAGNNNCTG 2 cut(s) 221, 629
Ama87I CYCGRG 1 cut(s) 796
AoxI GGCC 8 cut(s) 60, 66, 160, 223, 304, 644, 649, 1045
ApoI RAATTY 3 cut(s) 386, 397, 434
AspS9I GGNCC 3 cut(s) 161, 644, 1046
AsuC2I CCSGG 1 cut(s) 706
AsuHPI GGTGA 3 cut(s) 268, 614, 1018
AvaI CYCGRG 1 cut(s) 796
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BalI TGGCCA 3 cut(s) 68, 225, 306
BanI GGYRCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 944
Bbv12I GWGCWC 1 cut(s) 316
BccI CCATC 4 cut(s) 106, 296, 497, 515
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 75, 109
BciT130I CCWGG 2 cut(s) 42, 648
BciVI GTATCC 1 cut(s) 235
BcnI CCSGG 1 cut(s) 706
BcoDI GTCTC 1 cut(s) 1032
BfaI CTAG 1 cut(s) 786
BfuI GTATCC 1 cut(s) 235
Bme1390I CCNGG 3 cut(s) 42, 648, 706
BmeT110I CYCGRG 1 cut(s) 796
BmgBI CACGTC 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 161, 644, 1046
BmiI GGNNCC 4 cut(s) 163, 174, 210, 1131
BmrFI CCNGG 3 cut(s) 42, 648, 706
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 3 cut(s) 73, 101, 174
BmuI ACTGGG 1 cut(s) 588
BpmI CTGGAG 1 cut(s) 195
BpuMI CCSGG 1 cut(s) 706
BsaJI CCNNGG 8 cut(s) 63, 69, 307, 652, 673, 795, 981, 1125
BsaWI WCCGGW 2 cut(s) 238, 456
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 169, 535, 653
Bse1I ACTGG 4 cut(s) 550, 583, 634, 1093
Bse3DI GCAATG 1 cut(s) 200
BseBI CCWGG 2 cut(s) 42, 648
BseDI CCNNGG 8 cut(s) 63, 69, 307, 652, 673, 795, 981, 1125
BseGI GGATG 4 cut(s) 98, 444, 589, 703
BseLI CCNNNNNNNGG 4 cut(s) 75, 169, 535, 653
BseMI GCAATG 1 cut(s) 200
BseNI ACTGG 4 cut(s) 550, 583, 634, 1093
BseRI GAGGAG 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 8 cut(s) 62, 68, 162, 225, 306, 646, 651, 1047
BshNI GGYRCC 1 cut(s) 1129
BsiHKAI GWGCWC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 796
BsiSI CCGG 3 cut(s) 239, 457, 705
BslFI GGGAC 2 cut(s) 142, 307
BslI CCNNNNNNNGG 4 cut(s) 75, 169, 535, 653
BsmAI GTCTC 1 cut(s) 1032
BsmFI GGGAC 2 cut(s) 142, 307
BsnI GGCC 8 cut(s) 62, 68, 162, 225, 306, 646, 651, 1047
BsoBI CYCGRG 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 316, 944
Bsp143I GATC 3 cut(s) 708, 909, 1021
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 4 cut(s) 102, 126, 379, 1080
BspANI GGCC 8 cut(s) 62, 68, 162, 225, 306, 646, 651, 1047
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 4 cut(s) 163, 174, 210, 1131
BspPI GGATC 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 1129
BsrBI CCGCTC 1 cut(s) 126
BsrDI GCAATG 1 cut(s) 200
BsrI ACTGG 4 cut(s) 550, 583, 634, 1093
BssECI CCNNGG 8 cut(s) 63, 69, 307, 652, 673, 795, 981, 1125
BssMI GATC 3 cut(s) 708, 909, 1021
BssNAI GTATAC 1 cut(s) 803
BssT1I CCWWGG 6 cut(s) 63, 69, 307, 652, 673, 1125
Bst1107I GTATAC 1 cut(s) 803
Bst2UI CCWGG 2 cut(s) 42, 648
Bst4CI ACNGT 6 cut(s) 32, 590, 625, 749, 993, 1034
Bst6I CTCTTC 1 cut(s) 1140
BstC8I GCNNGC 3 cut(s) 207, 223, 1080
BstDEI CTNAG 1 cut(s) 876
BstDSI CCRYGG 2 cut(s) 652, 981
BstF5I GGATG 4 cut(s) 98, 444, 589, 703
BstFNI CGCG 1 cut(s) 104
BstKTI GATC 3 cut(s) 711, 912, 1024
BstMAI GTCTC 1 cut(s) 1032
BstMBI GATC 3 cut(s) 708, 909, 1021
BstMWI GCNNNNNNNGC 1 cut(s) 669
BstNI CCWGG 2 cut(s) 42, 648
BstNSI RCATGY 2 cut(s) 90, 274
BstSCI CCNGG 3 cut(s) 40, 646, 704
BstUI CGCG 1 cut(s) 104
BstZ17I GTATAC 1 cut(s) 803
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 8 cut(s) 62, 68, 162, 225, 306, 646, 651, 1047
BtgI CCRYGG 2 cut(s) 652, 981
BtgZI GCGATG 1 cut(s) 78
BtrI CACGTC 1 cut(s) 13
BtsCI GGATG 4 cut(s) 98, 444, 589, 703
BtsIMutI CAGTG 1 cut(s) 630
Cac8I GCNNGC 3 cut(s) 207, 223, 1080
CaiI CAGNNNCTG 2 cut(s) 221, 629
Cfr13I GGNCC 3 cut(s) 161, 644, 1046
CseI GACGC 1 cut(s) 227
Csp6I GTAC 4 cut(s) 57, 262, 862, 978
CviAII CATG 5 cut(s) 87, 271, 449, 653, 823
CviQI GTAC 4 cut(s) 57, 262, 862, 978
DdeI CTNAG 1 cut(s) 876
DpnI GATC 3 cut(s) 710, 911, 1023
DpnII GATC 3 cut(s) 708, 909, 1021
EaeI YGGCCR 3 cut(s) 66, 223, 304
Eam1104I CTCTTC 1 cut(s) 1140
EarI CTCTTC 1 cut(s) 1140
Eco130I CCWWGG 6 cut(s) 63, 69, 307, 652, 673, 1125
Eco24I GRGCYC 1 cut(s) 944
Eco88I CYCGRG 1 cut(s) 796
EcoO109I RGGNCCY 2 cut(s) 161, 1046
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 40, 646
EcoT14I CCWWGG 6 cut(s) 63, 69, 307, 652, 673, 1125
EcoT22I ATGCAT 1 cut(s) 88
EcoT38I GRGCYC 1 cut(s) 944
ErhI CCWWGG 6 cut(s) 63, 69, 307, 652, 673, 1125
FaeI CATG 5 cut(s) 90, 274, 452, 656, 826
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 1035, 1067
FaqI GGGAC 2 cut(s) 142, 307
FatI CATG 5 cut(s) 86, 270, 448, 652, 822
FauI CCCGC 2 cut(s) 119, 1087
FblI GTMKAC 1 cut(s) 802
FokI GGATG 4 cut(s) 85, 431, 596, 710
FriOI GRGCYC 1 cut(s) 944
FspBI CTAG 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 8 cut(s) 62, 68, 162, 225, 306, 646, 651, 1047
HapII CCGG 3 cut(s) 239, 457, 705
HgaI GACGC 1 cut(s) 227
Hin1II CATG 5 cut(s) 90, 274, 452, 656, 826
HincII GTYRAC 1 cut(s) 1011
HindII GTYRAC 1 cut(s) 1011
HindIII AAGCTT 1 cut(s) 968
HinfI GANTC 5 cut(s) 325, 525, 608, 756, 773
HpaII CCGG 3 cut(s) 239, 457, 705
HphI GGTGA 3 cut(s) 268, 614, 1018
Hpy166II GTNNAC 3 cut(s) 803, 884, 1011
Hpy188I TCNGA 3 cut(s) 49, 123, 158
Hpy188III TCNNGA 3 cut(s) 410, 770, 928
Hpy8I GTNNAC 3 cut(s) 803, 884, 1011
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 1 cut(s) 789
HpyCH4III ACNGT 6 cut(s) 32, 590, 625, 749, 993, 1034
HpyCH4IV ACGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 669
HpyF3I CTNAG 1 cut(s) 876
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 5 cut(s) 90, 274, 452, 656, 826
Kzo9I GATC 3 cut(s) 708, 909, 1021
LmnI GCTCC 3 cut(s) 178, 214, 311
LweI GCATC 3 cut(s) 73, 101, 174
MaeI CTAG 1 cut(s) 786
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 6 cut(s) 13, 625, 634, 700, 836, 1093
MalI GATC 3 cut(s) 710, 911, 1023
MbiI CCGCTC 1 cut(s) 126
MboI GATC 3 cut(s) 708, 909, 1021
MboII GAAGA 2 cut(s) 701, 1127
MfeI CAATTG 1 cut(s) 857
MhlI GDGCHC 2 cut(s) 316, 944
MlsI TGGCCA 3 cut(s) 68, 225, 306
MluCI AATT 6 cut(s) 352, 386, 397, 434, 857, 1083
MluNI TGGCCA 3 cut(s) 68, 225, 306
MlyI GAGTC 1 cut(s) 602
Mox20I TGGCCA 3 cut(s) 68, 225, 306
Mph1103I ATGCAT 1 cut(s) 88
MscI TGGCCA 3 cut(s) 68, 225, 306
MseI TTAA 7 cut(s) 140, 372, 426, 717, 828, 906, 936
MslI CAYNNNNRTG 2 cut(s) 269, 447
Msp20I TGGCCA 3 cut(s) 68, 225, 306
MspI CCGG 3 cut(s) 239, 457, 705
MspR9I CCNGG 3 cut(s) 42, 648, 706
MunI CAATTG 1 cut(s) 857
MvaI CCWGG 2 cut(s) 42, 648
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 669
NciI CCSGG 1 cut(s) 706
NcoI CCATGG 1 cut(s) 652
NdeII GATC 3 cut(s) 708, 909, 1021
NlaIII CATG 5 cut(s) 90, 274, 452, 656, 826
NlaIV GGNNCC 4 cut(s) 163, 174, 210, 1131
NmuCI GTSAC 4 cut(s) 13, 625, 700, 1093
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 2 cut(s) 90, 274
PcsI WCGNNNNNNNCGW 2 cut(s) 101, 989
PfeI GAWTC 4 cut(s) 325, 525, 756, 773
PflMI CCANNNNNTGG 2 cut(s) 75, 653
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Psp6I CCWGG 2 cut(s) 40, 646
PspGI CCWGG 2 cut(s) 40, 646
PspN4I GGNNCC 4 cut(s) 163, 174, 210, 1131
PspPI GGNCC 3 cut(s) 161, 644, 1046
PstNI CAGNNNCTG 2 cut(s) 221, 629
RsaI GTAC 4 cut(s) 58, 263, 863, 979
RsaNI GTAC 4 cut(s) 57, 262, 862, 978
RseI CAYNNNNRTG 2 cut(s) 269, 447
SaqAI TTAA 7 cut(s) 140, 372, 426, 717, 828, 906, 936
Sau3AI GATC 3 cut(s) 708, 909, 1021
Sau96I GGNCC 3 cut(s) 161, 644, 1046
SchI GAGTC 1 cut(s) 602
ScrFI CCNGG 3 cut(s) 42, 648, 706
SduI GDGCHC 2 cut(s) 316, 944
SfaNI GCATC 3 cut(s) 73, 101, 174
SmiMI CAYNNNNRTG 2 cut(s) 269, 447
Sse9I AATT 6 cut(s) 352, 386, 397, 434, 857, 1083
SsiI CCGC 4 cut(s) 102, 126, 379, 1080
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 3 cut(s) 40, 646, 704
StyI CCWWGG 6 cut(s) 63, 69, 307, 652, 673, 1125
TaaI ACNGT 6 cut(s) 32, 590, 625, 749, 993, 1034
TaiI ACGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 542
TasI AATT 6 cut(s) 352, 386, 397, 434, 857, 1083
TatI WGTACW 2 cut(s) 261, 861
TfiI GAWTC 4 cut(s) 325, 525, 756, 773
Tru1I TTAA 7 cut(s) 140, 372, 426, 717, 828, 906, 936
Tru9I TTAA 7 cut(s) 140, 372, 426, 717, 828, 906, 936
TscAI CASTG 1 cut(s) 630
TseFI GTSAC 4 cut(s) 13, 625, 700, 1093
Tsp45I GTSAC 4 cut(s) 13, 625, 700, 1093
TspGWI ACGGA 2 cut(s) 755, 885
TspRI CASTG 1 cut(s) 630
Van91I CCANNNNNTGG 2 cut(s) 75, 653
XapI RAATTY 3 cut(s) 386, 397, 434
XceI RCATGY 2 cut(s) 90, 274
XmiI GTMKAC 1 cut(s) 802
XspI CTAG 1 cut(s) 786
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.