pycom09g04480

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000434
Physical Location & Seq
Reverse (-)
3304070 .. 3305108
1039 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g04480.2

Sequence Viewer

Length: 600 bp
ATGGGACGCTCAACTCAGATCAACATCACAGATACAACCATTGGAACTGGGGATGACTGCATCTCTATAGGTCATGGTACCAAGCAACTCCATGTAACCAACGTTACATGCGGACCAGGCCACGGCATAAGCATCGGAAGCCTCGGAAGGACTGAGGATGAAGAACCTGTGTCCGGAATCTTTATCAAGAACTGCACAATTTCAAATACCGATAATGGTGTATCGATCAAAACCTGGCCTGCTTCCCCTGCAAAGGGTACTGCTGTCTCAGATGTTCACTTTGAGGATATTATCATGGACAATGTTAAAAACCCTGTCGTCATAGACCAAGAGTATTGCCCACATAAGTTGTGCACACCTGAGGTTTCATCCAAAGTTAAGATCAGTAATGTTAGCTTCAAGAACATAAAGGGCTCGTCTTCAGGCCCAGTTGGTGTCAAGCTTTTATGCAGTGGAAAGCTGCCATGTGAGAATGTAGAACTGAGCAACATTGATCTCACATACACTGGAGATAAAGGCTCTCTTACCTCTGAATGTAAACATGTCAAGCCCACCATTAACAACGTGGCGAAGCCTCTTGCTTGTGCTACATCTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

200

Amino Acids

20.91

Weight (kDa)

6.29

Isoelectric Point (pI)

31.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 173
AciI CCGC 1 cut(s) 111
AclI AACGTT 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 79, 259
AfiI CCNNNNNNNGG 4 cut(s) 122, 173, 253, 254
AflIII ACRYGT 1 cut(s) 541
AgsI TTSAA 2 cut(s) 204, 400
AjnI CCWGG 2 cut(s) 115, 233
AluBI AGCT 3 cut(s) 396, 442, 460
AluI AGCT 3 cut(s) 396, 442, 460
Alw21I GWGCWC 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 271
Alw44I GTGCAC 1 cut(s) 352
Aor13HI TCCGGA 1 cut(s) 173
AoxI GGCC 3 cut(s) 118, 236, 424
ApaLI GTGCAC 1 cut(s) 352
ApeKI GCWGC 1 cut(s) 460
Asp718I GGTACC 1 cut(s) 77
AspS9I GGNCC 2 cut(s) 113, 425
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 360
BaeGI GKGCMC 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 411
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 447
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 117, 235
BcoDI GTCTC 1 cut(s) 271
BfmI CTRYAG 1 cut(s) 66
BisI GCNGC 1 cut(s) 461
BlsI GCNGC 1 cut(s) 462
Bme1390I CCNGG 2 cut(s) 117, 235
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 113, 425
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 117, 235
BmrI ACTGGG 2 cut(s) 57, 422
BmsI GCATC 2 cut(s) 69, 141
BmuI ACTGGG 2 cut(s) 57, 422
BpiI GAAGAC 1 cut(s) 411
BpmI CTGGAG 1 cut(s) 528
Bsa29I ATCGAT 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 121, 142
BsaWI WCCGGW 1 cut(s) 173
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 173, 253, 254
Bse1I ACTGG 3 cut(s) 52, 428, 511
Bse21I CCTNAGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 23
BseAI TCCGGA 1 cut(s) 173
BseBI CCWGG 2 cut(s) 117, 235
BseCI ATCGAT 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 121, 142
BseGI GGATG 3 cut(s) 58, 163, 368
BseJI GATNNNNATC 1 cut(s) 23
BseLI CCNNNNNNNGG 4 cut(s) 122, 173, 253, 254
BseMII CTCAG 5 cut(s) 29, 144, 282, 351, 473
BseNI ACTGG 3 cut(s) 52, 428, 511
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 447
BsgI GTGCAG 1 cut(s) 178
BshFI GGCC 3 cut(s) 120, 238, 426
BshNI GGYRCC 1 cut(s) 77
BshVI ATCGAT 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 356
BsiSI CCGG 1 cut(s) 174
BslFI GGGAC 1 cut(s) 18
BslI CCNNNNNNNGG 4 cut(s) 122, 173, 253, 254
BsmAI GTCTC 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 120, 238, 426
Bsp1286I GDGCHC 2 cut(s) 356, 416
Bsp13I TCCGGA 1 cut(s) 173
Bsp143I GATC 4 cut(s) 18, 225, 381, 493
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 120, 238, 426
BspCNI CTCAG 5 cut(s) 28, 145, 281, 352, 474
BspDI ATCGAT 1 cut(s) 224
BspEI TCCGGA 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 77
BsrI ACTGG 3 cut(s) 52, 428, 511
BssECI CCNNGG 2 cut(s) 121, 142
BssMI GATC 4 cut(s) 18, 225, 381, 493
Bst2UI CCWGG 2 cut(s) 117, 235
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 5 cut(s) 15, 153, 268, 360, 482
BstDSI CCRYGG 1 cut(s) 121
BstF5I GGATG 3 cut(s) 58, 163, 368
BstKTI GATC 4 cut(s) 21, 228, 384, 496
BstMAI GTCTC 1 cut(s) 271
BstMBI GATC 4 cut(s) 18, 225, 381, 493
BstMWI GCNNNNNNNGC 3 cut(s) 117, 138, 248
BstNI CCWGG 2 cut(s) 117, 235
BstNSI RCATGY 2 cut(s) 111, 545
BstSCI CCNGG 2 cut(s) 115, 233
BstSFI CTRYAG 1 cut(s) 66
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 447
BstV2I GAAGAC 1 cut(s) 411
Bsu15I ATCGAT 1 cut(s) 224
Bsu36I CCTNAGG 1 cut(s) 360
BsuRI GGCC 3 cut(s) 120, 238, 426
BsuTUI ATCGAT 1 cut(s) 224
BtgI CCRYGG 1 cut(s) 121
BtsCI GGATG 3 cut(s) 58, 163, 368
BtsI GCAGTG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 457, 504
Cac8I GCNNGC 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 113, 425
ClaI ATCGAT 1 cut(s) 224
CseI GACGC 1 cut(s) 15
Csp6I GTAC 2 cut(s) 78, 258
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 6 cut(s) 74, 92, 108, 295, 465, 542
CviQI GTAC 2 cut(s) 78, 258
DdeI CTNAG 5 cut(s) 15, 153, 268, 360, 482
DpnI GATC 4 cut(s) 20, 227, 383, 495
DpnII GATC 4 cut(s) 18, 225, 381, 493
Eco24I GRGCYC 1 cut(s) 416
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 360
EcoRII CCWGG 2 cut(s) 115, 233
EcoT38I GRGCYC 1 cut(s) 416
FaeI CATG 6 cut(s) 77, 95, 111, 298, 468, 545
FalI AAGNNNNNCTT 2 cut(s) 507, 539
FaqI GGGAC 1 cut(s) 18
FatI CATG 6 cut(s) 73, 91, 107, 294, 464, 541
Fnu4HI GCNGC 1 cut(s) 461
FokI GGATG 3 cut(s) 65, 170, 355
FriOI GRGCYC 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 461
GluI GCNGC 1 cut(s) 461
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 120, 238, 426
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 15
Hin1II CATG 6 cut(s) 77, 95, 111, 298, 468, 545
HindIII AAGCTT 1 cut(s) 440
HinfI GANTC 1 cut(s) 177
HpaII CCGG 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 277, 354, 539
Hpy188I TCNGA 5 cut(s) 18, 137, 146, 271, 532
Hpy188III TCNNGA 4 cut(s) 174, 187, 400, 597
Hpy8I GTNNAC 3 cut(s) 277, 354, 539
HpyAV CCTTC 1 cut(s) 141
HpyCH4IV ACGT 2 cut(s) 102, 564
HpyCH4V TGCA 5 cut(s) 60, 195, 251, 354, 450
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 138, 248
HpyF3I CTNAG 5 cut(s) 15, 153, 268, 360, 482
HpySE526I ACGT 2 cut(s) 102, 564
Hsp92II CATG 6 cut(s) 77, 95, 111, 298, 468, 545
Kpn2I TCCGGA 1 cut(s) 173
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 4 cut(s) 18, 225, 381, 493
Lsp1109I GCAGC 1 cut(s) 447
LweI GCATC 2 cut(s) 69, 141
MaeII ACGT 2 cut(s) 102, 564
MaeIII GTNAC 2 cut(s) 94, 103
MalI GATC 4 cut(s) 20, 227, 383, 495
MboI GATC 4 cut(s) 18, 225, 381, 493
MboII GAAGA 3 cut(s) 173, 411, 585
MhlI GDGCHC 2 cut(s) 356, 416
MluCI AATT 1 cut(s) 198
MnlI CCTC 6 cut(s) 148, 152, 277, 355, 538, 585
MroI TCCGGA 1 cut(s) 173
MseI TTAA 3 cut(s) 306, 378, 558
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 2 cut(s) 117, 235
MvaI CCWGG 2 cut(s) 117, 235
MwoI GCNNNNNNNGC 3 cut(s) 117, 138, 248
NdeII GATC 4 cut(s) 18, 225, 381, 493
NlaIII CATG 6 cut(s) 77, 95, 111, 298, 468, 545
NlaIV GGNNCC 1 cut(s) 79
NspI RCATGY 2 cut(s) 111, 545
PciI ACATGT 1 cut(s) 541
PfeI GAWTC 1 cut(s) 177
PkrI GCNGC 1 cut(s) 462
PscI ACATGT 1 cut(s) 541
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 115, 233
PspGI CCWGG 2 cut(s) 115, 233
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 113, 425
RsaI GTAC 2 cut(s) 79, 259
RsaNI GTAC 2 cut(s) 78, 258
SaqAI TTAA 3 cut(s) 306, 378, 558
SatI GCNGC 1 cut(s) 461
Sau3AI GATC 4 cut(s) 18, 225, 381, 493
Sau96I GGNCC 2 cut(s) 113, 425
ScrFI CCNGG 2 cut(s) 117, 235
SduI GDGCHC 2 cut(s) 356, 416
SfaNI GCATC 2 cut(s) 69, 141
SfcI CTRYAG 1 cut(s) 66
SinI GGWCC 1 cut(s) 113
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 111
StyD4I CCNGG 2 cut(s) 115, 233
TaiI ACGT 2 cut(s) 105, 567
TaqI TCGA 1 cut(s) 224
TasI AATT 1 cut(s) 198
TfiI GAWTC 1 cut(s) 177
Tru1I TTAA 3 cut(s) 306, 378, 558
Tru9I TTAA 3 cut(s) 306, 378, 558
TscAI CASTG 2 cut(s) 457, 511
TseI GCWGC 1 cut(s) 460
TspDTI ATGAA 2 cut(s) 174, 357
TspRI CASTG 2 cut(s) 457, 511
VneI GTGCAC 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 113
XceI RCATGY 2 cut(s) 111, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.