FvH4_2g29545

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000509
Physical Location & Seq
Reverse (-)
22894399 .. 22900450
6052 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29545.t2

Sequence Viewer

Length: 2421 bp
ATGGCTAGCATGAGTGATAACATCAGAAAAGAATTTTGTGCTCTAATTTGCTTAATATCTTTATTTAGCTTCTTTTTATCTTCATCTCTTGCAACGGACACACTAACACCTGAAGGCACACTGTCAGTCAATCAAACCCTGGTTTCAGCTGGTGATATTTTTGAGCTTGGCTTCTTCAAGAGTAACTTTTCAGGTGGTTACTATCTGGGAATTTGGTTCAAAGCTGATGCAAACAAGGTTGTTTGGGTTGGTAACCGCCAAATTCCCATATTGGACACTTCAGCAAGTCTTCAAATACTATCTGGGAATCTGGTTCTTACAGACCGGCATCAAAAGCCTTTACTTGTTAGTACAGGAAATGTTGCCATGGCCATAAATACAACCGCAGTACTTCTTGACTCTGGGAATTTTATCCTTAAAGAAGCAAATACAGGTACTATGTTATGGCAAAGTTTTGATGTTCCTACTGATACTTATCTTCCTGGTATGAAACTCGGTTGGTATCAGCTTAACAGTTACCAGCCAGTCTATCACTTTTTTGTTTCTTGGGTGAACCCTCAAAATCCTGCTACTGGAAACTTTACCTTAGCCATGCACAGGATCAACTTTACAAAGCTTATGGTTTGGCAAGGAGATAATAATCAAATGGATGTTGGGTTTTGGGATGGACATAAAGTGCAGTTTATTTTTGATAACTCAACAAGTGGAAATGACTACAATTTTAGTTACCACTCCAATGCAGATGAAGCCTACTTTACTTTTAGTGGCAATAAAACTTATGACCTCATGTGGTTTGTGATGTCCTCCACAGGAAAGCTAGATCAGTATTTTATGGTAGATGGGAAAATTACTTCTGCGAGTAATGCTGTGTGTGATTCAACTGGGAGGTGCTTGAATTCCCTACCATCTATATGTACGAATGGTGATAGTTTTTTACAGGTGAAAGGTTCACTGCCTTCTACTTTTAATAGTGGTTCTATAAATATGGGGACTAGAGATTGTGAATCTTGGTGCCGGAGCAATTGTTCTTGTACTGCATTCGCCTCACCTGATCAGAATGATCAAGTATGTCAACTTTATTATGGGAGTAGACATGATTTATTGAAGATCATAGAGAAGGAGGGAACAGCAGGAGTCATATACATCCGCGGTGGTGCTCCAAGTGGTGGTAAGAAGTGGAAACTCGGGTTAGCTCTCATGGTTTCTTTGGCTTCTCTCTTGGTTCTTGTTCCAGTTTCTTTATGTTGCTATCTGCATTGGAGAAAGGGGCACAAAGAAAACTCAGTACCAGATGGCAATATCAATTTGGAACAAGCGAGTTTATTCCACATGGCTACTAATGCGTCACCAGTTCAGCTGAATGCAGTTAGAGGTGCAAATAACATGGAGTTGGGCAGGCAGAAGGATCAAGATCTTCCCTTGTTTAGTTTTTCTACAATACAGACTGCAACAAATTATTTCGCGGAGTCTAATAAACTCGGGGAAGGTGGATATGGGCCTGTTTATAAGGGTAAGCTACTAGTAGAAAGGCAAGAAATCGCAGTGAAAAGACTGTCCAAAATTTCCCGCCAAGGGTCAGAGGAATTCAAAAATGAAGTCTCAGTGATCTGTAAGCTTCAACACAGAAACTTGGTCAGGCTTTTGGGATGCTGCATTGACGCAGAAGAAAGTATACTAATTTACGAGTACATGCCCAACAAAAGCCTGGACTTTTTCATTTTTGATTCAACCAAACGGTTACTTTTGGATTGGAGAAAGTGCGTGAACATTGTGGAAGGGATTGCTCAAGGCCTTCTATATCTTCACAAATACTCCCGATTAAGGATCATTCATCGTGATTTAAAGACCAGTAATATCCTGTTGGACTGTGACATGTACCCAAAGATTTCTGATTTTGGCATGGCAAGGATTTTCGGGGACAATGACACTAGAGGCAAAACAAGCCGGGTTGTTGGTACATTTGGTTACATGTCACCGGAGTATGCCATGGATGGTCTCTTTTCTGAAAAATCTGATGTGTTTAGCTTTGGGGTGATCCTATTAGAGATTATAAGTGGCAAGAAGAATATAGCCTTCTTCGAAACTGATCATTCGCTGAACTTACTAGGCAAAGCTTGGACTTTGTGGAAAGAAGGTAACGGGACGGAGTTGATGGATTCGACACTGCATGCTTCTTGTTCAAACAGTGAAGCTATCAGATACATACAGATAGGTCTTCTGTGTGTCCAAGAAAGAGCTATTGATCGACCAACCATGTCTGATGTAGTTTCTCTGCTAAGCAATCAGTCATTTGCTCTGCCAATTCCAAAAGAACCTGCATTTCTGAGTCAGCTAAGTTCCACTAATGCAGATTCATCTTCAAGTAGGCAAAGACGTTACTCTCAGAATGATATAACCATTTCAGAAGTGCATGGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

807

Amino Acids

89.82

Weight (kDa)

6.45

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 4 - 49 1.8e-14 D-mannose binding lectin
PAN_2 PF08276 183 - 237 3.1e-07 PAN-like domain
Pkinase PF00069 366 - 575 1.3e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 368 - 635 1.4e-47 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 643 - 684 4.3e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1506, 2051
Acc36I ACCTGC 2 cut(s) 2323, 2406
AccB1I GGYRCC 1 cut(s) 1011
AccB7I CCANNNNNTGG 1 cut(s) 1166
AccI GTMKAC 2 cut(s) 1090, 1672
AccII CGCG 2 cut(s) 1149, 1463
AciI CCGC 6 cut(s) 256, 384, 1147, 1149, 1463, 1567
AclWI GGATC 4 cut(s) 608, 1413, 1832, 2029
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 7 cut(s) 32, 210, 261, 406, 895, 1560, 1583
AcuI CTGAAG 2 cut(s) 132, 264
AfaI GTAC 9 cut(s) 352, 390, 436, 916, 1033, 1287, 1688, 1877, 1957
AfiI CCNNNNNNNGG 5 cut(s) 572, 597, 1166, 1572, 1821
AflIII ACRYGT 2 cut(s) 1872, 1968
AhlI ACTAGT 1 cut(s) 1519
AjnI CCWGG 3 cut(s) 138, 481, 1704
AloI GAACNNNNNNTCC 2 cut(s) 1009, 1041
Alw21I GWGCWC 2 cut(s) 43, 1159
Alw26I GTCTC 2 cut(s) 1603, 2000
AlwI GGATC 4 cut(s) 608, 1413, 1832, 2029
Ama87I CYCGRG 2 cut(s) 1184, 1478
AoxI GGCC 3 cut(s) 369, 1496, 1789
ApeKI GCWGC 1 cut(s) 1650
ApoI RAATTY 7 cut(s) 32, 210, 261, 406, 895, 1560, 1583
ArsI GACNNNNNNTTYG 2 cut(s) 1581, 1613
AspS9I GGNCC 1 cut(s) 1496
AsuC2I CCSGG 1 cut(s) 1946
AsuHPI GGTGA 8 cut(s) 164, 562, 935, 952, 1038, 1338, 1965, 2044
AsuII TTCGAA 1 cut(s) 2079
AsuNHI GCTAGC 1 cut(s) 5
AvaI CYCGRG 2 cut(s) 1184, 1478
BaeGI GKGCMC 1 cut(s) 1272
BalI TGGCCA 1 cut(s) 371
BanI GGYRCC 1 cut(s) 1011
BarI GAAGNNNNNNTAC 2 cut(s) 1656, 1688
BbsI GAAGAC 2 cut(s) 281, 2207
Bbv12I GWGCWC 2 cut(s) 43, 1159
BbvI GCAGC 1 cut(s) 1637
BccI CCATC 6 cut(s) 659, 833, 913, 1286, 1985, 2146
BciT130I CCWGG 3 cut(s) 140, 483, 1706
BclI TGATCA 3 cut(s) 1051, 1060, 2086
BcnI CCSGG 1 cut(s) 1946
BcoDI GTCTC 2 cut(s) 1603, 2000
BcuI ACTAGT 1 cut(s) 1519
BfaI CTAG 6 cut(s) 6, 818, 993, 1520, 1929, 2105
BfuAI ACCTGC 2 cut(s) 2323, 2406
BglII AGATCT 1 cut(s) 1411
BisI GCNGC 1 cut(s) 1651
BlpI GCTNAGC 1 cut(s) 2276
BlsI GCNGC 1 cut(s) 1652
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 4 cut(s) 140, 483, 1706, 1946
BmeT110I CYCGRG 2 cut(s) 1184, 1478
BmgT120I GGNCC 1 cut(s) 1496
BmiI GGNNCC 1 cut(s) 1013
BmrFI CCNGG 4 cut(s) 140, 483, 1706, 1946
BmrI ACTGGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 217, 337, 1637
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 891
BpiI GAAGAC 2 cut(s) 281, 2207
Bpu10I CCTNAGC 1 cut(s) 586
Bpu1102I GCTNAGC 1 cut(s) 2276
Bpu14I TTCGAA 1 cut(s) 2079
BpuEI CTTGAG 1 cut(s) 1770
BpuMI CCSGG 1 cut(s) 1946
BsaBI GATNNNNATC 3 cut(s) 474, 639, 1410
BsaI GGTCTC 1 cut(s) 2000
BsaJI CCNNGG 5 cut(s) 138, 366, 1147, 1570, 1986
BsaWI WCCGGW 1 cut(s) 1975
BsaXI ACNNNNNCTCC 4 cut(s) 1009, 1039, 1796, 1826
Bsc4I CCNNNNNNNGG 5 cut(s) 572, 597, 1166, 1572, 1821
Bse118I RCCGGY 1 cut(s) 324
Bse1I ACTGG 6 cut(s) 524, 577, 886, 1232, 1349, 1848
Bse8I GATNNNNATC 3 cut(s) 474, 639, 1410
BseBI CCWGG 3 cut(s) 140, 483, 1706
BseDI CCNNGG 5 cut(s) 138, 366, 1147, 1570, 1986
BseGI GGATG 5 cut(s) 655, 670, 1143, 1652, 1996
BseJI GATNNNNATC 3 cut(s) 474, 639, 1410
BseLI CCNNNNNNNGG 5 cut(s) 572, 597, 1166, 1572, 1821
BseMII CTCAG 4 cut(s) 1296, 1614, 2315, 2396
BseNI ACTGG 6 cut(s) 524, 577, 886, 1232, 1349, 1848
BseSI GKGCMC 1 cut(s) 1272
BseXI GCAGC 1 cut(s) 1637
BsgI GTGCAG 1 cut(s) 698
Bsh1236I CGCG 2 cut(s) 1149, 1463
BshFI GGCC 3 cut(s) 371, 1498, 1791
BshNI GGYRCC 1 cut(s) 1011
BsiHKAI GWGCWC 2 cut(s) 43, 1159
BsiHKCI CYCGRG 2 cut(s) 1184, 1478
BsiSI CCGG 4 cut(s) 325, 1015, 1945, 1976
BslFI GGGAC 3 cut(s) 1003, 1931, 2155
BslI CCNNNNNNNGG 5 cut(s) 572, 597, 1166, 1572, 1821
BsmAI GTCTC 2 cut(s) 1603, 2000
BsmFI GGGAC 3 cut(s) 1003, 1931, 2155
BsmI GAATGC 2 cut(s) 1037, 1366
BsnI GGCC 3 cut(s) 371, 1498, 1791
Bso31I GGTCTC 1 cut(s) 2000
BsoBI CYCGRG 2 cut(s) 1184, 1478
Bsp119I TTCGAA 1 cut(s) 2079
Bsp1286I GDGCHC 3 cut(s) 43, 1159, 1272
Bsp1720I GCTNAGC 1 cut(s) 2276
Bsp19I CCATGG 2 cut(s) 366, 1986
BspACI CCGC 6 cut(s) 256, 384, 1147, 1149, 1463, 1567
BspANI GGCC 3 cut(s) 371, 1498, 1791
BspCNI CTCAG 4 cut(s) 1295, 1613, 2316, 2395
BspFNI CGCG 2 cut(s) 1149, 1463
BspLI GGNNCC 1 cut(s) 1013
BspMI ACCTGC 2 cut(s) 2323, 2406
BspOI GCTAGC 1 cut(s) 9
BspPI GGATC 4 cut(s) 608, 1413, 1832, 2029
BspT104I TTCGAA 1 cut(s) 2079
BspT107I GGYRCC 1 cut(s) 1011
BspTNI GGTCTC 1 cut(s) 2000
BsrFI RCCGGY 1 cut(s) 324
BsrI ACTGG 6 cut(s) 524, 577, 886, 1232, 1349, 1848
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 5 cut(s) 138, 366, 1147, 1570, 1986
BssNAI GTATAC 1 cut(s) 1673
BssT1I CCWWGG 3 cut(s) 366, 1570, 1986
Bst1107I GTATAC 1 cut(s) 1673
Bst2UI CCWGG 3 cut(s) 140, 483, 1706
Bst4CI ACNGT 6 cut(s) 123, 515, 1554, 1737, 1868, 2186
BstBI TTCGAA 1 cut(s) 2079
BstC8I GCNNGC 3 cut(s) 7, 1397, 2169
BstDEI CTNAG 7 cut(s) 586, 1282, 1600, 2276, 2324, 2333, 2382
BstDSI CCRYGG 3 cut(s) 366, 1147, 1986
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 5 cut(s) 655, 670, 1143, 1652, 1996
BstFNI CGCG 2 cut(s) 1149, 1463
BstMAI GTCTC 2 cut(s) 1603, 2000
BstMWI GCNNNNNNNGC 5 cut(s) 334, 746, 863, 1340, 1941
BstNI CCWGG 3 cut(s) 140, 483, 1706
BstNSI RCATGY 4 cut(s) 1693, 1876, 1972, 2171
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 138, 481, 1704, 1944
BstSLI GKGCMC 1 cut(s) 1272
BstUI CGCG 2 cut(s) 1149, 1463
BstV1I GCAGC 1 cut(s) 1637
BstV2I GAAGAC 2 cut(s) 281, 2207
BstX2I RGATCY 1 cut(s) 1411
BstYI RGATCY 1 cut(s) 1411
BstZ17I GTATAC 1 cut(s) 1673
BsuRI GGCC 3 cut(s) 371, 1498, 1791
BtgI CCRYGG 3 cut(s) 366, 1147, 1986
BtsCI GGATG 5 cut(s) 655, 670, 1143, 1652, 1996
BtsI GCAGTG 3 cut(s) 950, 1548, 2162
BtsIMutI CAGTG 6 cut(s) 119, 950, 1548, 1608, 2162, 2191
BveI ACCTGC 2 cut(s) 2323, 2406
Cac8I GCNNGC 3 cut(s) 7, 1397, 2169
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 1496
Cfr42I CCGCGG 1 cut(s) 1150
CseI GACGC 2 cut(s) 1332, 1667
Csp6I GTAC 9 cut(s) 351, 389, 435, 915, 1032, 1286, 1687, 1876, 1956
CviQI GTAC 9 cut(s) 351, 389, 435, 915, 1032, 1286, 1687, 1876, 1956
DdeI CTNAG 7 cut(s) 586, 1282, 1600, 2276, 2324, 2333, 2382
DraI TTTAAA 1 cut(s) 1842
EaeI YGGCCR 1 cut(s) 369
Eco130I CCWWGG 3 cut(s) 366, 1570, 1986
Eco147I AGGCCT 1 cut(s) 1791
Eco31I GGTCTC 1 cut(s) 2000
Eco57I CTGAAG 2 cut(s) 132, 264
Eco88I CYCGRG 2 cut(s) 1184, 1478
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 2 cut(s) 895, 1583
EcoRII CCWGG 3 cut(s) 138, 481, 1704
EcoT14I CCWWGG 3 cut(s) 366, 1570, 1986
ErhI CCWWGG 3 cut(s) 366, 1570, 1986
FalI AAGNNNNNCTT 2 cut(s) 170, 202
FaqI GGGAC 3 cut(s) 1003, 1931, 2155
FauI CCCGC 1 cut(s) 1574
FbaI TGATCA 3 cut(s) 1051, 1060, 2086
FblI GTMKAC 2 cut(s) 1090, 1672
Fnu4HI GCNGC 1 cut(s) 1651
FokI GGATG 5 cut(s) 662, 677, 1130, 1659, 2003
Fsp4HI GCNGC 1 cut(s) 1651
FspBI CTAG 6 cut(s) 6, 818, 993, 1520, 1929, 2105
GluI GCNGC 1 cut(s) 1651
HaeIII GGCC 3 cut(s) 371, 1498, 1791
HapII CCGG 4 cut(s) 325, 1015, 1945, 1976
HgaI GACGC 2 cut(s) 1332, 1667
HincII GTYRAC 1 cut(s) 1073
HindII GTYRAC 1 cut(s) 1073
HindIII AAGCTT 3 cut(s) 614, 1613, 2112
HpaII CCGG 4 cut(s) 325, 1015, 1945, 1976
HphI GGTGA 8 cut(s) 164, 562, 935, 952, 1038, 1338, 1965, 2044
Hpy166II GTNNAC 6 cut(s) 553, 950, 1073, 1091, 1673, 1765
Hpy188III TCNNGA 5 cut(s) 178, 395, 1409, 1815, 1835
Hpy8I GTNNAC 6 cut(s) 553, 950, 1073, 1091, 1673, 1765
HpyAV CCTTC 9 cut(s) 107, 966, 1111, 1396, 1478, 1769, 1802, 2083, 2126
HpyCH4III ACNGT 6 cut(s) 123, 515, 1554, 1737, 1868, 2186
HpyCH4IV ACGT 1 cut(s) 2374
HpyF10VI GCNNNNNNNGC 5 cut(s) 334, 746, 863, 1340, 1941
HpyF3I CTNAG 7 cut(s) 586, 1282, 1600, 2276, 2324, 2333, 2382
HpySE526I ACGT 1 cut(s) 2374
Ksp22I TGATCA 3 cut(s) 1051, 1060, 2086
KspI CCGCGG 1 cut(s) 1150
LmnI GCTCC 2 cut(s) 1017, 1162
Lsp1109I GCAGC 1 cut(s) 1637
LweI GCATC 3 cut(s) 217, 337, 1637
MaeI CTAG 6 cut(s) 6, 818, 993, 1520, 1929, 2105
MaeII ACGT 1 cut(s) 2374
MfeI CAATTG 1 cut(s) 1021
MflI RGATCY 1 cut(s) 1411
MhlI GDGCHC 3 cut(s) 43, 1159, 1272
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 4 cut(s) 392, 1143, 1475, 2335
MmeI TCCRAC 1 cut(s) 1842
MnlI CCTC 9 cut(s) 567, 794, 814, 879, 1054, 1114, 1364, 1573, 1925
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 6 cut(s) 53, 417, 510, 966, 1820, 1841
MslI CAYNNNNRTG 2 cut(s) 735, 910
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 3 cut(s) 149, 1149, 1357
MspI CCGG 4 cut(s) 325, 1015, 1945, 1976
MspR9I CCNGG 4 cut(s) 140, 483, 1706, 1946
MunI CAATTG 1 cut(s) 1021
Mva1269I GAATGC 2 cut(s) 1037, 1366
MvaI CCWGG 3 cut(s) 140, 483, 1706
MvnI CGCG 2 cut(s) 1149, 1463
MwoI GCNNNNNNNGC 5 cut(s) 334, 746, 863, 1340, 1941
NciI CCSGG 1 cut(s) 1946
NcoI CCATGG 2 cut(s) 366, 1986
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 1013
NmuCI GTSAC 3 cut(s) 1344, 1868, 1971
NspI RCATGY 4 cut(s) 1693, 1876, 1972, 2171
NspV TTCGAA 1 cut(s) 2079
PaeI GCATGC 1 cut(s) 2171
PceI AGGCCT 1 cut(s) 1791
PciI ACATGT 2 cut(s) 1872, 1968
PctI GAATGC 2 cut(s) 1037, 1366
PfeI GAWTC 6 cut(s) 307, 875, 1004, 1724, 2156, 2351
PflMI CCANNNNNTGG 1 cut(s) 1166
PkrI GCNGC 1 cut(s) 1652
PleI GAGTC 4 cut(s) 392, 1142, 1474, 2334
PpsI GAGTC 4 cut(s) 392, 1142, 1474, 2334
PscI ACATGT 2 cut(s) 1872, 1968
PsiI TTATAA 2 cut(s) 1506, 2051
Psp6I CCWGG 3 cut(s) 138, 481, 1704
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 3 cut(s) 138, 481, 1704
PspN4I GGNNCC 1 cut(s) 1013
PspPI GGNCC 1 cut(s) 1496
PsuI RGATCY 1 cut(s) 1411
PvuII CAGCTG 2 cut(s) 149, 1357
RsaI GTAC 9 cut(s) 352, 390, 436, 916, 1033, 1287, 1688, 1877, 1957
RsaNI GTAC 9 cut(s) 351, 389, 435, 915, 1032, 1286, 1687, 1876, 1956
RseI CAYNNNNRTG 2 cut(s) 735, 910
SacII CCGCGG 1 cut(s) 1150
SaqAI TTAA 6 cut(s) 53, 417, 510, 966, 1820, 1841
SatI GCNGC 1 cut(s) 1651
Sau96I GGNCC 1 cut(s) 1496
ScaI AGTACT 1 cut(s) 390
SchI GAGTC 4 cut(s) 392, 1143, 1475, 2335
ScrFI CCNGG 4 cut(s) 140, 483, 1706, 1946
SduI GDGCHC 3 cut(s) 43, 1159, 1272
SfaNI GCATC 3 cut(s) 217, 337, 1637
Sfr303I CCGCGG 1 cut(s) 1150
SfuI TTCGAA 1 cut(s) 2079
SgrBI CCGCGG 1 cut(s) 1150
SmiMI CAYNNNNRTG 2 cut(s) 735, 910
SmlI CTYRAG 1 cut(s) 1785
SmoI CTYRAG 1 cut(s) 1785
SpeI ACTAGT 1 cut(s) 1519
SphI GCATGC 1 cut(s) 2171
SseBI AGGCCT 1 cut(s) 1791
SsiI CCGC 6 cut(s) 256, 384, 1147, 1149, 1463, 1567
SspMI CTAG 6 cut(s) 6, 818, 993, 1520, 1929, 2105
StuI AGGCCT 1 cut(s) 1791
StyD4I CCNGG 4 cut(s) 138, 481, 1704, 1944
StyI CCWWGG 3 cut(s) 366, 1570, 1986
TaaI ACNGT 6 cut(s) 123, 515, 1554, 1737, 1868, 2186
TaiI ACGT 1 cut(s) 2377
TaqI TCGA 3 cut(s) 2079, 2159, 2245
TatI WGTACW 4 cut(s) 350, 388, 1031, 1686
TfiI GAWTC 6 cut(s) 307, 875, 1004, 1724, 2156, 2351
Tru1I TTAA 6 cut(s) 53, 417, 510, 966, 1820, 1841
Tru9I TTAA 6 cut(s) 53, 417, 510, 966, 1820, 1841
TscAI CASTG 6 cut(s) 126, 957, 1548, 1608, 2169, 2191
TseFI GTSAC 3 cut(s) 1344, 1868, 1971
TseI GCWGC 1 cut(s) 1650
Tsp45I GTSAC 3 cut(s) 1344, 1868, 1971
TspDTI ATGAA 7 cut(s) 72, 503, 759, 1608, 1705, 1820, 2343
TspGWI ACGGA 2 cut(s) 110, 2159
TspRI CASTG 6 cut(s) 126, 957, 1548, 1608, 2169, 2191
Van91I CCANNNNNTGG 1 cut(s) 1166
XapI RAATTY 7 cut(s) 32, 210, 261, 406, 895, 1560, 1583
XceI RCATGY 4 cut(s) 1693, 1876, 1972, 2171
XcmI CCANNNNNNNNNTGG 1 cut(s) 1702
XmiI GTMKAC 2 cut(s) 1090, 1672
XspI CTAG 6 cut(s) 6, 818, 993, 1520, 1929, 2105
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.