FvH4_2g29560

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000509
Physical Location & Seq
Reverse (-)
22901839 .. 22906297
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29560.t1

Sequence Viewer

Length: 2418 bp
ATGGCTCTTCCTCTTATTATTTGCTCGATATTGTTCTCAAGCTTGTTTCCATTTCCATGCCATGCGATCACGGACACGCTCACAGCTTCAGACTCGTTGAGAGACAACCAAACTCTGGTTTCTGCCGGCGGAGTTTTCGTCCTCGGCTTCTTCATCGATAGCTCTTCAGGTAATCACTATTTAGGTATCTGGTTGAGAGCTGATTCAGAGAGAGTTGTTTGGGTTGCCTACCGTGAAATACCTATAGTGGATTCTTCCGGCGTGCTTCAAATCCGGTCAGGGAATCTGGTTATATCCGACCGGCGACAACTGCAGCTCATAGTTAACTCGGGAAACGTTGCCACCACCACCAACACGAGTGCAACACTTCTTGATACCGGAAACCTTGTGCTTAAGGATGAAGATACTGGTAACATTACATGGCAAAGTTTCGATGTACCAACTGATACATATCTTCCGGGGATGAAAATTGGGTTGTTTGGCCTAAACACAACAACACAACAAAGCTTTCAGATTCTCACTTCCTGGGCAAGCCCCCAAAACCCTAGTCGTGGCCTCTTCACCTTATCAGTGGACAGAATCGACTTCACTAAAATTGATGTCTGGCGAGGAGATGGACTCCAAATGCATATAGCTTTCTGGGACGGACATGATCTCCGGTTCATTTTCGAGAACACAACCGCAAACAATGAGTTCAACTTTATCTACAAGTCCATTAATGGAAGTGAAGCATACTACAGTTTTAGCCACAGCAAGAAGTATGACCTCATGTGGTTTGTAATGGCTTCAACAGGAAACCTGGACCAGTACTTCATGGTGAATGGGAAGATTAGTTCTATAAGTCATGCTCTGTGTGAAGATTCGAGTGGTGGTAACACTGGAAAATGCTTGACTTCTCTACCGCCTATGTGTGGTAATACGTTTAACGAGAAGAATGGTTCGTTGCCATCGACGGTTAAGGTGGAATCAATTGATATAGGCCCTAGTGATTGTGAGACGTTGTGCAAGAGCAATTGTTCTTGTAGTGCTTATGTTTCATTTCAGAGTGATCTACCGGTTTGTCATCTTTATTATGGGAGTCAACAGGAGTTGATGAAGATCATGGAGAAAGGGGGAGGAACTATTTACTTCCGTGGTTCTGCAAATACAAGTGGTGGTAAGAAGTGGAAAAGGTGGTTGACTGTCATGCTCCCGGTGGTGTTCCTCTCGGCTCTTATATCAATCTCCTTATTCTGCTATCTTCGTTGGAGAAGAGGACCTAAAGGAAGTAGGCGAGAAGGGATTGTCATTTCGGATGAAGTGAGATTGTTCCAGATTGGCTCCACTAATGCGTCACCAATTCAGTTTGATCCAGCTAGGGTTGCAAATATGATGGAGTTAAGCAGATCACAGAAGGATCAAGAACTTCCATTCTTTACTTTCTCTGCCTTACAAACTGCAACAGATGACTTTGCAAAGGCTAATAAACTCGGGGAAGGTGGATTCGGGCCTGTCTACAAGGGGAAGCTATTAGAAGGACAAGATATTGCAGTGAAAAGGTTGTCCGAGTTGTCAAGGCAAGGGTTGGAGGAGTTCAAAAACGAGGTCCTAGTCATTTGTAAGCTCCAACACAGGAACCTGGTTAGGATTTTGGGGTGCTGCATTGAAGGAGAAGAAAGTATACTAGTCTACGAGTACATGCCCAACAAAAGCTTAGATTCCTTCATTTTTGATTCTGTCAAACGGGCGCTTTTGGATTGGAAAAAGCGCATGAACATTATAGAAGGGATTGCTCAAGGTCTTCTATATCTTCACAAGTACTCCAGATTACGAATCATTCACCGCGATCTAAAGACAAGCAATATTCTGCTGGACAGTGACATGAACCCGAAAATTTCTGATTTTGGCATGGCAAGGATTTTCGCGGACAATGTCACTAGAGGAAAAACAAACCGGGTTGTTGGTACATTTGGTTACATGTCTCCGGAATATGCCATGGGCGGCCTATTTTCTGAAAAATCAGATGTGTTTAGCTTTGGGGTGATCGTATTAGAGATCATTAGTGGGAAGAAGAACATTCCATTTTTTGAGTCTGATCAAGCTAGTCTAAACTTACTCGCCAACGCCTGGAATTTATGGAATGAAGGCAAGAGCATGGAGTTGGTAGATTCAGCGTTGGTTGCATCATGTTCAAGCAGTGAAGTTATGAGGTGCATTCAGATGGGTCTTCTGTGCGTGCAAGAAAGAGCCATGGATCGACCAAACATGTCGGACGTGGCTTCGATGCTAAGCAATCAATCAATTCCTCTGCCTCTTCCTAAAGAACCTGCATTTTGGAGCCAGCTAAGTTCTACTGATGCAGATTCATCTTCAAGCAGGCAAAGACATTACTCTACAATTGACTCAACTCTAACTATTTCAGAAGTGCATGCAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

806

Amino Acids

89.62

Weight (kDa)

6.13

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 176 2e-26 D-mannose binding lectin
Pkinase PF00069 485 - 694 6.5e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 487 - 755 3.1e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2314
AccB7I CCANNNNNTGG 2 cut(s) 115, 2106
AccI GTMKAC 3 cut(s) 1494, 1660, 1668
AccII CGCG 2 cut(s) 1824, 1904
AccIII TCCGGA 1 cut(s) 1963
AciI CCGC 6 cut(s) 129, 681, 902, 1822, 1904, 1980
AclI AACGTT 1 cut(s) 336
AclWI GGATC 3 cut(s) 1343, 1404, 2241
AcsI RAATTY 2 cut(s) 1872, 2110
AcuI CTGAAG 2 cut(s) 72, 150
AfaI GTAC 5 cut(s) 438, 809, 1676, 1799, 1945
AfiI CCNNNNNNNGG 4 cut(s) 115, 551, 911, 2106
AflII CTTAAG 1 cut(s) 392
AflIII ACRYGT 2 cut(s) 1956, 2244
AgeI ACCGGT 1 cut(s) 1054
AgsI TTSAA 7 cut(s) 269, 697, 789, 1576, 1646, 2172, 2352
AhlI ACTAGT 1 cut(s) 1663
AjiI CACGTC 1 cut(s) 2254
AjnI CCWGG 4 cut(s) 524, 798, 1617, 2105
AloI GAACNNNNNNTCC 2 cut(s) 817, 849
Alw26I GTCTC 3 cut(s) 96, 989, 1965
AlwI GGATC 3 cut(s) 1343, 1404, 2241
Ama87I CYCGRG 2 cut(s) 328, 1469
Aor13HI TCCGGA 1 cut(s) 1963
AoxI GGCC 5 cut(s) 481, 553, 979, 1487, 1981
ApeKI GCWGC 2 cut(s) 313, 1638
ApoI RAATTY 2 cut(s) 1872, 2110
ArsI GACNNNNNNTTYG 4 cut(s) 532, 564, 1569, 1601
AseI ATTAAT 1 cut(s) 717
AsiGI ACCGGT 1 cut(s) 1054
AspLEI GCGC 2 cut(s) 1729, 1749
AspS9I GGNCC 5 cut(s) 802, 980, 1256, 1487, 1585
AsuC2I CCSGG 3 cut(s) 459, 1193, 1934
AsuHPI GGTGA 5 cut(s) 553, 829, 1326, 1811, 2032
AvaI CYCGRG 2 cut(s) 328, 1469
AvaII GGWCC 3 cut(s) 802, 1256, 1585
BarI GAAGNNNNNNTAC 2 cut(s) 1644, 1676
BauI CACGAG 1 cut(s) 355
BbsI GAAGAC 2 cut(s) 1772, 2198
BbvI GCAGC 2 cut(s) 325, 1625
BccI CCATC 4 cut(s) 608, 955, 1366, 2194
BciT130I CCWGG 4 cut(s) 526, 800, 1619, 2107
BclI TGATCA 1 cut(s) 2074
BcnI CCSGG 3 cut(s) 459, 1193, 1934
BcoDI GTCTC 3 cut(s) 96, 989, 1965
BcuI ACTAGT 1 cut(s) 1663
BfaI CTAG 7 cut(s) 546, 984, 1356, 1589, 1664, 1917, 2082
BfmI CTRYAG 3 cut(s) 243, 311, 736
BfoI RGCGCY 1 cut(s) 1730
BfrI CTTAAG 1 cut(s) 392
BfuAI ACCTGC 1 cut(s) 2314
BisI GCNGC 3 cut(s) 314, 1639, 1981
BlpI GCTNAGC 1 cut(s) 2267
BlsI GCNGC 3 cut(s) 315, 1640, 1982
BmcAI AGTACT 2 cut(s) 809, 1799
Bme1390I CCNGG 7 cut(s) 459, 526, 800, 1193, 1619, 1934, 2107
Bme18I GGWCC 3 cut(s) 802, 1256, 1585
BmeT110I CYCGRG 2 cut(s) 328, 1469
BmgBI CACGTC 1 cut(s) 2254
BmgT120I GGNCC 5 cut(s) 802, 980, 1256, 1487, 1585
BmiI GGNNCC 3 cut(s) 1321, 1616, 2318
BmrFI CCNGG 7 cut(s) 459, 526, 800, 1193, 1619, 1934, 2107
BmsI GCATC 3 cut(s) 2171, 2253, 2326
BpiI GAAGAC 2 cut(s) 1772, 2198
BplI GAGNNNNNCTC 2 cut(s) 603, 635
BpmI CTGGAG 1 cut(s) 1786
Bpu1102I GCTNAGC 1 cut(s) 2267
BpuEI CTTGAG 2 cut(s) 22, 1758
BpuMI CCSGG 3 cut(s) 459, 1193, 1934
Bsa29I ATCGAT 1 cut(s) 156
BsaBI GATNNNNATC 2 cut(s) 450, 1097
BsaJI CCNNGG 6 cut(s) 142, 458, 525, 1132, 1974, 2229
BsaWI WCCGGW 5 cut(s) 273, 377, 657, 1054, 1963
BsaXI ACNNNNNCTCC 6 cut(s) 123, 153, 639, 669, 1784, 1814
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 551, 911, 2106
Bse118I RCCGGY 3 cut(s) 125, 300, 1054
Bse1I ACTGG 3 cut(s) 412, 805, 883
Bse8I GATNNNNATC 2 cut(s) 450, 1097
BseAI TCCGGA 1 cut(s) 1963
BseBI CCWGG 4 cut(s) 526, 800, 1619, 2107
BseCI ATCGAT 1 cut(s) 156
BseDI CCNNGG 6 cut(s) 142, 458, 525, 1132, 1974, 2229
BseGI GGATG 3 cut(s) 403, 468, 1300
BseJI GATNNNNATC 2 cut(s) 450, 1097
BseLI CCNNNNNNNGG 4 cut(s) 115, 551, 911, 2106
BseNI ACTGG 3 cut(s) 412, 805, 883
BseRI GAGGAG 2 cut(s) 624, 1583
BseXI GCAGC 2 cut(s) 325, 1625
Bsh1236I CGCG 2 cut(s) 1824, 1904
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 5 cut(s) 483, 555, 981, 1489, 1983
BshTI ACCGGT 1 cut(s) 1054
BshVI ATCGAT 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 301
BsiHKCI CYCGRG 2 cut(s) 328, 1469
BslFI GGGAC 1 cut(s) 656
BslI CCNNNNNNNGG 4 cut(s) 115, 551, 911, 2106
BsmAI GTCTC 3 cut(s) 96, 989, 1965
BsmBI CGTCTC 1 cut(s) 989
BsmFI GGGAC 1 cut(s) 656
BsmI GAATGC 1 cut(s) 2193
BsnI GGCC 5 cut(s) 483, 555, 981, 1489, 1983
BsoBI CYCGRG 2 cut(s) 328, 1469
Bsp13I TCCGGA 1 cut(s) 1963
Bsp1720I GCTNAGC 1 cut(s) 2267
Bsp19I CCATGG 2 cut(s) 1974, 2229
BspACI CCGC 6 cut(s) 129, 681, 902, 1822, 1904, 1980
BspANI GGCC 5 cut(s) 483, 555, 981, 1489, 1983
BspDI ATCGAT 1 cut(s) 156
BspEI TCCGGA 1 cut(s) 1963
BspFNI CGCG 2 cut(s) 1824, 1904
BspLI GGNNCC 3 cut(s) 1321, 1616, 2318
BspMAI CTGCAG 1 cut(s) 315
BspMI ACCTGC 1 cut(s) 2314
BspPI GGATC 3 cut(s) 1343, 1404, 2241
BspQI GCTCTTC 2 cut(s) 12, 169
BspTI CTTAAG 1 cut(s) 392
BsrFI RCCGGY 3 cut(s) 125, 300, 1054
BsrI ACTGG 3 cut(s) 412, 805, 883
BssAI RCCGGY 3 cut(s) 125, 300, 1054
BssECI CCNNGG 6 cut(s) 142, 458, 525, 1132, 1974, 2229
BssNAI GTATAC 1 cut(s) 1661
BssSI CACGAG 1 cut(s) 355
BssT1I CCWWGG 2 cut(s) 1974, 2229
Bst1107I GTATAC 1 cut(s) 1661
Bst2BI CACGAG 1 cut(s) 355
Bst2UI CCWGG 4 cut(s) 526, 800, 1619, 2107
Bst4CI ACNGT 5 cut(s) 233, 740, 955, 1183, 1856
Bst6I CTCTTC 5 cut(s) 12, 169, 563, 1246, 2298
BstAFI CTTAAG 1 cut(s) 392
BstC8I GCNNGC 7 cut(s) 127, 263, 532, 2216, 2321, 2357, 2409
BstDEI CTNAG 3 cut(s) 1693, 2267, 2324
BstDSI CCRYGG 3 cut(s) 1132, 1974, 2229
BstF5I GGATG 3 cut(s) 403, 468, 1300
BstFNI CGCG 2 cut(s) 1824, 1904
BstH2I RGCGCY 1 cut(s) 1730
BstHHI GCGC 2 cut(s) 1729, 1749
BstMAI GTCTC 3 cut(s) 96, 989, 1965
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 3 cut(s) 310, 1361, 2159
BstNI CCWGG 4 cut(s) 526, 800, 1619, 2107
BstNSI RCATGY 4 cut(s) 1681, 1960, 2248, 2411
BstSCI CCNGG 7 cut(s) 457, 524, 798, 1191, 1617, 1932, 2105
BstSFI CTRYAG 3 cut(s) 243, 311, 736
BstUI CGCG 2 cut(s) 1824, 1904
BstV1I GCAGC 2 cut(s) 325, 1625
BstV2I GAAGAC 2 cut(s) 1772, 2198
BstZ17I GTATAC 1 cut(s) 1661
Bsu15I ATCGAT 1 cut(s) 156
BsuRI GGCC 5 cut(s) 483, 555, 981, 1489, 1983
BsuTUI ATCGAT 1 cut(s) 156
BtgI CCRYGG 3 cut(s) 1132, 1974, 2229
BtrI CACGTC 1 cut(s) 2254
BtsCI GGATG 3 cut(s) 403, 468, 1300
BtsI GCAGTG 2 cut(s) 1536, 2182
BtsIMutI CAGTG 5 cut(s) 576, 876, 1536, 1861, 2182
BveI ACCTGC 1 cut(s) 2314
Cac8I GCNNGC 7 cut(s) 127, 263, 532, 2216, 2321, 2357, 2409
CfoI GCGC 2 cut(s) 1729, 1749
Cfr10I RCCGGY 3 cut(s) 125, 300, 1054
Cfr13I GGNCC 5 cut(s) 802, 980, 1256, 1487, 1585
ClaI ATCGAT 1 cut(s) 156
CseI GACGC 1 cut(s) 1320
CsiI ACCWGGT 1 cut(s) 1617
Csp6I GTAC 5 cut(s) 437, 808, 1675, 1798, 1944
CspAI ACCGGT 1 cut(s) 1054
CviQI GTAC 5 cut(s) 437, 808, 1675, 1798, 1944
DdeI CTNAG 3 cut(s) 1693, 2267, 2324
Eam1104I CTCTTC 5 cut(s) 12, 169, 563, 1246, 2298
EarI CTCTTC 5 cut(s) 12, 169, 563, 1246, 2298
EciI GGCGGA 1 cut(s) 144
Eco130I CCWWGG 2 cut(s) 1974, 2229
Eco47I GGWCC 3 cut(s) 802, 1256, 1585
Eco57I CTGAAG 2 cut(s) 72, 150
Eco88I CYCGRG 2 cut(s) 328, 1469
EcoO109I RGGNCCY 3 cut(s) 980, 1256, 1585
EcoRII CCWGG 4 cut(s) 524, 798, 1617, 2105
EcoT14I CCWWGG 2 cut(s) 1974, 2229
EcoT22I ATGCAT 1 cut(s) 630
ErhI CCWWGG 2 cut(s) 1974, 2229
Esp3I CGTCTC 1 cut(s) 989
FaqI GGGAC 1 cut(s) 656
FbaI TGATCA 1 cut(s) 2074
FblI GTMKAC 3 cut(s) 1494, 1660, 1668
Fnu4HI GCNGC 3 cut(s) 314, 1639, 1981
FokI GGATG 3 cut(s) 410, 475, 1307
Fsp4HI GCNGC 3 cut(s) 314, 1639, 1981
FspBI CTAG 7 cut(s) 546, 984, 1356, 1589, 1664, 1917, 2082
GlaI GCGC 2 cut(s) 1728, 1748
GluI GCNGC 3 cut(s) 314, 1639, 1981
GsuI CTGGAG 1 cut(s) 1786
HaeII RGCGCY 1 cut(s) 1730
HaeIII GGCC 5 cut(s) 483, 555, 981, 1489, 1983
HgaI GACGC 1 cut(s) 1320
HhaI GCGC 2 cut(s) 1729, 1749
Hin6I GCGC 2 cut(s) 1727, 1747
HinP1I GCGC 2 cut(s) 1727, 1747
HincII GTYRAC 3 cut(s) 325, 1082, 1179
HindII GTYRAC 3 cut(s) 325, 1082, 1179
HindIII AAGCTT 3 cut(s) 40, 505, 1690
HpaI GTTAAC 1 cut(s) 325
HphI GGTGA 5 cut(s) 553, 829, 1326, 1811, 2032
Hpy166II GTNNAC 7 cut(s) 325, 574, 1082, 1179, 1495, 1661, 1669
Hpy188III TCNNGA 7 cut(s) 330, 371, 670, 1312, 1400, 1803, 1964
Hpy8I GTNNAC 7 cut(s) 325, 574, 1082, 1179, 1495, 1661, 1669
Hpy99I CGWCG 1 cut(s) 955
HpyAV CCTTC 8 cut(s) 1271, 1387, 1469, 1508, 1640, 1711, 1757, 2117
HpyCH4III ACNGT 5 cut(s) 233, 740, 955, 1183, 1856
HpyCH4IV ACGT 4 cut(s) 336, 920, 998, 2253
HpyF10VI GCNNNNNNNGC 3 cut(s) 310, 1361, 2159
HpyF3I CTNAG 3 cut(s) 1693, 2267, 2324
HpySE526I ACGT 4 cut(s) 336, 920, 998, 2253
HspAI GCGC 2 cut(s) 1727, 1747
Kpn2I TCCGGA 1 cut(s) 1963
KroI GCCGGC 1 cut(s) 125
KroNI GCCGGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 2074
KspAI GTTAAC 1 cut(s) 325
LguI GCTCTTC 2 cut(s) 12, 169
LmnI GCTCC 4 cut(s) 1194, 1325, 1608, 2316
Lsp1109I GCAGC 2 cut(s) 325, 1625
LweI GCATC 3 cut(s) 2171, 2253, 2326
MabI ACCWGGT 1 cut(s) 1617
MaeI CTAG 7 cut(s) 546, 984, 1356, 1589, 1664, 1917, 2082
MaeII ACGT 4 cut(s) 336, 920, 998, 2253
MaeIII GTNAC 6 cut(s) 410, 872, 1332, 1856, 1912, 1952
MfeI CAATTG 3 cut(s) 969, 1012, 2376
MluCI AATT 9 cut(s) 468, 594, 969, 1012, 1338, 1872, 2110, 2280, 2376
MlyI GAGTC 5 cut(s) 86, 612, 1087, 2078, 2375
MmeI TCCRAC 5 cut(s) 321, 1226, 1545, 1630, 2229
Mph1103I ATGCAT 1 cut(s) 630
MroI TCCGGA 1 cut(s) 1963
MroNI GCCGGC 1 cut(s) 125
MseI TTAA 6 cut(s) 324, 393, 717, 924, 957, 1379
MslI CAYNNNNRTG 2 cut(s) 55, 2198
MspCI CTTAAG 1 cut(s) 392
MspR9I CCNGG 7 cut(s) 459, 526, 800, 1193, 1619, 1934, 2107
MunI CAATTG 3 cut(s) 969, 1012, 2376
Mva1269I GAATGC 1 cut(s) 2193
MvaI CCWGG 4 cut(s) 526, 800, 1619, 2107
MvnI CGCG 2 cut(s) 1824, 1904
MwoI GCNNNNNNNGC 3 cut(s) 310, 1361, 2159
NaeI GCCGGC 1 cut(s) 127
NciI CCSGG 3 cut(s) 459, 1193, 1934
NcoI CCATGG 2 cut(s) 1974, 2229
NgoMIV GCCGGC 1 cut(s) 125
NlaIV GGNNCC 3 cut(s) 1321, 1616, 2318
NmeAIII GCCGAG 2 cut(s) 123, 1187
NmuCI GTSAC 3 cut(s) 1332, 1856, 1912
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 4 cut(s) 1681, 1960, 2248, 2411
PaeI GCATGC 1 cut(s) 2411
PciI ACATGT 2 cut(s) 1956, 2244
PciSI GCTCTTC 2 cut(s) 12, 169
PcsI WCGNNNNNNNCGW 1 cut(s) 947
PctI GAATGC 1 cut(s) 2193
PdiI GCCGGC 1 cut(s) 127
PflFI GACNNNGTC 1 cut(s) 1910
PflMI CCANNNNNTGG 2 cut(s) 115, 2106
PinAI ACCGGT 1 cut(s) 1054
PkrI GCNGC 3 cut(s) 315, 1640, 1982
PleI GAGTC 5 cut(s) 86, 612, 1086, 2077, 2375
PpsI GAGTC 5 cut(s) 86, 612, 1086, 2077, 2375
PpuMI RGGWCCY 2 cut(s) 1256, 1585
PscI ACATGT 2 cut(s) 1956, 2244
PshBI ATTAAT 1 cut(s) 717
Psp1406I AACGTT 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 1256, 1585
Psp6I CCWGG 4 cut(s) 524, 798, 1617, 2105
PspGI CCWGG 4 cut(s) 524, 798, 1617, 2105
PspN4I GGNNCC 3 cut(s) 1321, 1616, 2318
PspPI GGNCC 5 cut(s) 802, 980, 1256, 1487, 1585
PspPPI RGGWCCY 2 cut(s) 1256, 1585
PstI CTGCAG 1 cut(s) 315
PsyI GACNNNGTC 1 cut(s) 1910
RsaI GTAC 5 cut(s) 438, 809, 1676, 1799, 1945
RsaNI GTAC 5 cut(s) 437, 808, 1675, 1798, 1944
RseI CAYNNNNRTG 2 cut(s) 55, 2198
SapI GCTCTTC 2 cut(s) 12, 169
SaqAI TTAA 6 cut(s) 324, 393, 717, 924, 957, 1379
SatI GCNGC 3 cut(s) 314, 1639, 1981
Sau96I GGNCC 5 cut(s) 802, 980, 1256, 1487, 1585
ScaI AGTACT 2 cut(s) 809, 1799
SchI GAGTC 5 cut(s) 86, 612, 1087, 2078, 2375
ScrFI CCNGG 7 cut(s) 459, 526, 800, 1193, 1619, 1934, 2107
SexAI ACCWGGT 1 cut(s) 1617
SfaNI GCATC 3 cut(s) 2171, 2253, 2326
SfcI CTRYAG 3 cut(s) 243, 311, 736
SinI GGWCC 3 cut(s) 802, 1256, 1585
SmiMI CAYNNNNRTG 2 cut(s) 55, 2198
SmlI CTYRAG 3 cut(s) 37, 392, 1773
SmoI CTYRAG 3 cut(s) 37, 392, 1773
SpeI ACTAGT 1 cut(s) 1663
SphI GCATGC 1 cut(s) 2411
Sse9I AATT 9 cut(s) 468, 594, 969, 1012, 1338, 1872, 2110, 2280, 2376
SsiI CCGC 6 cut(s) 129, 681, 902, 1822, 1904, 1980
SspI AATATT 1 cut(s) 1843
SspMI CTAG 7 cut(s) 546, 984, 1356, 1589, 1664, 1917, 2082
StyD4I CCNGG 7 cut(s) 457, 524, 798, 1191, 1617, 1932, 2105
StyI CCWWGG 2 cut(s) 1974, 2229
TaaI ACNGT 5 cut(s) 233, 740, 955, 1183, 1856
TaiI ACGT 4 cut(s) 339, 923, 1001, 2256
TaqI TCGA 9 cut(s) 26, 156, 432, 582, 669, 863, 950, 2236, 2261
TasI AATT 9 cut(s) 468, 594, 969, 1012, 1338, 1872, 2110, 2280, 2376
TatI WGTACW 3 cut(s) 807, 1674, 1797
TauI GCSGC 1 cut(s) 1983
Tru1I TTAA 6 cut(s) 324, 393, 717, 924, 957, 1379
Tru9I TTAA 6 cut(s) 324, 393, 717, 924, 957, 1379
TscAI CASTG 5 cut(s) 576, 883, 1536, 1861, 2182
TseFI GTSAC 3 cut(s) 1332, 1856, 1912
TseI GCWGC 2 cut(s) 313, 1638
Tsp45I GTSAC 3 cut(s) 1332, 1856, 1912
TspGWI ACGGA 3 cut(s) 86, 660, 1121
TspRI CASTG 5 cut(s) 576, 883, 1536, 1861, 2182
Tth111I GACNNNGTC 1 cut(s) 1910
Van91I CCANNNNNTGG 2 cut(s) 115, 2106
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 3 cut(s) 802, 1256, 1585
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 2 cut(s) 1872, 2110
XceI RCATGY 4 cut(s) 1681, 1960, 2248, 2411
XmiI GTMKAC 3 cut(s) 1494, 1660, 1668
XspI CTAG 7 cut(s) 546, 984, 1356, 1589, 1664, 1917, 2082
ZrmI AGTACT 2 cut(s) 809, 1799
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.