RLG00000011513

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000509
Physical Location & Seq
Forward (+)
10088769 .. 10127795
39027 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011513

Sequence Viewer

Length: 999 bp
ATGGTCAAATCCTTGTTTCAGCTGGTGGAGTTTTTGAGCTGGGCTTGTTCAATGAAAGCTTTTCAGGCTATCACTATCTGGCCGGGAATTTGGTTGAGAGCCTATGCAACCAAGGTTGTCTGGGTTGATCGCGATAATCCTATATTGGATTCATCAGGCATGCTTCAAATCCTGTCTGGAAATTTGGTTCTTGCTGACCGTCGACAAGTACAATTGATAGTCAACTCAGGGAGTCTTGCCAGAGTCACAGCTAACACAAGTGCAACACTTCTTGACACCGGTAACTTTGTCCTTAAGGAAACAGATACAGACTCAACCAAACAGGTACTTTTGGATTGGAGAAGGCGTATTAACATTATTGAAGGTATTGCACAAGGTCTTCTATATCTTCACAAATACTCTAGATTAAGGATCATTCACCGCGATTTAAAGACCAGCAATATTCTGCTGGACAGTGACATGAACCCAAAAATTTCTGATTTTGGAATGGCAAGAATTTTCGGGGACAATGACATCAGAGGAAAAACAAACCGGGTACATTGTAATGGTTACATGTCTCCTGAGTATGCAATGAGCGGCCTCTTTTCTGAAAAATCCGATGTCTTTAGCTTTGGGGTGATCTTATTAGAGATCGTAAGTGGCTTGGATTTGTTGAAAAAAGGAAGCAGCATGGAGTTAATGGATCTGACACTGTGTGCTTCCTGTTCGAGCAGTGAAGTTATCAGATGCATACAGATGGGTCTTCTGTGCGTGCAAGAAAGAGCTATAGATCGACCAACCATGTCGGATGTTGTTTCTCTTCTAAGCAATCAATCATTTGCTCTGCCTCTTCCTAAAGGACCTGCATTTTTGAGTCAGTTAAGTTCGACTGATGCAGATTCATCTTCAAGTAGGCAAAGATACTACTCTCAAAATGACATAGCTATTTCAGAAGAACATGGCAAGCAGCATGTTAGAATTCACCAGGCTTTGCAATTAGCAATATTGCTGCCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.04

Weight (kDa)

7.63

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 39 - 104 1.7e-10 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 108 - 267 1.4e-25 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 108 - 228 1.2e-24 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 850
AccBSI CCGCTC 1 cut(s) 576
AccI GTMKAC 1 cut(s) 202
AccII CGCG 2 cut(s) 132, 423
AciI CCGC 2 cut(s) 421, 576
AclWI GGATC 2 cut(s) 419, 690
AcoI YGGCCR 1 cut(s) 80
AcsI RAATTY 5 cut(s) 87, 181, 471, 495, 957
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 3 cut(s) 210, 327, 537
AflII CTTAAG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 552
AgeI ACCGGT 1 cut(s) 278
AgsI TTSAA 5 cut(s) 51, 167, 362, 655, 888
AjnI CCWGG 1 cut(s) 963
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 7 cut(s) 22, 39, 59, 251, 609, 764, 923
AluI AGCT 7 cut(s) 22, 39, 59, 251, 609, 764, 923
Alw26I GTCTC 1 cut(s) 561
AlwI GGATC 2 cut(s) 419, 690
AoxI GGCC 2 cut(s) 80, 577
ApeKI GCWGC 3 cut(s) 666, 946, 988
ApoI RAATTY 5 cut(s) 87, 181, 471, 495, 957
AsiGI ACCGGT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 839
AsuC2I CCSGG 2 cut(s) 84, 533
AsuHPI GGTGA 3 cut(s) 410, 628, 953
AvaII GGWCC 1 cut(s) 839
BbsI GAAGAC 2 cut(s) 371, 734
BbvI GCAGC 3 cut(s) 678, 958, 975
BccI CCATC 1 cut(s) 730
BciT130I CCWGG 1 cut(s) 965
BcnI CCSGG 2 cut(s) 84, 533
BcoDI GTCTC 1 cut(s) 561
BfaI CTAG 1 cut(s) 402
BfmI CTRYAG 1 cut(s) 765
BfrI CTTAAG 1 cut(s) 293
BfuAI ACCTGC 1 cut(s) 850
BisI GCNGC 4 cut(s) 577, 667, 947, 989
BlsI GCNGC 4 cut(s) 578, 668, 948, 990
Bme1390I CCNGG 3 cut(s) 84, 533, 965
Bme18I GGWCC 1 cut(s) 839
BmgT120I GGNCC 1 cut(s) 839
BmrFI CCNGG 3 cut(s) 84, 533, 965
BmsI GCATC 2 cut(s) 716, 862
BpiI GAAGAC 2 cut(s) 371, 734
BpuMI CCSGG 2 cut(s) 84, 533
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 278
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bse118I RCCGGY 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 576
BseBI CCWGG 1 cut(s) 965
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 1 cut(s) 793
BseMI GCAATG 1 cut(s) 576
BseMII CTCAG 2 cut(s) 240, 552
BseXI GCAGC 3 cut(s) 678, 958, 975
BseYI CCCAGC 1 cut(s) 39
Bsh1236I CGCG 2 cut(s) 132, 423
BshFI GGCC 2 cut(s) 82, 579
BshTI ACCGGT 1 cut(s) 278
BsiSI CCGG 3 cut(s) 83, 279, 532
BslFI GGGAC 1 cut(s) 518
BsmAI GTCTC 1 cut(s) 561
BsmFI GGGAC 1 cut(s) 518
BsnI GGCC 2 cut(s) 82, 579
Bsp143I GATC 6 cut(s) 127, 411, 618, 630, 682, 769
Bsp68I TCGCGA 1 cut(s) 132
BspACI CCGC 2 cut(s) 421, 576
BspANI GGCC 2 cut(s) 82, 579
BspCNI CTCAG 2 cut(s) 239, 553
BspFNI CGCG 2 cut(s) 132, 423
BspMI ACCTGC 1 cut(s) 850
BspPI GGATC 2 cut(s) 419, 690
BspTI CTTAAG 1 cut(s) 293
BsrBI CCGCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 576
BsrFI RCCGGY 1 cut(s) 278
BssAI RCCGGY 1 cut(s) 278
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 6 cut(s) 127, 411, 618, 630, 682, 769
BssT1I CCWWGG 1 cut(s) 111
Bst2UI CCWGG 1 cut(s) 965
Bst4CI ACNGT 3 cut(s) 200, 455, 693
Bst6I CTCTTC 2 cut(s) 804, 834
BstAFI CTTAAG 1 cut(s) 293
BstC8I GCNNGC 3 cut(s) 161, 752, 944
BstDEI CTNAG 3 cut(s) 226, 561, 803
BstF5I GGATG 1 cut(s) 793
BstFNI CGCG 2 cut(s) 132, 423
BstKTI GATC 6 cut(s) 130, 414, 621, 633, 685, 772
BstMAI GTCTC 1 cut(s) 561
BstMBI GATC 6 cut(s) 127, 411, 618, 630, 682, 769
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 965
BstNSI RCATGY 3 cut(s) 163, 556, 953
BstSCI CCNGG 3 cut(s) 82, 531, 963
BstSFI CTRYAG 1 cut(s) 765
BstUI CGCG 2 cut(s) 132, 423
BstV1I GCAGC 3 cut(s) 678, 958, 975
BstV2I GAAGAC 2 cut(s) 371, 734
BstX2I RGATCY 1 cut(s) 682
BstYI RGATCY 1 cut(s) 682
BsuRI GGCC 2 cut(s) 82, 579
BtsCI GGATG 1 cut(s) 793
BtsI GCAGTG 1 cut(s) 718
BtsIMutI CAGTG 3 cut(s) 460, 689, 718
BtuMI TCGCGA 1 cut(s) 132
BveI ACCTGC 1 cut(s) 850
Cac8I GCNNGC 3 cut(s) 161, 752, 944
Cfr10I RCCGGY 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 839
Csp6I GTAC 3 cut(s) 209, 326, 536
CspAI ACCGGT 1 cut(s) 278
CviAII CATG 7 cut(s) 160, 460, 553, 670, 781, 938, 950
CviQI GTAC 3 cut(s) 209, 326, 536
DdeI CTNAG 3 cut(s) 226, 561, 803
DpnI GATC 6 cut(s) 129, 413, 620, 632, 684, 771
DpnII GATC 6 cut(s) 127, 411, 618, 630, 682, 769
DraI TTTAAA 1 cut(s) 429
DraIII CACNNNGTG 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 804, 834
EarI CTCTTC 2 cut(s) 804, 834
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 963
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 731
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 7 cut(s) 163, 463, 556, 673, 784, 941, 953
FaqI GGGAC 1 cut(s) 518
FatI CATG 7 cut(s) 159, 459, 552, 669, 780, 937, 949
FblI GTMKAC 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 577, 667, 947, 989
FokI GGATG 1 cut(s) 800
Fsp4HI GCNGC 4 cut(s) 577, 667, 947, 989
FspBI CTAG 1 cut(s) 402
GluI GCNGC 4 cut(s) 577, 667, 947, 989
GsaI CCCAGC 1 cut(s) 43
HaeIII GGCC 2 cut(s) 82, 579
HapII CCGG 3 cut(s) 83, 279, 532
Hin1II CATG 7 cut(s) 163, 463, 556, 673, 784, 941, 953
HincII GTYRAC 2 cut(s) 203, 223
HindII GTYRAC 2 cut(s) 203, 223
HindIII AAGCTT 1 cut(s) 57
HinfI GANTC 6 cut(s) 149, 232, 243, 311, 853, 878
HpaII CCGG 3 cut(s) 83, 279, 532
HphI GGTGA 3 cut(s) 410, 628, 953
Hpy166II GTNNAC 2 cut(s) 203, 223
Hpy188I TCNGA 8 cut(s) 478, 518, 589, 598, 687, 725, 787, 931
Hpy188III TCNNGA 5 cut(s) 131, 177, 272, 402, 560
Hpy8I GTNNAC 2 cut(s) 203, 223
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 2 cut(s) 336, 356
HpyCH4III ACNGT 3 cut(s) 200, 455, 693
HpyCH4V TGCA 9 cut(s) 107, 263, 371, 569, 729, 754, 845, 875, 973
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 3 cut(s) 226, 561, 803
Hsp92II CATG 7 cut(s) 163, 463, 556, 673, 784, 941, 953
Kzo9I GATC 6 cut(s) 127, 411, 618, 630, 682, 769
Lsp1109I GCAGC 3 cut(s) 678, 958, 975
LweI GCATC 2 cut(s) 716, 862
MaeI CTAG 1 cut(s) 402
MaeIII GTNAC 4 cut(s) 244, 281, 455, 548
MalI GATC 6 cut(s) 129, 413, 620, 632, 684, 771
MbiI CCGCTC 1 cut(s) 576
MboI GATC 6 cut(s) 127, 411, 618, 630, 682, 769
MboII GAAGA 7 cut(s) 371, 380, 734, 791, 821, 876, 944
MfeI CAATTG 1 cut(s) 212
MflI RGATCY 1 cut(s) 682
MluCI AATT 7 cut(s) 87, 181, 212, 471, 495, 957, 974
MlyI GAGTC 4 cut(s) 241, 252, 305, 862
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 3 cut(s) 512, 590, 837
Mph1103I ATGCAT 1 cut(s) 731
MseI TTAA 6 cut(s) 294, 351, 407, 428, 677, 860
MslI CAYNNNNRTG 2 cut(s) 543, 734
MspA1I CMGCKG 1 cut(s) 22
MspCI CTTAAG 1 cut(s) 293
MspI CCGG 3 cut(s) 83, 279, 532
MspR9I CCNGG 3 cut(s) 84, 533, 965
MunI CAATTG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 965
MvnI CGCG 2 cut(s) 132, 423
MwoI GCNNNNNNNGC 1 cut(s) 65
NciI CCSGG 2 cut(s) 84, 533
NdeII GATC 6 cut(s) 127, 411, 618, 630, 682, 769
NlaIII CATG 7 cut(s) 163, 463, 556, 673, 784, 941, 953
NmuCI GTSAC 2 cut(s) 244, 455
NruI TCGCGA 1 cut(s) 132
NsiI ATGCAT 1 cut(s) 731
NspI RCATGY 3 cut(s) 163, 556, 953
PaeI GCATGC 1 cut(s) 163
PciI ACATGT 1 cut(s) 552
PfeI GAWTC 2 cut(s) 149, 878
PinAI ACCGGT 1 cut(s) 278
PkrI GCNGC 4 cut(s) 578, 668, 948, 990
PleI GAGTC 4 cut(s) 240, 251, 305, 861
PpsI GAGTC 4 cut(s) 240, 251, 305, 861
PpuMI RGGWCCY 1 cut(s) 839
PscI ACATGT 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 1 cut(s) 963
PspFI CCCAGC 1 cut(s) 39
PspGI CCWGG 1 cut(s) 963
PspPI GGNCC 1 cut(s) 839
PspPPI RGGWCCY 1 cut(s) 839
PsuI RGATCY 1 cut(s) 682
PvuII CAGCTG 1 cut(s) 22
RruI TCGCGA 1 cut(s) 132
RsaI GTAC 3 cut(s) 210, 327, 537
RsaNI GTAC 3 cut(s) 209, 326, 536
RseI CAYNNNNRTG 2 cut(s) 543, 734
SalI GTCGAC 1 cut(s) 201
SaqAI TTAA 6 cut(s) 294, 351, 407, 428, 677, 860
SatI GCNGC 4 cut(s) 577, 667, 947, 989
Sau3AI GATC 6 cut(s) 127, 411, 618, 630, 682, 769
Sau96I GGNCC 1 cut(s) 839
SchI GAGTC 4 cut(s) 241, 252, 305, 862
ScrFI CCNGG 3 cut(s) 84, 533, 965
SfaNI GCATC 2 cut(s) 716, 862
SfcI CTRYAG 1 cut(s) 765
SinI GGWCC 1 cut(s) 839
SmiMI CAYNNNNRTG 2 cut(s) 543, 734
SmlI CTYRAG 1 cut(s) 293
SmoI CTYRAG 1 cut(s) 293
SphI GCATGC 1 cut(s) 163
Sse9I AATT 7 cut(s) 87, 181, 212, 471, 495, 957, 974
SsiI CCGC 2 cut(s) 421, 576
SspI AATATT 2 cut(s) 442, 984
SspMI CTAG 1 cut(s) 402
StyD4I CCNGG 3 cut(s) 82, 531, 963
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 3 cut(s) 200, 455, 693
TaqI TCGA 4 cut(s) 202, 707, 772, 866
TasI AATT 7 cut(s) 87, 181, 212, 471, 495, 957, 974
TatI WGTACW 1 cut(s) 208
TauI GCSGC 1 cut(s) 579
TfiI GAWTC 2 cut(s) 149, 878
Tru1I TTAA 6 cut(s) 294, 351, 407, 428, 677, 860
Tru9I TTAA 6 cut(s) 294, 351, 407, 428, 677, 860
TscAI CASTG 3 cut(s) 460, 696, 718
TseFI GTSAC 2 cut(s) 244, 455
TseI GCWGC 3 cut(s) 666, 946, 988
Tsp45I GTSAC 2 cut(s) 244, 455
TspDTI ATGAA 4 cut(s) 68, 141, 476, 870
TspRI CASTG 3 cut(s) 460, 696, 718
Vha464I CTTAAG 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 839
XapI RAATTY 5 cut(s) 87, 181, 471, 495, 957
XbaI TCTAGA 1 cut(s) 401
XceI RCATGY 3 cut(s) 163, 556, 953
XmiI GTMKAC 1 cut(s) 202
XspI CTAG 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.