Rh6AG391800

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000509
Physical Location & Seq
Reverse (-)
59015414 .. 59038509
23096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG391800.1

Sequence Viewer

Length: 1383 bp
ATGGCCATGTCTCTTCCTCTAATTTGCTTGATATCATCATTCTTTAGCTTCTTTTCGTTTTCATCTCTTGCAACAGATATTCTTACACCTTCAGACACATTGAGAGATGGTCAAATCCTGGTTTCAGCTGGTGGAGTTTTTGAGCTTGGCTTCTTCGCTGAAAGCTTTTCAGGCTATCACTATCTGGGAATTTGGTTGAGAGCCGATGCAAGCAAGGTTGTCTGGGTTGATCGCGATACTCCCATAATGGATTCATCAGGCATGCTTCAAATCCTGTCTGGGAATTTGGTTCTCACAGACCGTCGACAAGTGCAATTGATAGTCAACACAGGAAGTCTTGCCACGGCCTCAACTGCTAATACAAGTGCAACACTTCTTGATACTGGAAATTTTGTCCTCAAGGAAGCAGATACAGGTAATACTATATGGCAAAGTTTTGATATACCGACTGATACTTATCTTCCTGGGATGAAACTTGGGCTGTTTGGCCGAAACATATTTCACAGTATTGTTTCTTGGGCAAGCCCTCAAAACCCAGCTCGTGGCATCTTCACCTTAAGCATCAATAGCAACGACACCAGAAAGCTTTCAGTTCAGCGAGGAAATAATGGAGAGAAAATAGGTATCAGTTTCTGGGATGGAAATGGCATCCGGTTTATATTTGAAAATTCAACTGCCACTATGTACAATTTTAGCTTCCAGTCCAATGCAACCGAAGCATTCTACACTTTTACTACCAGTAAGAATTATGACCTTGTGTGGTTTGTGATGAATTACACTGGAAACCTGGACCAATATTTTATGGTGGATGGGAAGATCTCGTATGTGAGTCATGCTTTGTGTGAGGAGTCAGCCGGTGGTAGTACTCGGACGTGTTTTAGTACAATACCTTCTAACTGTGAAGATGGTGCCGAATTTTCTCAGATTAATGGTTTGCTGCCAGATACATCTAATACCACAGGTTCCCTAAATATGGTGATTACTGATTGTGAAACTTTCTGCAAGAACAATTGTTCTTGTACCGCATTCGCTTCAGTTCAGAATGGTCAACCAGGATGTCAACTTTACTATGGGAGTAAACAGGATTTATTGAAGAACATAGAGAAGGGGGCAGGGCTTATTTACATCCGGGGTGGTGCTCCAAGTGATGCTAAGAAGTGGAAACTCAGGTTGGCTGTGGCGATTCCTGTAGCTTCTCTCTTGGTTCTTATTCCAATCTTCTTCACCTGCTACCTGTGCTGGAGAAAGCGACTGAAAGATACTCTTACACCTTCAGACACATTGAGAGATGGTCAAATCCTGGTTTCAGCTGGTGGAGTTTTTGAGCTGGGCTTGTTCAATGAAAGCTTTTCAGGCTATCACTATCTGGGAATTTGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

460

Amino Acids

50.4

Weight (kDa)

5.22

Isoelectric Point (pI)

27.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 73 - 173 7.3e-24 D-mannose binding lectin
PAN_2 PF08276 300 - 356 3e-07 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1235
Acc36I ACCTGC 1 cut(s) 1235
AccB1I GGYRCC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 542
AccI GTMKAC 1 cut(s) 304
AccII CGCG 1 cut(s) 234
AciI CCGC 1 cut(s) 1023
AcoI YGGCCR 2 cut(s) 3, 487
AcsI RAATTY 6 cut(s) 189, 283, 388, 667, 914, 1371
AcuI CTGAAG 3 cut(s) 75, 1017, 1257
AfaI GTAC 4 cut(s) 686, 865, 883, 1021
AfiI CCNNNNNNNGG 2 cut(s) 542, 973
AflII CTTAAG 1 cut(s) 556
AflIII ACRYGT 1 cut(s) 872
AgsI TTSAA 5 cut(s) 269, 665, 672, 1093, 1339
AjiI CACGTC 1 cut(s) 873
AjnI CCWGG 5 cut(s) 117, 463, 786, 1051, 1299
AjuI GAANNNNNNNTTGG 2 cut(s) 1154, 1186
Alw21I GWGCWC 1 cut(s) 1141
Alw26I GTCTC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 633
AoxI GGCC 3 cut(s) 3, 345, 487
ApeKI GCWGC 1 cut(s) 937
ApoI RAATTY 6 cut(s) 189, 283, 388, 667, 914, 1371
AseI ATTAAT 1 cut(s) 927
Asp700I GAANNNNTTC 1 cut(s) 586
AspS9I GGNCC 1 cut(s) 790
AsuC2I CCSGG 1 cut(s) 1130
AsuHPI GGTGA 3 cut(s) 544, 988, 1216
AvaII GGWCC 1 cut(s) 790
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 908
BarI GAAGNNNNNNTAC 2 cut(s) 874, 906
BauI CACGAG 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 1141
BbvI GCAGC 1 cut(s) 924
BccI CCATC 5 cut(s) 101, 632, 803, 899, 1283
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 5 cut(s) 119, 465, 788, 1053, 1301
BcnI CCSGG 1 cut(s) 1130
BcoDI GTCTC 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 1188
BfrI CTTAAG 1 cut(s) 556
BfuAI ACCTGC 1 cut(s) 1235
BglII AGATCT 1 cut(s) 816
BisI GCNGC 1 cut(s) 938
BlsI GCNGC 1 cut(s) 939
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 6 cut(s) 119, 465, 788, 1053, 1130, 1301
Bme18I GGWCC 1 cut(s) 790
BmgBI CACGTC 1 cut(s) 873
BmgT120I GGNCC 1 cut(s) 790
BmiI GGNNCC 2 cut(s) 910, 964
BmrFI CCNGG 6 cut(s) 119, 465, 788, 1053, 1130, 1301
BmsI GCATC 5 cut(s) 196, 555, 570, 657, 1138
BpmI CTGGAG 1 cut(s) 1261
BpuEI CTTGAG 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 1130
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 342, 464, 1129
BsaWI WCCGGW 1 cut(s) 651
Bsc4I CCNNNNNNNGG 2 cut(s) 542, 973
Bse118I RCCGGY 1 cut(s) 854
Bse1I ACTGG 4 cut(s) 388, 700, 738, 784
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 5 cut(s) 119, 465, 788, 1053, 1301
BseDI CCNNGG 3 cut(s) 342, 464, 1129
BseGI GGATG 6 cut(s) 474, 643, 648, 814, 1061, 1125
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 2 cut(s) 542, 973
BseMII CTCAG 2 cut(s) 935, 1180
BseNI ACTGG 4 cut(s) 388, 700, 738, 784
BseRI GAGGAG 1 cut(s) 860
BseXI GCAGC 1 cut(s) 924
BseYI CCCAGC 2 cut(s) 535, 1327
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 5, 347, 489
BshNI GGYRCC 1 cut(s) 908
BsiHKAI GWGCWC 1 cut(s) 1141
BsiSI CCGG 3 cut(s) 652, 855, 1129
BslI CCNNNNNNNGG 2 cut(s) 542, 973
BsmAI GTCTC 1 cut(s) 15
BsmI GAATGC 2 cut(s) 719, 1025
BsnI GGCC 3 cut(s) 5, 347, 489
Bsp1286I GDGCHC 1 cut(s) 1141
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 2 cut(s) 229, 816
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 1 cut(s) 1023
BspANI GGCC 3 cut(s) 5, 347, 489
BspCNI CTCAG 2 cut(s) 934, 1179
BspFNI CGCG 1 cut(s) 234
BspLI GGNNCC 2 cut(s) 910, 964
BspMI ACCTGC 1 cut(s) 1235
BspT107I GGYRCC 1 cut(s) 908
BspTI CTTAAG 1 cut(s) 556
BsrFI RCCGGY 1 cut(s) 854
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 4 cut(s) 388, 700, 738, 784
BssAI RCCGGY 1 cut(s) 854
BssECI CCNNGG 3 cut(s) 342, 464, 1129
BssMI GATC 2 cut(s) 229, 816
BssSI CACGAG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 540
Bst2UI CCWGG 5 cut(s) 119, 465, 788, 1053, 1301
Bst4CI ACNGT 3 cut(s) 302, 506, 899
Bst6I CTCTTC 1 cut(s) 18
BstAFI CTTAAG 1 cut(s) 556
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 3 cut(s) 211, 263, 523
BstDEI CTNAG 3 cut(s) 921, 1152, 1166
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 6 cut(s) 474, 643, 648, 814, 1061, 1125
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 2 cut(s) 232, 819
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 229, 816
BstMWI GCNNNNNNNGC 6 cut(s) 171, 353, 567, 716, 1236, 1353
BstNI CCWGG 5 cut(s) 119, 465, 788, 1053, 1301
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 6 cut(s) 117, 463, 786, 1051, 1128, 1299
BstSFI CTRYAG 1 cut(s) 1188
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 924
BstX2I RGATCY 1 cut(s) 816
BstYI RGATCY 1 cut(s) 816
BsuRI GGCC 3 cut(s) 5, 347, 489
BtgI CCRYGG 1 cut(s) 342
BtrI CACGTC 1 cut(s) 873
BtsCI GGATG 6 cut(s) 474, 643, 648, 814, 1061, 1125
BtsIMutI CAGTG 1 cut(s) 777
BtuMI TCGCGA 1 cut(s) 234
BveI ACCTGC 1 cut(s) 1235
Cac8I GCNNGC 3 cut(s) 211, 263, 523
CaiI CAGNNNCTG 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 854
Cfr13I GGNCC 1 cut(s) 790
Csp6I GTAC 4 cut(s) 685, 864, 882, 1020
CviAII CATG 3 cut(s) 7, 262, 833
CviQI GTAC 4 cut(s) 685, 864, 882, 1020
DdeI CTNAG 3 cut(s) 921, 1152, 1166
DpnI GATC 2 cut(s) 231, 818
DpnII GATC 2 cut(s) 229, 816
EaeI YGGCCR 2 cut(s) 3, 487
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 790
Eco57I CTGAAG 3 cut(s) 75, 1017, 1257
EcoRII CCWGG 5 cut(s) 117, 463, 786, 1051, 1299
EcoRV GATATC 1 cut(s) 33
FaeI CATG 3 cut(s) 10, 265, 836
FalI AAGNNNNNCTT 2 cut(s) 1248, 1280
FatI CATG 3 cut(s) 6, 261, 832
FblI GTMKAC 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 938
FokI GGATG 6 cut(s) 481, 635, 650, 821, 1068, 1112
Fsp4HI GCNGC 1 cut(s) 938
GluI GCNGC 1 cut(s) 938
GsaI CCCAGC 2 cut(s) 539, 1331
GsuI CTGGAG 1 cut(s) 1261
HaeIII GGCC 3 cut(s) 5, 347, 489
HapII CCGG 3 cut(s) 652, 855, 1129
Hin1II CATG 3 cut(s) 10, 265, 836
HincII GTYRAC 4 cut(s) 305, 325, 1049, 1061
HindII GTYRAC 4 cut(s) 305, 325, 1049, 1061
HindIII AAGCTT 3 cut(s) 163, 584, 1345
HinfI GANTC 4 cut(s) 251, 829, 848, 1183
HpaII CCGG 3 cut(s) 652, 855, 1129
HphI GGTGA 3 cut(s) 544, 988, 1216
Hpy166II GTNNAC 5 cut(s) 305, 325, 1049, 1061, 1079
Hpy188I TCNGA 5 cut(s) 94, 870, 924, 1041, 1276
Hpy188III TCNNGA 2 cut(s) 233, 377
Hpy8I GTNNAC 5 cut(s) 305, 325, 1049, 1061, 1079
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 4 cut(s) 99, 900, 1099, 1281
HpyCH4III ACNGT 3 cut(s) 302, 506, 899
HpyCH4IV ACGT 1 cut(s) 872
HpyCH4V TGCA 7 cut(s) 71, 209, 313, 368, 710, 1002, 1377
HpyF10VI GCNNNNNNNGC 6 cut(s) 171, 353, 567, 716, 1236, 1353
HpyF3I CTNAG 3 cut(s) 921, 1152, 1166
HpySE526I ACGT 1 cut(s) 872
Hsp92II CATG 3 cut(s) 10, 265, 836
Kzo9I GATC 2 cut(s) 229, 816
LmnI GCTCC 1 cut(s) 1144
Lsp1109I GCAGC 1 cut(s) 924
LweI GCATC 5 cut(s) 196, 555, 570, 657, 1138
MaeII ACGT 1 cut(s) 872
MalI GATC 2 cut(s) 231, 818
MboI GATC 2 cut(s) 229, 816
MboII GAAGA 9 cut(s) 5, 145, 452, 541, 826, 914, 1105, 1210, 1213
MfeI CAATTG 2 cut(s) 314, 1009
MflI RGATCY 1 cut(s) 816
MhlI GDGCHC 1 cut(s) 1141
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 838, 857
MnlI CCTC 6 cut(s) 27, 358, 407, 537, 593, 838
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 586
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 557, 927
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 128, 1310
MspCI CTTAAG 1 cut(s) 556
MspI CCGG 3 cut(s) 652, 855, 1129
MspR9I CCNGG 6 cut(s) 119, 465, 788, 1053, 1130, 1301
MunI CAATTG 2 cut(s) 314, 1009
Mva1269I GAATGC 2 cut(s) 719, 1025
MvaI CCWGG 5 cut(s) 119, 465, 788, 1053, 1301
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 6 cut(s) 171, 353, 567, 716, 1236, 1353
NciI CCSGG 1 cut(s) 1130
NdeII GATC 2 cut(s) 229, 816
NlaIII CATG 3 cut(s) 10, 265, 836
NlaIV GGNNCC 2 cut(s) 910, 964
NruI TCGCGA 1 cut(s) 234
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 1235
PctI GAATGC 2 cut(s) 719, 1025
PdmI GAANNNNTTC 1 cut(s) 586
PfeI GAWTC 2 cut(s) 251, 1183
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 1 cut(s) 939
PleI GAGTC 2 cut(s) 837, 856
PpsI GAGTC 2 cut(s) 837, 856
PshBI ATTAAT 1 cut(s) 927
Psp6I CCWGG 5 cut(s) 117, 463, 786, 1051, 1299
PspFI CCCAGC 2 cut(s) 535, 1327
PspGI CCWGG 5 cut(s) 117, 463, 786, 1051, 1299
PspN4I GGNNCC 2 cut(s) 910, 964
PspPI GGNCC 1 cut(s) 790
PstNI CAGNNNCTG 1 cut(s) 633
PsuI RGATCY 1 cut(s) 816
PvuII CAGCTG 2 cut(s) 128, 1310
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 4 cut(s) 686, 865, 883, 1021
RsaNI GTAC 4 cut(s) 685, 864, 882, 1020
SalI GTCGAC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 557, 927
SatI GCNGC 1 cut(s) 938
Sau3AI GATC 2 cut(s) 229, 816
Sau96I GGNCC 1 cut(s) 790
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 2 cut(s) 838, 857
ScrFI CCNGG 6 cut(s) 119, 465, 788, 1053, 1130, 1301
SduI GDGCHC 1 cut(s) 1141
SfaNI GCATC 5 cut(s) 196, 555, 570, 657, 1138
SfcI CTRYAG 1 cut(s) 1188
SinI GGWCC 1 cut(s) 790
SmlI CTYRAG 2 cut(s) 398, 556
SmoI CTYRAG 2 cut(s) 398, 556
SphI GCATGC 1 cut(s) 265
SsiI CCGC 1 cut(s) 1023
SspI AATATT 1 cut(s) 797
StyD4I CCNGG 6 cut(s) 117, 463, 786, 1051, 1128, 1299
TaaI ACNGT 3 cut(s) 302, 506, 899
TaiI ACGT 1 cut(s) 875
TaqI TCGA 1 cut(s) 304
TatI WGTACW 3 cut(s) 684, 863, 881
TfiI GAWTC 2 cut(s) 251, 1183
Tru1I TTAA 2 cut(s) 557, 927
Tru9I TTAA 2 cut(s) 557, 927
TscAI CASTG 1 cut(s) 784
TseI GCWGC 1 cut(s) 937
TspDTI ATGAA 5 cut(s) 51, 243, 485, 785, 1356
TspRI CASTG 1 cut(s) 784
Van91I CCANNNNNTGG 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 556
VpaK11BI GGWCC 1 cut(s) 790
VspI ATTAAT 1 cut(s) 927
XapI RAATTY 6 cut(s) 189, 283, 388, 667, 914, 1371
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 586
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.