Prupe.2G009200_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000434
Physical Location & Seq
Forward (+)
838893 .. 840113
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G009200.1

Sequence Viewer

Length: 1221 bp
ATGAAATTAAGTTTCTTGGCAATGCTTTTGTGCTTATTGTTAGCATCTACACCTAAAGCTCATGCTAGTGTGTTTGACGTGACGAGTGCAACATACGGTGCAAAGCCTGGCTCTGATGTCAGTACGGCCTTAGCCAAAGCTTGGAGTGATGCATGTGCATCGCCATCCGCGAGTAAAGTTGTTGTTCCGAGCGGGACATACAAGTTAAAAGAAGCAACTTTCAGAGGCCCCTGTAAGGCTCCTATTGAGATGCAAGTTCAAGGCACATTGGAGGCTCCAGCAGATGCTAGCCAACTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTTCTTGGAATCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTCTTCCCGTTAATCTGCGGTTCGAATTCCTCACAAATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAATTTTTCCACATGCATGTTTTCCGGTGCAACCATACTACATTTCAACAGCTTACCATCACAGCACCTGACGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCGACTGCTATCAACATTACTCATTCAAAGATTGGAACTGGGGATGACTGTATTTCTATTGGTGATGACTCTCACGAAATCACAGTGACTGATGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAAATATAAGGACGAAAAGGATGTGACTGGGATCATAGTTAAGAATTGCACCCTGACTAATACGGAGAACGGTGTGAGAATCAAAACATTTCCAGATTCTCCTTCCCCTAGCACTGCCTCGGGTATACACTATGAGGATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTGTACTGCCCATATACTCAGTGTGAACAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCTCTCCACTTGCAGTCAAGCTTGTATGTACCACGGGCATACCGTGTGAGAATGTGGAGTTGACTGACATTGATCTCACCTACGGTGGAAACAAAGGCCCTCTTACCTCTATGTGTTCTAATGTCAAGCCCACAATTACTGGCGTGACAAAGGCTCTTGGTTGCGCTACATCGTCCTTGGCACCTCTTCCTTTATCCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

407

Amino Acids

43.33

Weight (kDa)

7.49

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1195
AccB7I CCANNNNNTGG 2 cut(s) 141, 719
AccBSI CCGCTC 1 cut(s) 192
AccI GTMKAC 1 cut(s) 868
AccII CGCG 1 cut(s) 170
AciI CCGC 3 cut(s) 168, 192, 445
AclWI GGATC 1 cut(s) 782
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 3 cut(s) 452, 463, 500
AfaI GTAC 4 cut(s) 124, 329, 929, 1045
AfiI CCNNNNNNNGG 4 cut(s) 141, 235, 601, 719
AgsI TTSAA 4 cut(s) 260, 545, 633, 994
AjiI CACGTC 1 cut(s) 79
AjnI CCWGG 2 cut(s) 106, 712
AluBI AGCT 5 cut(s) 59, 140, 550, 990, 1036
AluI AGCT 5 cut(s) 59, 140, 550, 990, 1036
Alw21I GWGCWC 1 cut(s) 382
AlwI GGATC 1 cut(s) 782
AlwNI CAGNNNCTG 2 cut(s) 566, 695
Ama87I CYCGRG 1 cut(s) 862
AoxI GGCC 6 cut(s) 126, 226, 370, 710, 715, 1111
ApoI RAATTY 3 cut(s) 452, 463, 500
AspLEI GCGC 1 cut(s) 1181
AspS9I GGNCC 3 cut(s) 227, 710, 1112
AsuHPI GGTGA 3 cut(s) 334, 680, 1084
AsuII TTCGAA 1 cut(s) 450
AsuNHI GCTAGC 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 300, 333
BalI TGGCCA 1 cut(s) 372
BanI GGYRCC 1 cut(s) 1195
BanII GRGCYC 1 cut(s) 1010
Bbv12I GWGCWC 1 cut(s) 382
BccI CCATC 4 cut(s) 172, 362, 563, 581
BceAI ACGGC 1 cut(s) 141
BcgI CGANNNNNNTGC 2 cut(s) 141, 175
BciT130I CCWGG 2 cut(s) 108, 714
BciVI GTATCC 1 cut(s) 301
BfaI CTAG 3 cut(s) 66, 288, 852
BfuI GTATCC 1 cut(s) 301
Bme1390I CCNGG 2 cut(s) 108, 714
BmeT110I CYCGRG 1 cut(s) 862
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 3 cut(s) 227, 710, 1112
BmiI GGNNCC 4 cut(s) 229, 240, 276, 1197
BmrFI CCNGG 2 cut(s) 108, 714
BmrI ACTGGG 2 cut(s) 654, 780
BmsI GCATC 5 cut(s) 53, 139, 167, 240, 274
BmtI GCTAGC 1 cut(s) 291
BmuI ACTGGG 2 cut(s) 654, 780
BpmI CTGGAG 1 cut(s) 261
Bpu10I CCTNAGC 1 cut(s) 130
Bpu14I TTCGAA 1 cut(s) 450
BsaJI CCNNGG 6 cut(s) 373, 718, 739, 861, 1047, 1191
BsaWI WCCGGW 2 cut(s) 304, 522
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 235, 601, 719
Bse1I ACTGG 3 cut(s) 649, 775, 1159
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 2 cut(s) 108, 714
BseDI CCNNGG 6 cut(s) 373, 718, 739, 861, 1047, 1191
BseGI GGATG 3 cut(s) 164, 655, 769
BseLI CCNNNNNNNGG 4 cut(s) 141, 235, 601, 719
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 956
BseNI ACTGG 3 cut(s) 649, 775, 1159
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 6 cut(s) 128, 228, 372, 712, 717, 1113
BshNI GGYRCC 1 cut(s) 1195
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 862
BsiSI CCGG 2 cut(s) 305, 523
BslFI GGGAC 2 cut(s) 208, 373
BslI CCNNNNNNNGG 4 cut(s) 141, 235, 601, 719
BsmFI GGGAC 2 cut(s) 208, 373
BsnI GGCC 6 cut(s) 128, 228, 372, 712, 717, 1113
BsoBI CYCGRG 1 cut(s) 862
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 382, 1010
Bsp143I GATC 3 cut(s) 774, 975, 1087
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 3 cut(s) 168, 192, 445
BspANI GGCC 6 cut(s) 128, 228, 372, 712, 717, 1113
BspCNI CTCAG 1 cut(s) 955
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 4 cut(s) 229, 240, 276, 1197
BspOI GCTAGC 1 cut(s) 291
BspPI GGATC 1 cut(s) 782
BspT104I TTCGAA 1 cut(s) 450
BspT107I GGYRCC 1 cut(s) 1195
BsrBI CCGCTC 1 cut(s) 192
BsrDI GCAATG 1 cut(s) 27
BsrI ACTGG 3 cut(s) 649, 775, 1159
BssECI CCNNGG 6 cut(s) 373, 718, 739, 861, 1047, 1191
BssMI GATC 3 cut(s) 774, 975, 1087
BssNAI GTATAC 1 cut(s) 869
BssT1I CCWWGG 4 cut(s) 373, 718, 739, 1191
Bst1107I GTATAC 1 cut(s) 869
Bst2UI CCWGG 2 cut(s) 108, 714
Bst4CI ACNGT 6 cut(s) 98, 656, 691, 815, 1059, 1100
Bst6I CTCTTC 2 cut(s) 435, 1206
BstBI TTCGAA 1 cut(s) 450
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 2 cut(s) 130, 942
BstDSI CCRYGG 2 cut(s) 718, 1047
BstF5I GGATG 3 cut(s) 164, 655, 769
BstFNI CGCG 1 cut(s) 170
BstHHI GCGC 1 cut(s) 1181
BstKTI GATC 3 cut(s) 777, 978, 1090
BstMBI GATC 3 cut(s) 774, 975, 1087
BstMWI GCNNNNNNNGC 2 cut(s) 611, 735
BstNI CCWGG 2 cut(s) 108, 714
BstNSI RCATGY 4 cut(s) 156, 340, 514, 518
BstSCI CCNGG 2 cut(s) 106, 712
BstUI CGCG 1 cut(s) 170
BstZ17I GTATAC 1 cut(s) 869
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 6 cut(s) 128, 228, 372, 712, 717, 1113
BtgI CCRYGG 2 cut(s) 718, 1047
BtgZI GCGATG 1 cut(s) 144
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 3 cut(s) 164, 655, 769
BtsI GCAGTG 1 cut(s) 855
BtsIMutI CAGTG 3 cut(s) 696, 855, 950
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 2 cut(s) 566, 695
CfoI GCGC 1 cut(s) 1181
Cfr13I GGNCC 3 cut(s) 227, 710, 1112
Csp6I GTAC 4 cut(s) 123, 328, 928, 1044
CviAII CATG 7 cut(s) 62, 153, 337, 511, 515, 719, 889
CviQI GTAC 4 cut(s) 123, 328, 928, 1044
DdeI CTNAG 2 cut(s) 130, 942
DpnI GATC 3 cut(s) 776, 977, 1089
DpnII GATC 3 cut(s) 774, 975, 1087
EaeI YGGCCR 1 cut(s) 370
Eam1104I CTCTTC 2 cut(s) 435, 1206
EarI CTCTTC 2 cut(s) 435, 1206
Eco130I CCWWGG 4 cut(s) 373, 718, 739, 1191
Eco24I GRGCYC 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 862
EcoO109I RGGNCCY 2 cut(s) 227, 1112
EcoRI GAATTC 1 cut(s) 452
EcoRII CCWGG 2 cut(s) 106, 712
EcoT14I CCWWGG 4 cut(s) 373, 718, 739, 1191
EcoT22I ATGCAT 2 cut(s) 154, 516
EcoT38I GRGCYC 1 cut(s) 1010
ErhI CCWWGG 4 cut(s) 373, 718, 739, 1191
FaeI CATG 7 cut(s) 65, 156, 340, 514, 518, 722, 892
FalI AAGNNNNNCTT 4 cut(s) 366, 398, 1101, 1133
FaqI GGGAC 2 cut(s) 208, 373
FatI CATG 7 cut(s) 61, 152, 336, 510, 514, 718, 888
FauI CCCGC 1 cut(s) 185
FblI GTMKAC 1 cut(s) 868
FokI GGATG 3 cut(s) 151, 662, 776
FriOI GRGCYC 1 cut(s) 1010
FspBI CTAG 3 cut(s) 66, 288, 852
GlaI GCGC 1 cut(s) 1180
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 6 cut(s) 128, 228, 372, 712, 717, 1113
HapII CCGG 2 cut(s) 305, 523
HhaI GCGC 1 cut(s) 1181
Hin1II CATG 7 cut(s) 65, 156, 340, 514, 518, 722, 892
Hin6I GCGC 1 cut(s) 1179
HinP1I GCGC 1 cut(s) 1179
HincII GTYRAC 1 cut(s) 1077
HindII GTYRAC 1 cut(s) 1077
HindIII AAGCTT 2 cut(s) 138, 1034
HinfI GANTC 5 cut(s) 391, 591, 674, 822, 839
HpaII CCGG 2 cut(s) 305, 523
HphI GGTGA 3 cut(s) 334, 680, 1084
Hpy166II GTNNAC 3 cut(s) 869, 950, 1077
Hpy188I TCNGA 3 cut(s) 115, 189, 224
Hpy188III TCNNGA 4 cut(s) 476, 680, 836, 994
Hpy8I GTNNAC 3 cut(s) 869, 950, 1077
HpyAV CCTTC 1 cut(s) 855
HpyCH4III ACNGT 6 cut(s) 98, 656, 691, 815, 1059, 1100
HpyCH4IV ACGT 1 cut(s) 78
HpyF10VI GCNNNNNNNGC 2 cut(s) 611, 735
HpyF3I CTNAG 2 cut(s) 130, 942
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 7 cut(s) 65, 156, 340, 514, 518, 722, 892
HspAI GCGC 1 cut(s) 1179
Kzo9I GATC 3 cut(s) 774, 975, 1087
LmnI GCTCC 3 cut(s) 244, 280, 377
LweI GCATC 5 cut(s) 53, 139, 167, 240, 274
MaeI CTAG 3 cut(s) 66, 288, 852
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 6 cut(s) 79, 691, 700, 766, 902, 1159
MalI GATC 3 cut(s) 776, 977, 1089
MbiI CCGCTC 1 cut(s) 192
MboI GATC 3 cut(s) 774, 975, 1087
MboII GAAGA 2 cut(s) 422, 1193
MfeI CAATTG 1 cut(s) 923
MhlI GDGCHC 2 cut(s) 382, 1010
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 8 cut(s) 5, 418, 452, 463, 500, 787, 923, 1149
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 1 cut(s) 668
Mox20I TGGCCA 1 cut(s) 372
Mph1103I ATGCAT 2 cut(s) 154, 516
MscI TGGCCA 1 cut(s) 372
MseI TTAA 8 cut(s) 8, 206, 438, 492, 783, 894, 972, 1002
MslI CAYNNNNRTG 3 cut(s) 66, 335, 513
Msp20I TGGCCA 1 cut(s) 372
MspI CCGG 2 cut(s) 305, 523
MspR9I CCNGG 2 cut(s) 108, 714
MunI CAATTG 1 cut(s) 923
MvaI CCWGG 2 cut(s) 108, 714
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 611, 735
NcoI CCATGG 1 cut(s) 718
NdeII GATC 3 cut(s) 774, 975, 1087
NheI GCTAGC 1 cut(s) 287
NlaIII CATG 7 cut(s) 65, 156, 340, 514, 518, 722, 892
NlaIV GGNNCC 4 cut(s) 229, 240, 276, 1197
NmuCI GTSAC 4 cut(s) 79, 691, 766, 1159
NsiI ATGCAT 2 cut(s) 154, 516
NspI RCATGY 4 cut(s) 156, 340, 514, 518
NspV TTCGAA 1 cut(s) 450
PcsI WCGNNNNNNNCGW 2 cut(s) 167, 1055
PfeI GAWTC 4 cut(s) 391, 591, 822, 839
PflMI CCANNNNNTGG 2 cut(s) 141, 719
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
Psp6I CCWGG 2 cut(s) 106, 712
PspGI CCWGG 2 cut(s) 106, 712
PspN4I GGNNCC 4 cut(s) 229, 240, 276, 1197
PspPI GGNCC 3 cut(s) 227, 710, 1112
PstNI CAGNNNCTG 2 cut(s) 566, 695
RsaI GTAC 4 cut(s) 124, 329, 929, 1045
RsaNI GTAC 4 cut(s) 123, 328, 928, 1044
RseI CAYNNNNRTG 3 cut(s) 66, 335, 513
SaqAI TTAA 8 cut(s) 8, 206, 438, 492, 783, 894, 972, 1002
Sau3AI GATC 3 cut(s) 774, 975, 1087
Sau96I GGNCC 3 cut(s) 227, 710, 1112
SchI GAGTC 1 cut(s) 668
ScrFI CCNGG 2 cut(s) 108, 714
SduI GDGCHC 2 cut(s) 382, 1010
SfaNI GCATC 5 cut(s) 53, 139, 167, 240, 274
SfuI TTCGAA 1 cut(s) 450
SmiMI CAYNNNNRTG 3 cut(s) 66, 335, 513
Sse9I AATT 8 cut(s) 5, 418, 452, 463, 500, 787, 923, 1149
SsiI CCGC 3 cut(s) 168, 192, 445
SspMI CTAG 3 cut(s) 66, 288, 852
StyD4I CCNGG 2 cut(s) 106, 712
StyI CCWWGG 4 cut(s) 373, 718, 739, 1191
TaaI ACNGT 6 cut(s) 98, 656, 691, 815, 1059, 1100
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 450, 608
TasI AATT 8 cut(s) 5, 418, 452, 463, 500, 787, 923, 1149
TatI WGTACW 2 cut(s) 327, 927
TfiI GAWTC 4 cut(s) 391, 591, 822, 839
Tru1I TTAA 8 cut(s) 8, 206, 438, 492, 783, 894, 972, 1002
Tru9I TTAA 8 cut(s) 8, 206, 438, 492, 783, 894, 972, 1002
TscAI CASTG 3 cut(s) 696, 862, 950
TseFI GTSAC 4 cut(s) 79, 691, 766, 1159
Tsp45I GTSAC 4 cut(s) 79, 691, 766, 1159
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 821, 951
TspRI CASTG 3 cut(s) 696, 862, 950
Van91I CCANNNNNTGG 2 cut(s) 141, 719
XapI RAATTY 3 cut(s) 452, 463, 500
XceI RCATGY 4 cut(s) 156, 340, 514, 518
XmiI GTMKAC 1 cut(s) 868
XspI CTAG 3 cut(s) 66, 288, 852
Zsp2I ATGCAT 2 cut(s) 154, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.