Rroxscaffold_7G00169610

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000509
Physical Location & Seq
Forward (+)
10198211 .. 10199102
892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169610.1

Sequence Viewer

Length: 576 bp
ATGGCCAGCATCAAAGGAGAATTTCTTCATATTGTTTGTTTGATATCATCCTATACCTTCTTTTCATTTTCATCTCATGCATTAACTGATACACTTACACCTGAAGAAACACTAACAAATAATCAAACCTTGGTTTCAGCTGGTAGGATTTTTGAGCTTGGCTTCTTCAATGATGACTTTTCAGGCAATTATTATATTGGTATTTGGTTCAAAGCAGATAAGAACAAGGTTGTCTGGGTTGGTAACTTCGAAATTCCCATATCAGATTCCTCAGGTATTCTTCAAATACGATCTGGGAATCTGGTTTCCATGGACAGACGTCAAGTTCCTTGGCTACTCAATTCTGGAAATGTTGCCACAGCCATAAACACAACTGCAACACTTCTTGATTCAGGAAATTTTGTCCTTAAAGAAGAATATACAGGTACTGTTCTATGGAAAAGTTTTGATAATCCAACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTTTGGCGAGGAGATAAAGTTCAAATGGATATTGGGTTTTGGGATGGACATTGTCAGCATTCATAAAGTTATCCCAACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

191

Amino Acids

21.37

Weight (kDa)

5.12

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 164 4.7e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 20, 252, 397
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 427
AgsI TTSAA 4 cut(s) 169, 211, 284, 514
AjnI CCWGG 1 cut(s) 472
AloI GAACNNNNNNTCC 2 cut(s) 494, 526
AluBI AGCT 2 cut(s) 140, 157
AluI AGCT 2 cut(s) 140, 157
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 3 cut(s) 20, 252, 397
Asp700I GAANNNNTTC 1 cut(s) 24
AsuII TTCGAA 1 cut(s) 249
AxyI CCTNAGG 1 cut(s) 271
BalI TGGCCA 1 cut(s) 5
BccI CCATC 1 cut(s) 529
BciT130I CCWGG 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 249
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 129, 309, 329, 473
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bse21I CCTNAGG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 4 cut(s) 129, 309, 329, 473
BseGI GGATG 3 cut(s) 47, 483, 540
BseJI GATNNNNATC 1 cut(s) 465
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 515
BshFI GGCC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 249
Bsp143I GATC 1 cut(s) 290
Bsp19I CCATGG 1 cut(s) 309
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 284
BspT104I TTCGAA 1 cut(s) 249
BssECI CCNNGG 4 cut(s) 129, 309, 329, 473
BssMI GATC 1 cut(s) 290
BssNI GRCGYC 1 cut(s) 319
BssT1I CCWWGG 3 cut(s) 129, 309, 329
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 3 cut(s) 47, 483, 540
BstKTI GATC 1 cut(s) 293
BstMBI GATC 1 cut(s) 290
BstNI CCWGG 1 cut(s) 474
BstPAI GACNNNNGTC 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 472
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 3 cut(s) 47, 483, 540
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 428
Csp6I GTAC 1 cut(s) 426
CviAII CATG 2 cut(s) 77, 310
CviJI RGCY 6 cut(s) 5, 140, 157, 162, 334, 362
CviKI_1 RGCY 6 cut(s) 5, 140, 157, 162, 334, 362
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 271
DpnI GATC 1 cut(s) 292
DpnII GATC 1 cut(s) 290
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 129, 309, 329
Eco32I GATATC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 3 cut(s) 129, 309, 329
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 3 cut(s) 129, 309, 329
FaeI CATG 2 cut(s) 80, 313
FatI CATG 2 cut(s) 76, 309
FokI GGATG 3 cut(s) 34, 490, 547
HaeIII GGCC 1 cut(s) 5
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 2 cut(s) 80, 313
HinfI GANTC 3 cut(s) 266, 298, 389
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 345, 386, 393
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 430
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 3 cut(s) 80, 377, 572
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 2 cut(s) 80, 313
Kzo9I GATC 1 cut(s) 290
LweI GCATC 1 cut(s) 18
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 1 cut(s) 242
MalI GATC 1 cut(s) 292
MboI GATC 1 cut(s) 290
MboII GAAGA 6 cut(s) 17, 116, 157, 272, 425, 461
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 20, 187, 252, 340, 397
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 2 cut(s) 280, 493
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 83, 408
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 474
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 474
NcoI CCATGG 1 cut(s) 309
NdeII GATC 1 cut(s) 290
NlaIII CATG 2 cut(s) 80, 313
NsiI ATGCAT 1 cut(s) 82
NspV TTCGAA 1 cut(s) 249
PctI GAATGC 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 3 cut(s) 266, 298, 389
PflFI GACNNNGTC 1 cut(s) 542
PshAI GACNNNNGTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 472
PspGI CCWGG 1 cut(s) 472
PstNI CAGNNNCTG 1 cut(s) 428
PsyI GACNNNGTC 1 cut(s) 542
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 83, 408
Sau3AI GATC 1 cut(s) 290
ScrFI CCNGG 1 cut(s) 474
SetI ASST 9 cut(s) 59, 103, 131, 142, 159, 231, 277, 322, 427
SfaNI GCATC 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 249
Sse9I AATT 5 cut(s) 20, 187, 252, 340, 397
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 3 cut(s) 129, 309, 329
TaaI ACNGT 1 cut(s) 430
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 249
TasI AATT 5 cut(s) 20, 187, 252, 340, 397
TfiI GAWTC 3 cut(s) 266, 298, 389
Tru1I TTAA 2 cut(s) 83, 408
Tru9I TTAA 2 cut(s) 83, 408
TspDTI ATGAA 5 cut(s) 17, 54, 60, 494, 542
Tth111I GACNNNGTC 1 cut(s) 542
XapI RAATTY 3 cut(s) 20, 252, 397
XmnI GAANNNNTTC 1 cut(s) 24
ZraI GACGTC 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.