Prupe.2G009300_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000434
Physical Location & Seq
Forward (+)
847569 .. 848768
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G009300.1

Sequence Viewer

Length: 1200 bp
ATGCTTTTGTGCTTATTGTTAGCATCTACACCTAAAGCTCATGCTAGTGTGTTTGACGTGACGAGTGCAACATACGGTGCAAAGCCTGGCTCTGATGTCAGTACGGCCTTGGCCAAAGCTTGGAGTGATGCATGTGCATCGCCATCCGCGAGTAAAGTTGTTGTTCCGAGCGGGACATACAAGTTAAAAGAAGCAACTTTCAGAGGCCCCTGTAAGGCTCCTATTGAGATGCAAGTTCAAGGCACATTGGAGGCTCCAGCAGATGCTAGCCAACTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTTCTTGGAATCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTCTTCCCGTTAATCTGCGGTTCGAATTCCTCACAAATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAATTTTTCCACACGCATGTTTTCCGGTGCAACCATACTACATTTCAACAGCTTACCATCACAGCACCTGACGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCGACTGCTATCAACATTACTCATTCAAAGATTGGAACTGGGGATGACTGTATTTCTATTGGTGATGACTCCCACGAAATCACAGTGACTGATGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAAATATAAGGAAGAAAAGGATGTGACTGGGATCATAGTTAAGAATTGCACCCTGACTAATATGGAGAACGGTGTGAGAATCAAAACATTTCCAGATTCTCCTTCCCCTAGCACTGCCTCGGGTATACACTATGAGGATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTGTACTGCCCATATACTCAGTGTGAACAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCTCTCCACTTGCAGTCAAGCTTGTATGTACCACGGGCATACCGTGTGAGAATGTGGAGTTGACTGACATTGATCTCACCTACGGTGGAAACAAAGGCCCTCTTACCTCTATGTGTTCTAATGTCAAGCCCACAATTACTGGCGTGACAAAGGCTCTTGGTTGCGCTACATCGTCCTTGGCACCTCTTCCTTTATCCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

400

Amino Acids

42.55

Weight (kDa)

7.09

Isoelectric Point (pI)

29.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1174
AccB7I CCANNNNNTGG 2 cut(s) 120, 698
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 847
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 147, 171, 424
AclWI GGATC 1 cut(s) 761
AcoI YGGCCR 2 cut(s) 111, 349
AcsI RAATTY 3 cut(s) 431, 442, 479
AfaI GTAC 4 cut(s) 103, 308, 908, 1024
AfiI CCNNNNNNNGG 4 cut(s) 120, 214, 580, 698
AgsI TTSAA 4 cut(s) 239, 524, 612, 973
AjiI CACGTC 1 cut(s) 58
AjnI CCWGG 2 cut(s) 85, 691
AluBI AGCT 5 cut(s) 38, 119, 529, 969, 1015
AluI AGCT 5 cut(s) 38, 119, 529, 969, 1015
Alw21I GWGCWC 1 cut(s) 361
AlwI GGATC 1 cut(s) 761
AlwNI CAGNNNCTG 2 cut(s) 545, 674
Ama87I CYCGRG 1 cut(s) 841
AoxI GGCC 7 cut(s) 105, 111, 205, 349, 689, 694, 1090
ApoI RAATTY 3 cut(s) 431, 442, 479
AspLEI GCGC 1 cut(s) 1160
AspS9I GGNCC 3 cut(s) 206, 689, 1091
AsuHPI GGTGA 3 cut(s) 313, 659, 1063
AsuII TTCGAA 1 cut(s) 429
AsuNHI GCTAGC 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 841
BaeI ACNNNNGTAYC 2 cut(s) 279, 312
BalI TGGCCA 2 cut(s) 113, 351
BanI GGYRCC 1 cut(s) 1174
BanII GRGCYC 1 cut(s) 989
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 4 cut(s) 151, 341, 542, 560
BceAI ACGGC 1 cut(s) 120
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BciT130I CCWGG 2 cut(s) 87, 693
BciVI GTATCC 1 cut(s) 280
BfaI CTAG 3 cut(s) 45, 267, 831
BfuI GTATCC 1 cut(s) 280
Bme1390I CCNGG 2 cut(s) 87, 693
BmeT110I CYCGRG 1 cut(s) 841
BmgBI CACGTC 1 cut(s) 58
BmgT120I GGNCC 3 cut(s) 206, 689, 1091
BmiI GGNNCC 4 cut(s) 208, 219, 255, 1176
BmrFI CCNGG 2 cut(s) 87, 693
BmrI ACTGGG 2 cut(s) 633, 759
BmsI GCATC 5 cut(s) 32, 118, 146, 219, 253
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 2 cut(s) 633, 759
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 429
BsaJI CCNNGG 7 cut(s) 108, 352, 697, 718, 840, 1026, 1170
BsaWI WCCGGW 2 cut(s) 283, 501
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 214, 580, 698
Bse1I ACTGG 3 cut(s) 628, 754, 1138
BseBI CCWGG 2 cut(s) 87, 693
BseDI CCNNGG 7 cut(s) 108, 352, 697, 718, 840, 1026, 1170
BseGI GGATG 3 cut(s) 143, 634, 748
BseLI CCNNNNNNNGG 4 cut(s) 120, 214, 580, 698
BseMII CTCAG 1 cut(s) 935
BseNI ACTGG 3 cut(s) 628, 754, 1138
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 7 cut(s) 107, 113, 207, 351, 691, 696, 1092
BshNI GGYRCC 1 cut(s) 1174
BsiHKAI GWGCWC 1 cut(s) 361
BsiHKCI CYCGRG 1 cut(s) 841
BsiSI CCGG 2 cut(s) 284, 502
BslFI GGGAC 2 cut(s) 187, 352
BslI CCNNNNNNNGG 4 cut(s) 120, 214, 580, 698
BsmFI GGGAC 2 cut(s) 187, 352
BsnI GGCC 7 cut(s) 107, 113, 207, 351, 691, 696, 1092
BsoBI CYCGRG 1 cut(s) 841
Bsp119I TTCGAA 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 361, 989
Bsp143I GATC 3 cut(s) 753, 954, 1066
Bsp19I CCATGG 1 cut(s) 697
BspACI CCGC 3 cut(s) 147, 171, 424
BspANI GGCC 7 cut(s) 107, 113, 207, 351, 691, 696, 1092
BspCNI CTCAG 1 cut(s) 934
BspFNI CGCG 1 cut(s) 149
BspLI GGNNCC 4 cut(s) 208, 219, 255, 1176
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 761
BspT104I TTCGAA 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 1174
BsrBI CCGCTC 1 cut(s) 171
BsrI ACTGG 3 cut(s) 628, 754, 1138
BssECI CCNNGG 7 cut(s) 108, 352, 697, 718, 840, 1026, 1170
BssMI GATC 3 cut(s) 753, 954, 1066
BssNAI GTATAC 1 cut(s) 848
BssT1I CCWWGG 5 cut(s) 108, 352, 697, 718, 1170
Bst1107I GTATAC 1 cut(s) 848
Bst2UI CCWGG 2 cut(s) 87, 693
Bst4CI ACNGT 6 cut(s) 77, 635, 670, 794, 1038, 1079
Bst6I CTCTTC 2 cut(s) 414, 1185
BstBI TTCGAA 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 921
BstDSI CCRYGG 2 cut(s) 697, 1026
BstF5I GGATG 3 cut(s) 143, 634, 748
BstFNI CGCG 1 cut(s) 149
BstHHI GCGC 1 cut(s) 1160
BstKTI GATC 3 cut(s) 756, 957, 1069
BstMBI GATC 3 cut(s) 753, 954, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 590, 714
BstNI CCWGG 2 cut(s) 87, 693
BstNSI RCATGY 3 cut(s) 135, 319, 497
BstSCI CCNGG 2 cut(s) 85, 691
BstUI CGCG 1 cut(s) 149
BstZ17I GTATAC 1 cut(s) 848
BsuI GTATCC 1 cut(s) 280
BsuRI GGCC 7 cut(s) 107, 113, 207, 351, 691, 696, 1092
BtgI CCRYGG 2 cut(s) 697, 1026
BtgZI GCGATG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 58
BtsCI GGATG 3 cut(s) 143, 634, 748
BtsI GCAGTG 1 cut(s) 834
BtsIMutI CAGTG 3 cut(s) 675, 834, 929
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 2 cut(s) 545, 674
CfoI GCGC 1 cut(s) 1160
Cfr13I GGNCC 3 cut(s) 206, 689, 1091
Csp6I GTAC 4 cut(s) 102, 307, 907, 1023
CviAII CATG 6 cut(s) 41, 132, 316, 494, 698, 868
CviQI GTAC 4 cut(s) 102, 307, 907, 1023
DdeI CTNAG 1 cut(s) 921
DpnI GATC 3 cut(s) 755, 956, 1068
DpnII GATC 3 cut(s) 753, 954, 1066
EaeI YGGCCR 2 cut(s) 111, 349
Eam1104I CTCTTC 2 cut(s) 414, 1185
EarI CTCTTC 2 cut(s) 414, 1185
Eco130I CCWWGG 5 cut(s) 108, 352, 697, 718, 1170
Eco24I GRGCYC 1 cut(s) 989
Eco88I CYCGRG 1 cut(s) 841
EcoO109I RGGNCCY 2 cut(s) 206, 1091
EcoRI GAATTC 1 cut(s) 431
EcoRII CCWGG 2 cut(s) 85, 691
EcoT14I CCWWGG 5 cut(s) 108, 352, 697, 718, 1170
EcoT22I ATGCAT 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 989
ErhI CCWWGG 5 cut(s) 108, 352, 697, 718, 1170
FaeI CATG 6 cut(s) 44, 135, 319, 497, 701, 871
FalI AAGNNNNNCTT 4 cut(s) 345, 377, 1080, 1112
FaqI GGGAC 2 cut(s) 187, 352
FatI CATG 6 cut(s) 40, 131, 315, 493, 697, 867
FauI CCCGC 1 cut(s) 164
FblI GTMKAC 1 cut(s) 847
FokI GGATG 3 cut(s) 130, 641, 755
FriOI GRGCYC 1 cut(s) 989
FspBI CTAG 3 cut(s) 45, 267, 831
GlaI GCGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 7 cut(s) 107, 113, 207, 351, 691, 696, 1092
HapII CCGG 2 cut(s) 284, 502
HhaI GCGC 1 cut(s) 1160
Hin1II CATG 6 cut(s) 44, 135, 319, 497, 701, 871
Hin6I GCGC 1 cut(s) 1158
HinP1I GCGC 1 cut(s) 1158
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 2 cut(s) 117, 1013
HinfI GANTC 5 cut(s) 370, 570, 653, 801, 818
HpaII CCGG 2 cut(s) 284, 502
HphI GGTGA 3 cut(s) 313, 659, 1063
Hpy166II GTNNAC 3 cut(s) 848, 929, 1056
Hpy188I TCNGA 3 cut(s) 94, 168, 203
Hpy188III TCNNGA 3 cut(s) 455, 815, 973
Hpy8I GTNNAC 3 cut(s) 848, 929, 1056
HpyAV CCTTC 1 cut(s) 834
HpyCH4III ACNGT 6 cut(s) 77, 635, 670, 794, 1038, 1079
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 9 cut(s) 68, 80, 131, 137, 232, 402, 507, 771, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 590, 714
HpyF3I CTNAG 1 cut(s) 921
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 6 cut(s) 44, 135, 319, 497, 701, 871
HspAI GCGC 1 cut(s) 1158
Kzo9I GATC 3 cut(s) 753, 954, 1066
LmnI GCTCC 3 cut(s) 223, 259, 356
LweI GCATC 5 cut(s) 32, 118, 146, 219, 253
MaeI CTAG 3 cut(s) 45, 267, 831
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 6 cut(s) 58, 670, 679, 745, 881, 1138
MalI GATC 3 cut(s) 755, 956, 1068
MbiI CCGCTC 1 cut(s) 171
MboI GATC 3 cut(s) 753, 954, 1066
MboII GAAGA 3 cut(s) 401, 746, 1172
MfeI CAATTG 1 cut(s) 902
MhlI GDGCHC 2 cut(s) 361, 989
MlsI TGGCCA 2 cut(s) 113, 351
MluCI AATT 7 cut(s) 397, 431, 442, 479, 766, 902, 1128
MluNI TGGCCA 2 cut(s) 113, 351
MlyI GAGTC 1 cut(s) 647
Mox20I TGGCCA 2 cut(s) 113, 351
Mph1103I ATGCAT 1 cut(s) 133
MscI TGGCCA 2 cut(s) 113, 351
MseI TTAA 7 cut(s) 185, 417, 471, 762, 873, 951, 981
MslI CAYNNNNRTG 3 cut(s) 45, 314, 492
Msp20I TGGCCA 2 cut(s) 113, 351
MspI CCGG 2 cut(s) 284, 502
MspR9I CCNGG 2 cut(s) 87, 693
MunI CAATTG 1 cut(s) 902
MvaI CCWGG 2 cut(s) 87, 693
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 2 cut(s) 590, 714
NcoI CCATGG 1 cut(s) 697
NdeII GATC 3 cut(s) 753, 954, 1066
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 6 cut(s) 44, 135, 319, 497, 701, 871
NlaIV GGNNCC 4 cut(s) 208, 219, 255, 1176
NmuCI GTSAC 4 cut(s) 58, 670, 745, 1138
NsiI ATGCAT 1 cut(s) 133
NspI RCATGY 3 cut(s) 135, 319, 497
NspV TTCGAA 1 cut(s) 429
PcsI WCGNNNNNNNCGW 2 cut(s) 146, 1034
PfeI GAWTC 4 cut(s) 370, 570, 801, 818
PflMI CCANNNNNTGG 2 cut(s) 120, 698
PleI GAGTC 1 cut(s) 647
PpsI GAGTC 1 cut(s) 647
Psp6I CCWGG 2 cut(s) 85, 691
PspGI CCWGG 2 cut(s) 85, 691
PspN4I GGNNCC 4 cut(s) 208, 219, 255, 1176
PspPI GGNCC 3 cut(s) 206, 689, 1091
PstNI CAGNNNCTG 2 cut(s) 545, 674
RsaI GTAC 4 cut(s) 103, 308, 908, 1024
RsaNI GTAC 4 cut(s) 102, 307, 907, 1023
RseI CAYNNNNRTG 3 cut(s) 45, 314, 492
SaqAI TTAA 7 cut(s) 185, 417, 471, 762, 873, 951, 981
Sau3AI GATC 3 cut(s) 753, 954, 1066
Sau96I GGNCC 3 cut(s) 206, 689, 1091
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 87, 693
SduI GDGCHC 2 cut(s) 361, 989
SfaNI GCATC 5 cut(s) 32, 118, 146, 219, 253
SfuI TTCGAA 1 cut(s) 429
SmiMI CAYNNNNRTG 3 cut(s) 45, 314, 492
Sse9I AATT 7 cut(s) 397, 431, 442, 479, 766, 902, 1128
SsiI CCGC 3 cut(s) 147, 171, 424
SspMI CTAG 3 cut(s) 45, 267, 831
StyD4I CCNGG 2 cut(s) 85, 691
StyI CCWWGG 5 cut(s) 108, 352, 697, 718, 1170
TaaI ACNGT 6 cut(s) 77, 635, 670, 794, 1038, 1079
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 429, 587
TasI AATT 7 cut(s) 397, 431, 442, 479, 766, 902, 1128
TatI WGTACW 2 cut(s) 306, 906
TfiI GAWTC 4 cut(s) 370, 570, 801, 818
Tru1I TTAA 7 cut(s) 185, 417, 471, 762, 873, 951, 981
Tru9I TTAA 7 cut(s) 185, 417, 471, 762, 873, 951, 981
TscAI CASTG 3 cut(s) 675, 841, 929
TseFI GTSAC 4 cut(s) 58, 670, 745, 1138
Tsp45I GTSAC 4 cut(s) 58, 670, 745, 1138
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 3 cut(s) 675, 841, 929
Van91I CCANNNNNTGG 2 cut(s) 120, 698
XapI RAATTY 3 cut(s) 431, 442, 479
XceI RCATGY 3 cut(s) 135, 319, 497
XmiI GTMKAC 1 cut(s) 847
XspI CTAG 3 cut(s) 45, 267, 831
Zsp2I ATGCAT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.