Rmu_sc0001066.1_g000015

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001066.1
OG0000434
Physical Location & Seq
Forward (+)
73469 .. 74296
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001066.1_g000015.1.cds

Sequence Viewer

Length: 828 bp
atggtcaccgtcgccaacaccagcatcggaactggagatgattgtatttccatcggtgatgggacttcacaacttaaatttaccaacgtgacttgcggaccaggccatggcataagcattggaagcctcggagggcatcgcgatgaacaacctgtaactggcgtcataatcaagaatgtaacattcaataatacgcagaatggtgcaagaatcaagacttggccggcctcttatgccgggcttgtgtcagatatacactatgaggatattaccatggttaatgtcagaaacccgatcattatagaccaagagtactgcccatggaatttgtgcaacaagcagattccttcaaaagttaagatcagtaatgtgagcatcaagaacattaaaggcacgtccacaactccgcatgcggtaaattttatttgtagcaggagcgtgccatgcgagaatgtggatatttccggcattgatctcacgtatactggacacaaaggactaattaattcacattgctccaatgtcaaactccctacgattgttaacgtgacaaaggctcttgcttgtggtaaccatccaccaataattacatcaaaggaccactccaagagtcatacttcaacaattagtcgatcaaagaattaccagaccgagacgagaaaccagattgattctgttgtagggaatgagccaaccagaggtcatcatcgtaagtatggtctgattgcgacgtcctcggccccagaaagagatgattacttttcaacagtgtcgtcctccgctccaaagagtcgcagtacttatgggtggctacaaccgatgccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

275

Amino Acids

29.75

Weight (kDa)

8.86

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 734
AccB7I CCANNNNNTGG 1 cut(s) 107
AccBSI CCGCTC 1 cut(s) 782
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 141
AciI CCGC 4 cut(s) 96, 407, 413, 780
AcoI YGGCCR 1 cut(s) 221
AcsI RAATTY 3 cut(s) 77, 325, 418
AcyI GRCGYC 2 cut(s) 162, 731
AfaI GTAC 2 cut(s) 314, 799
AfiI CCNNNNNNNGG 3 cut(s) 107, 158, 698
AgsI TTSAA 4 cut(s) 187, 351, 621, 765
AjiI CACGTC 1 cut(s) 396
AjnI CCWGG 1 cut(s) 100
AjuI GAANNNNNNNTTGG 2 cut(s) 202, 234
Alw26I GTCTC 1 cut(s) 647
AoxI GGCC 4 cut(s) 103, 221, 225, 738
ApoI RAATTY 3 cut(s) 77, 325, 418
AseI ATTAAT 1 cut(s) 504
AspS9I GGNCC 3 cut(s) 98, 598, 739
AsuC2I CCSGG 1 cut(s) 238
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 2 cut(s) 98, 598
BccI CCATC 3 cut(s) 53, 59, 582
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 647
BmcAI AGTACT 2 cut(s) 314, 799
Bme1390I CCNGG 2 cut(s) 102, 238
Bme18I GGWCC 2 cut(s) 98, 598
BmgBI CACGTC 1 cut(s) 396
BmgT120I GGNCC 3 cut(s) 98, 598, 739
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 2 cut(s) 102, 238
BmsI GCATC 4 cut(s) 33, 145, 384, 810
BpmI CTGGAG 1 cut(s) 54
BpuMI CCSGG 1 cut(s) 238
BsaAI YACGTR 1 cut(s) 480
BsaHI GRCGYC 2 cut(s) 162, 731
BsaJI CCNNGG 5 cut(s) 106, 127, 273, 320, 735
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 158, 698
Bse118I RCCGGY 1 cut(s) 223
Bse1I ACTGG 3 cut(s) 37, 163, 490
Bse3DI GCAATG 1 cut(s) 511
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 5 cut(s) 106, 127, 273, 320, 735
BseGI GGATG 1 cut(s) 574
BseLI CCNNNNNNNGG 3 cut(s) 107, 158, 698
BseMI GCAATG 1 cut(s) 511
BseNI ACTGG 3 cut(s) 37, 163, 490
Bsh1236I CGCG 1 cut(s) 141
BshFI GGCC 4 cut(s) 105, 223, 227, 740
BsiSI CCGG 3 cut(s) 224, 237, 465
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 3 cut(s) 107, 158, 698
BsmAI GTCTC 1 cut(s) 647
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 4 cut(s) 105, 223, 227, 740
Bsp143I GATC 4 cut(s) 294, 360, 472, 632
Bsp19I CCATGG 3 cut(s) 106, 273, 320
Bsp68I TCGCGA 1 cut(s) 141
BspACI CCGC 4 cut(s) 96, 407, 413, 780
BspANI GGCC 4 cut(s) 105, 223, 227, 740
BspFNI CGCG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 741
BsrBI CCGCTC 1 cut(s) 782
BsrDI GCAATG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 223
BsrI ACTGG 3 cut(s) 37, 163, 490
BssAI RCCGGY 1 cut(s) 223
BssECI CCNNGG 5 cut(s) 106, 127, 273, 320, 735
BssMI GATC 4 cut(s) 294, 360, 472, 632
BssNAI GTATAC 1 cut(s) 483
BssNI GRCGYC 2 cut(s) 162, 731
BssT1I CCWWGG 3 cut(s) 106, 273, 320
Bst1107I GTATAC 1 cut(s) 483
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 2 cut(s) 10, 769
BstACI GRCGYC 2 cut(s) 162, 731
BstBAI YACGTR 1 cut(s) 480
BstC8I GCNNGC 3 cut(s) 225, 411, 440
BstDSI CCRYGG 3 cut(s) 106, 273, 320
BstEII GGTNACC 2 cut(s) 4, 569
BstF5I GGATG 1 cut(s) 574
BstFNI CGCG 1 cut(s) 141
BstKTI GATC 4 cut(s) 297, 363, 475, 635
BstMAI GTCTC 1 cut(s) 647
BstMBI GATC 4 cut(s) 294, 360, 472, 632
BstMWI GCNNNNNNNGC 4 cut(s) 102, 123, 233, 444
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 1 cut(s) 413
BstPI GGTNACC 2 cut(s) 4, 569
BstSCI CCNGG 2 cut(s) 100, 236
BstUI CGCG 1 cut(s) 141
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 4 cut(s) 105, 223, 227, 740
BtgI CCRYGG 3 cut(s) 106, 273, 320
BtgZI GCGATG 2 cut(s) 122, 156
BtrI CACGTC 1 cut(s) 396
BtsCI GGATG 1 cut(s) 574
BtsIMutI CAGTG 1 cut(s) 774
BtuMI TCGCGA 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 225, 411, 440
Cfr10I RCCGGY 1 cut(s) 223
Cfr13I GGNCC 3 cut(s) 98, 598, 739
CseI GACGC 1 cut(s) 151
Csp6I GTAC 2 cut(s) 313, 798
CviAII CATG 5 cut(s) 107, 274, 321, 410, 444
CviJI RGCY 9 cut(s) 105, 126, 223, 227, 241, 557, 691, 740, 811
CviKI_1 RGCY 9 cut(s) 105, 126, 223, 227, 241, 557, 691, 740, 811
CviQI GTAC 2 cut(s) 313, 798
DpnI GATC 4 cut(s) 296, 362, 474, 634
DpnII GATC 4 cut(s) 294, 360, 472, 632
EaeI YGGCCR 1 cut(s) 221
Eco130I CCWWGG 3 cut(s) 106, 273, 320
Eco47I GGWCC 2 cut(s) 98, 598
Eco91I GGTNACC 2 cut(s) 4, 569
EcoO65I GGTNACC 2 cut(s) 4, 569
EcoRII CCWGG 1 cut(s) 100
EcoT14I CCWWGG 3 cut(s) 106, 273, 320
ErhI CCWWGG 3 cut(s) 106, 273, 320
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 5 cut(s) 110, 277, 324, 413, 447
FaqI GGGAC 1 cut(s) 76
FatI CATG 5 cut(s) 106, 273, 320, 409, 443
FblI GTMKAC 1 cut(s) 482
FokI GGATG 1 cut(s) 561
FseI GGCCGGCC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 4 cut(s) 105, 223, 227, 740
HapII CCGG 3 cut(s) 224, 237, 465
HgaI GACGC 1 cut(s) 151
Hin1I GRCGYC 2 cut(s) 162, 731
Hin1II CATG 5 cut(s) 110, 277, 324, 413, 447
HincII GTYRAC 1 cut(s) 544
HindII GTYRAC 1 cut(s) 544
HinfI GANTC 5 cut(s) 210, 343, 610, 671, 790
HpaI GTTAAC 1 cut(s) 544
HpaII CCGG 3 cut(s) 224, 237, 465
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 3 cut(s) 399, 483, 544
Hpy188I TCNGA 5 cut(s) 29, 131, 250, 287, 723
Hpy188III TCNNGA 4 cut(s) 140, 172, 214, 379
Hpy8I GTNNAC 3 cut(s) 399, 483, 544
Hpy99I CGWCG 2 cut(s) 14, 733
HpyAV CCTTC 1 cut(s) 357
HpyCH4III ACNGT 2 cut(s) 10, 769
HpyCH4IV ACGT 5 cut(s) 87, 395, 479, 546, 731
HpyCH4V TGCA 2 cut(s) 206, 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 123, 233, 444
HpySE526I ACGT 5 cut(s) 87, 395, 479, 546, 731
Hsp92I GRCGYC 2 cut(s) 162, 731
Hsp92II CATG 5 cut(s) 110, 277, 324, 413, 447
KroI GCCGGC 1 cut(s) 223
KroNI GCCGGC 1 cut(s) 225
KspAI GTTAAC 1 cut(s) 544
Kzo9I GATC 4 cut(s) 294, 360, 472, 632
LmnI GCTCC 3 cut(s) 435, 521, 787
LweI GCATC 4 cut(s) 33, 145, 384, 810
MaeII ACGT 5 cut(s) 87, 395, 479, 546, 731
MaeIII GTNAC 6 cut(s) 4, 88, 154, 178, 547, 569
MalI GATC 4 cut(s) 296, 362, 474, 634
MbiI CCGCTC 1 cut(s) 782
MboI GATC 4 cut(s) 294, 360, 472, 632
MluCI AATT 8 cut(s) 77, 325, 418, 501, 505, 585, 624, 640
MlyI GAGTC 2 cut(s) 619, 799
MnlI CCTC 7 cut(s) 125, 137, 238, 256, 692, 745, 787
MroNI GCCGGC 1 cut(s) 223
MseI TTAA 6 cut(s) 75, 279, 357, 387, 504, 543
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 3 cut(s) 224, 237, 465
MspR9I CCNGG 2 cut(s) 102, 238
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 102, 123, 233, 444
NaeI GCCGGC 1 cut(s) 225
NciI CCSGG 1 cut(s) 238
NcoI CCATGG 3 cut(s) 106, 273, 320
NdeII GATC 4 cut(s) 294, 360, 472, 632
NgoMIV GCCGGC 1 cut(s) 223
NlaIII CATG 5 cut(s) 110, 277, 324, 413, 447
NlaIV GGNNCC 1 cut(s) 741
NmeAIII GCCGAG 1 cut(s) 716
NmuCI GTSAC 3 cut(s) 4, 88, 547
NruI TCGCGA 1 cut(s) 141
NspI RCATGY 1 cut(s) 413
PaeI GCATGC 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 210, 343, 671
PflMI CCANNNNNTGG 1 cut(s) 107
PleI GAGTC 2 cut(s) 618, 798
PpsI GAGTC 2 cut(s) 618, 798
Ppu21I YACGTR 1 cut(s) 480
PshBI ATTAAT 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 100
PspEI GGTNACC 2 cut(s) 4, 569
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 3 cut(s) 98, 598, 739
RigI GGCCGGCC 1 cut(s) 227
RruI TCGCGA 1 cut(s) 141
RsaI GTAC 2 cut(s) 314, 799
RsaNI GTAC 2 cut(s) 313, 798
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 6 cut(s) 75, 279, 357, 387, 504, 543
Sau3AI GATC 4 cut(s) 294, 360, 472, 632
Sau96I GGNCC 3 cut(s) 98, 598, 739
ScaI AGTACT 2 cut(s) 314, 799
SchI GAGTC 2 cut(s) 619, 799
ScrFI CCNGG 2 cut(s) 102, 238
SetI ASST 7 cut(s) 90, 154, 398, 482, 549, 703, 734
SfaNI GCATC 4 cut(s) 33, 145, 384, 810
SinI GGWCC 2 cut(s) 98, 598
SmiMI CAYNNNNRTG 1 cut(s) 141
SphI GCATGC 1 cut(s) 413
Sse9I AATT 8 cut(s) 77, 325, 418, 501, 505, 585, 624, 640
SsiI CCGC 4 cut(s) 96, 407, 413, 780
StyD4I CCNGG 2 cut(s) 100, 236
StyI CCWWGG 3 cut(s) 106, 273, 320
TaaI ACNGT 2 cut(s) 10, 769
TaiI ACGT 5 cut(s) 90, 398, 482, 549, 734
TaqI TCGA 1 cut(s) 631
TaqII GACCGA 1 cut(s) 665
TasI AATT 8 cut(s) 77, 325, 418, 501, 505, 585, 624, 640
TatI WGTACW 2 cut(s) 312, 797
TfiI GAWTC 3 cut(s) 210, 343, 671
Tru1I TTAA 6 cut(s) 75, 279, 357, 387, 504, 543
Tru9I TTAA 6 cut(s) 75, 279, 357, 387, 504, 543
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 3 cut(s) 4, 88, 547
Tsp45I GTSAC 3 cut(s) 4, 88, 547
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 774
Van91I CCANNNNNTGG 1 cut(s) 107
VpaK11BI GGWCC 2 cut(s) 98, 598
VspI ATTAAT 1 cut(s) 504
XapI RAATTY 3 cut(s) 77, 325, 418
XceI RCATGY 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 482
ZraI GACGTC 1 cut(s) 732
ZrmI AGTACT 2 cut(s) 314, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.