Rroxscaffold_7G00169600

Domain of unknown function (DUF3403)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
10188882 .. 10193516
4635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169600.1

Sequence Viewer

Length: 2412 bp
ATGCCTAGCACCAGAGTTATCATCAGAAAAGAATTGTGTCCTCTTATCTGCTTCATATTTTTATTTAGCTTCTTTTTATCTTCATCTTTTGCAACAGACACACTAACACCCGGAGACACAGTTACAGTCAATCAAACCCTGGTTTCAGCTGGTGGAGTATTCGAGCTTGGCTTCTTCAAAAGTGACTTTTCAGGTAGTTACTATCTAGGAATTTGGTTCAGAGCTGATGCAAACAAGGTTGTTTGGGTTGGTAACCGCAAAGTTCCCATATTGGACGCTTCAGGAAGTCTTCAAATACTATCTGGGAATCTGGTTCTTATAGGCCGCCTTCAAAACCCTTTGCTAGTCAGTACTATGCTATGGCAAAGTTTTGATATTCCTACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCTCAGCTTAACAGTAACCAGCCAATCTATCACGTTTTTGTTTCTTGGGTCAACCCCCAAAACCCTGCTCTTGGCAACTTTACCTTAACCATGAACAGGATCAACTTTACAAAGCTTCAGGTTTGGCGAGGAAATATTCAAATGAATGTTGGGTTTTGGGATGGACATAATGTGCGGTTTATCTTTAATAACTCAACAAGTGGAAATGACTACAATTTTAGTTACCACTCCAATGCAGATGAAGTCTACTTTACTTTTAGTGGGAATCAGAATTATGACCTCATGTGGTTTGTGATGGCTTCCACGGGAAAGCTAGATCAGTATTATATGGTGGACGGGAAGATTTCTTCTGTGAGTAATGCTGTGTGTGATCCAACTGGGAGCTGCTTGAATTCCCTACCGTCTATGTGTAAGAATGGTGATAGTTTTTCACAGGTGAAGGGTTCACTGCCTTCTACTTTTAATAGTGGTTCCATAAATCTGGGGACTACAGATTGTGAATCTTGGTGCCGGAGCAATTGTTCTTGTACATCATTTGCTTCACCTCAGAATGATCAAGTATGCCAACTTTATTACGGGAGTACACATGATTTATTGAAGATCATAGAGAAGGGGACAGGAATTATATACATCCGCGGTGGTGCTCCAAGTGGAGTTGATTATTATATTGGCAGTAGAAAGGCTTCACTGGTGAGATTGCAAACTGGGTCATTAGACCCTATGTCAAGACTTGTTACGGAAAAATATTCTGCACAGCAACAAATGTTATATGAAATTTACCAACAAAATGGTGGCATTTTCACTCTTCAGATGGTAAGAACTGGAAACTCTGGTTGGCTACCGTCCTTCCTTTGGCGTCCCTCTTGGTTCTTATTCCAACCTCCTTATACTGCTATCTGCGCTGGAGAAGAAGACGTAAAGGTGCAACCTTGTGTAATTGATGTAGCAGAGGATCCAGTAACCAGACGGAAAGGCATTATCAATTTGGATCTGGTGAGTTTATTCCAAATGGGAACTAATGAGTCACAACTTCGTCATGACGAAGTCAGAGGGAAGTTACCAGTAGAAGGACCTGCAATTGCAGTGAAAAGACTGTCCAAAATTTCCCGTCAAGGGTTGAGGGAGTTCAAAAATGAAGTCTCAGTAATTTGTAACCTTCAACACAGGAACTTGGTTAGGCTTTTCGGATGCTGCATTGAAGCAGAAGAAAGTATACTTGTTTATGAGTACCTGCCCAACAAAAGCCTGGATTATTTCATTTTTGTATCTTTGATCACATATGAAATGAATTGGGTAGACTCAACCAAACGGGTACTTTTGGATTGGAGAAAGCGCATCAACATTATTGAAGGCATTGCTCAAGGACTTCAATATCTTCACAAATACTCAAGACTAAGGATCATTCACTGTGATTTAAAGCCCAGCAATATCTTGTTGGACAGTGACATGAACCCAAAAATTTCTGATTTTGGCATGGCAAGAATTTTTGGGGATAATGACTCTAAGGGGAAAACAAACAGGGTTGTTGGCACATTTGGTTACATGTCTCCTGAGTATGCCATGGATGGGCTCTTTTCTGAAAAGTCAGATGCGTTCAGCTTTGGGGTGATCTTATTAGAGATCATAAGCGCCAAGAAGAATATTGCCTTCTTTGAGGCAGATCACTCTCTGAACTTACTTGGCAAAGCTTGGAATCTGTGGAAAGAAGGCAGTAGCATGGAATTGATGGATCCAACACTCGGTGGTTCTTGTTCAAGCAGTGAAGTTATCAGATGCACTCAAATTGGTCTTCTGTGTGTGCAAGAAAGAGCTACTGATCGACCAACAATGTCCGATGTTATTTCTATGCTAAGCAATCAGTCATGTCCTCTGCCGCTTCCCAAACAGCCTGCATTTTTGAGTCAGTTAAGTTCAACTGATGCAGATTCATCTTCACGTAGGCACAGACATTACTCTCAAAATGACATGACTATTTCAGAAGAACATGGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

803

Amino Acids

90.13

Weight (kDa)

6.65

Isoelectric Point (pI)

44.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 101 - 145 1e-08 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 498 - 755 9.4e-37 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 498 - 687 3.6e-35 Protein kinase domain
DUF3403 PF11883 762 - 803 9.1e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 1498, 1656, 2397
AccB1I GGYRCC 1 cut(s) 924
AccI GTMKAC 3 cut(s) 663, 1630, 1713
AccII CGCG 1 cut(s) 1053
AciI CCGC 6 cut(s) 256, 325, 592, 1051, 1053, 2291
AclWI GGATC 8 cut(s) 524, 782, 1364, 1377, 1413, 1823, 2141, 2154
AcsI RAATTY 6 cut(s) 210, 808, 1191, 1518, 1875, 1899
AcuI CTGAAG 3 cut(s) 264, 518, 1208
AcyI GRCGYC 1 cut(s) 1273
AdeI CACNNNGTG 1 cut(s) 2159
AfaI GTAC 5 cut(s) 352, 946, 1000, 1646, 1731
AfiI CCNNNNNNNGG 7 cut(s) 488, 513, 1269, 1484, 1530, 1983, 2156
AflIII ACRYGT 1 cut(s) 1959
AhdI GACNNNNNGTC 1 cut(s) 1138
AjnI CCWGG 3 cut(s) 138, 397, 1662
AjuI GAANNNNNNNTTGG 2 cut(s) 1234, 1266
AloI GAACNNNNNNTCC 2 cut(s) 922, 954
Alw21I GWGCWC 1 cut(s) 1063
Alw26I GTCTC 4 cut(s) 108, 423, 1561, 1968
AlwI GGATC 8 cut(s) 524, 782, 1364, 1377, 1413, 1823, 2141, 2154
AoxI GGCC 1 cut(s) 322
ApeKI GCWGC 2 cut(s) 801, 1608
ApoI RAATTY 6 cut(s) 210, 808, 1191, 1518, 1875, 1899
ArsI GACNNNNNNTTYG 2 cut(s) 1539, 1571
Asp700I GAANNNNTTC 1 cut(s) 1099
AspLEI GCGC 3 cut(s) 1319, 1752, 2048
AspS9I GGNCC 1 cut(s) 1487
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 6 cut(s) 848, 865, 951, 1120, 1423, 2035
AvaII GGWCC 1 cut(s) 1487
BamHI GGATCC 2 cut(s) 1369, 2146
BanI GGYRCC 1 cut(s) 924
BanII GRGCYC 1 cut(s) 1989
BarI GAAGNNNNNNTAC 4 cut(s) 1084, 1116, 1614, 1646
BbsI GAAGAC 3 cut(s) 281, 1335, 2198
Bbv12I GWGCWC 1 cut(s) 1063
BbvI GCAGC 2 cut(s) 788, 1595
BccI CCATC 5 cut(s) 572, 706, 1222, 1976, 2137
BciT130I CCWGG 3 cut(s) 140, 399, 1664
BclI TGATCA 2 cut(s) 970, 1689
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 4 cut(s) 108, 423, 1561, 1968
BfaI CTAG 4 cut(s) 6, 206, 344, 731
BfmI CTRYAG 1 cut(s) 906
BfoI RGCGCY 1 cut(s) 2049
BfuAI ACCTGC 3 cut(s) 1498, 1656, 2397
BisI GCNGC 4 cut(s) 325, 802, 1609, 2291
BlpI GCTNAGC 1 cut(s) 2267
BlsI GCNGC 4 cut(s) 326, 803, 1610, 2292
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 4 cut(s) 111, 140, 399, 1664
Bme18I GGWCC 1 cut(s) 1487
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmgT120I GGNCC 1 cut(s) 1487
BmiI GGNNCC 4 cut(s) 889, 926, 1371, 2148
BmrFI CCNGG 4 cut(s) 111, 140, 399, 1664
BmrI ACTGGG 2 cut(s) 804, 1131
BmsI GCATC 6 cut(s) 217, 1595, 1761, 1996, 2180, 2326
BmuI ACTGGG 2 cut(s) 804, 1131
BpiI GAAGAC 3 cut(s) 281, 1335, 2198
BpmI CTGGAG 1 cut(s) 1341
Bpu1102I GCTNAGC 1 cut(s) 2267
BpuEI CTTGAG 2 cut(s) 1761, 1789
BpuMI CCSGG 1 cut(s) 111
BsaAI YACGTR 1 cut(s) 2354
BsaBI GATNNNNATC 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 1273
BsaI GGTCTC 1 cut(s) 423
BsaJI CCNNGG 5 cut(s) 138, 398, 720, 1051, 1977
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 922, 952
Bsc4I CCNNNNNNNGG 7 cut(s) 488, 513, 1269, 1484, 1530, 1983, 2156
Bse1I ACTGG 6 cut(s) 799, 1110, 1126, 1243, 1373, 1478
Bse3DI GCAATG 1 cut(s) 1770
Bse8I GATNNNNATC 1 cut(s) 390
BseBI CCWGG 3 cut(s) 140, 399, 1664
BseDI CCNNGG 5 cut(s) 138, 398, 720, 1051, 1977
BseGI GGATG 5 cut(s) 408, 583, 1047, 1610, 1987
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 7 cut(s) 488, 513, 1269, 1484, 1530, 1983, 2156
BseMI GCAATG 1 cut(s) 1770
BseMII CTCAG 4 cut(s) 434, 977, 1572, 1959
BseNI ACTGG 6 cut(s) 799, 1110, 1126, 1243, 1373, 1478
BseXI GCAGC 2 cut(s) 788, 1595
BseYI CCCAGC 1 cut(s) 1838
BsgI GTGCAG 1 cut(s) 1152
Bsh1236I CGCG 1 cut(s) 1053
BshFI GGCC 1 cut(s) 324
BshNI GGYRCC 1 cut(s) 924
BsiHKAI GWGCWC 1 cut(s) 1063
BsiSI CCGG 2 cut(s) 111, 928
BslFI GGGAC 3 cut(s) 916, 1045, 1260
BslI CCNNNNNNNGG 7 cut(s) 488, 513, 1269, 1484, 1530, 1983, 2156
BsmAI GTCTC 4 cut(s) 108, 423, 1561, 1968
BsmFI GGGAC 3 cut(s) 916, 1045, 1260
BsnI GGCC 1 cut(s) 324
Bso31I GGTCTC 1 cut(s) 423
Bsp1286I GDGCHC 2 cut(s) 1063, 1989
Bsp1407I TGTACA 1 cut(s) 944
Bsp1720I GCTNAGC 1 cut(s) 2267
Bsp19I CCATGG 1 cut(s) 1977
BspACI CCGC 6 cut(s) 256, 325, 592, 1051, 1053, 2291
BspANI GGCC 1 cut(s) 324
BspCNI CTCAG 4 cut(s) 433, 976, 1571, 1960
BspFNI CGCG 1 cut(s) 1053
BspHI TCATGA 1 cut(s) 1453
BspLI GGNNCC 4 cut(s) 889, 926, 1371, 2148
BspMI ACCTGC 3 cut(s) 1498, 1656, 2397
BspPI GGATC 8 cut(s) 524, 782, 1364, 1377, 1413, 1823, 2141, 2154
BspT107I GGYRCC 1 cut(s) 924
BspTNI GGTCTC 1 cut(s) 423
BsrDI GCAATG 1 cut(s) 1770
BsrGI TGTACA 1 cut(s) 944
BsrI ACTGG 6 cut(s) 799, 1110, 1126, 1243, 1373, 1478
BssECI CCNNGG 5 cut(s) 138, 398, 720, 1051, 1977
BssNAI GTATAC 1 cut(s) 1631
BssNI GRCGYC 1 cut(s) 1273
BssT1I CCWWGG 1 cut(s) 1977
Bst1107I GTATAC 1 cut(s) 1631
Bst2UI CCWGG 3 cut(s) 140, 399, 1664
Bst4CI ACNGT 8 cut(s) 121, 127, 431, 819, 1260, 1512, 1826, 1859
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 1 cut(s) 1273
BstAUI TGTACA 1 cut(s) 944
BstBAI YACGTR 1 cut(s) 2354
BstC8I GCNNGC 1 cut(s) 2307
BstDEI CTNAG 7 cut(s) 420, 963, 1558, 1811, 1920, 1968, 2267
BstDSI CCRYGG 3 cut(s) 720, 1051, 1977
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 5 cut(s) 408, 583, 1047, 1610, 1987
BstFNI CGCG 1 cut(s) 1053
BstH2I RGCGCY 1 cut(s) 2049
BstHHI GCGC 3 cut(s) 1319, 1752, 2048
BstMAI GTCTC 4 cut(s) 108, 423, 1561, 1968
BstMWI GCNNNNNNNGC 1 cut(s) 1316
BstNI CCWGG 3 cut(s) 140, 399, 1664
BstNSI RCATGY 1 cut(s) 1963
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 109, 138, 397, 1662
BstSFI CTRYAG 1 cut(s) 906
BstUI CGCG 1 cut(s) 1053
BstV1I GCAGC 2 cut(s) 788, 1595
BstV2I GAAGAC 3 cut(s) 281, 1335, 2198
BstX2I RGATCY 3 cut(s) 1369, 1405, 2146
BstXI CCANNNNNNTGG 2 cut(s) 898, 1205
BstYI RGATCY 3 cut(s) 1369, 1405, 2146
BstZ17I GTATAC 1 cut(s) 1631
BsuRI GGCC 1 cut(s) 324
BtgI CCRYGG 3 cut(s) 720, 1051, 1977
BtsCI GGATG 5 cut(s) 408, 583, 1047, 1610, 1987
BtsI GCAGTG 3 cut(s) 863, 1506, 2182
BtsIMutI CAGTG 6 cut(s) 863, 1103, 1506, 1822, 1864, 2182
BveI ACCTGC 3 cut(s) 1498, 1656, 2397
Cac8I GCNNGC 1 cut(s) 2307
CciI TCATGA 1 cut(s) 1453
CfoI GCGC 3 cut(s) 1319, 1752, 2048
Cfr13I GGNCC 1 cut(s) 1487
Cfr42I CCGCGG 1 cut(s) 1054
CseI GACGC 2 cut(s) 284, 1262
Csp6I GTAC 5 cut(s) 351, 945, 999, 1645, 1730
CviQI GTAC 5 cut(s) 351, 945, 999, 1645, 1730
DdeI CTNAG 7 cut(s) 420, 963, 1558, 1811, 1920, 1968, 2267
DraI TTTAAA 1 cut(s) 1833
DraIII CACNNNGTG 1 cut(s) 2159
DriI GACNNNNNGTC 1 cut(s) 1138
Eam1104I CTCTTC 1 cut(s) 1227
Eam1105I GACNNNNNGTC 1 cut(s) 1138
EarI CTCTTC 1 cut(s) 1227
Eco130I CCWWGG 1 cut(s) 1977
Eco24I GRGCYC 1 cut(s) 1989
Eco31I GGTCTC 1 cut(s) 423
Eco47I GGWCC 1 cut(s) 1487
Eco57I CTGAAG 3 cut(s) 264, 518, 1208
Eco91I GGTNACC 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 1487
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 808
EcoRII CCWGG 3 cut(s) 138, 397, 1662
EcoT14I CCWWGG 1 cut(s) 1977
EcoT38I GRGCYC 1 cut(s) 1989
ErhI CCWWGG 1 cut(s) 1977
FaqI GGGAC 3 cut(s) 916, 1045, 1260
FauNDI CATATG 1 cut(s) 1696
FbaI TGATCA 2 cut(s) 970, 1689
FblI GTMKAC 3 cut(s) 663, 1630, 1713
Fnu4HI GCNGC 4 cut(s) 325, 802, 1609, 2291
FokI GGATG 5 cut(s) 415, 590, 1034, 1617, 1994
FriOI GRGCYC 1 cut(s) 1989
Fsp4HI GCNGC 4 cut(s) 325, 802, 1609, 2291
FspBI CTAG 4 cut(s) 6, 206, 344, 731
GlaI GCGC 3 cut(s) 1318, 1751, 2047
GluI GCNGC 4 cut(s) 325, 802, 1609, 2291
GsaI CCCAGC 1 cut(s) 1842
GsuI CTGGAG 1 cut(s) 1341
HaeII RGCGCY 1 cut(s) 2049
HaeIII GGCC 1 cut(s) 324
HapII CCGG 2 cut(s) 111, 928
HgaI GACGC 2 cut(s) 284, 1262
HhaI GCGC 3 cut(s) 1319, 1752, 2048
Hin1I GRCGYC 1 cut(s) 1273
Hin6I GCGC 3 cut(s) 1317, 1750, 2046
HinP1I GCGC 3 cut(s) 1317, 1750, 2046
HincII GTYRAC 1 cut(s) 469
HindII GTYRAC 1 cut(s) 469
HindIII AAGCTT 2 cut(s) 530, 2103
HinfI GANTC 9 cut(s) 307, 682, 917, 1439, 1715, 1916, 2110, 2317, 2342
HpaII CCGG 2 cut(s) 111, 928
HphI GGTGA 6 cut(s) 848, 865, 951, 1120, 1423, 2035
Hpy166II GTNNAC 7 cut(s) 469, 664, 751, 863, 1001, 1631, 1714
Hpy188III TCNNGA 5 cut(s) 282, 1143, 1454, 1806, 1967
Hpy8I GTNNAC 7 cut(s) 469, 664, 751, 863, 1001, 1631, 1714
HpyCH4III ACNGT 8 cut(s) 121, 127, 431, 819, 1260, 1512, 1826, 1859
HpyCH4IV ACGT 3 cut(s) 450, 1332, 2353
HpyF10VI GCNNNNNNNGC 1 cut(s) 1316
HpyF3I CTNAG 7 cut(s) 420, 963, 1558, 1811, 1920, 1968, 2267
HpySE526I ACGT 3 cut(s) 450, 1332, 2353
Hsp92I GRCGYC 1 cut(s) 1273
HspAI GCGC 3 cut(s) 1317, 1750, 2046
Ksp22I TGATCA 2 cut(s) 970, 1689
KspI CCGCGG 1 cut(s) 1054
LmnI GCTCC 3 cut(s) 798, 930, 1066
Lsp1109I GCAGC 2 cut(s) 788, 1595
LweI GCATC 6 cut(s) 217, 1595, 1761, 1996, 2180, 2326
MaeI CTAG 4 cut(s) 6, 206, 344, 731
MaeII ACGT 3 cut(s) 450, 1332, 2353
MfeI CAATTG 2 cut(s) 934, 1494
MflI RGATCY 3 cut(s) 1369, 1405, 2146
MhlI GDGCHC 2 cut(s) 1063, 1989
MlyI GAGTC 4 cut(s) 1448, 1709, 1910, 2326
MmeI TCCRAC 4 cut(s) 815, 1318, 1833, 2174
MroXI GAANNNNTTC 1 cut(s) 1099
MseI TTAA 6 cut(s) 426, 503, 603, 879, 1832, 2324
MslI CAYNNNNRTG 1 cut(s) 648
MspA1I CMGCKG 2 cut(s) 149, 1053
MspI CCGG 2 cut(s) 111, 928
MspR9I CCNGG 4 cut(s) 111, 140, 399, 1664
MunI CAATTG 2 cut(s) 934, 1494
MvaI CCWGG 3 cut(s) 140, 399, 1664
MvnI CGCG 1 cut(s) 1053
MwoI GCNNNNNNNGC 1 cut(s) 1316
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 1977
NdeI CATATG 1 cut(s) 1696
NlaIV GGNNCC 4 cut(s) 889, 926, 1371, 2148
NmuCI GTSAC 3 cut(s) 182, 1440, 1859
NspI RCATGY 1 cut(s) 1963
PagI TCATGA 1 cut(s) 1453
PciI ACATGT 1 cut(s) 1959
PdmI GAANNNNTTC 1 cut(s) 1099
PfeI GAWTC 5 cut(s) 307, 682, 917, 2110, 2342
PflFI GACNNNGTC 1 cut(s) 1460
PkrI GCNGC 4 cut(s) 326, 803, 1610, 2292
PleI GAGTC 4 cut(s) 1447, 1709, 1910, 2325
PpsI GAGTC 4 cut(s) 1447, 1709, 1910, 2325
Ppu21I YACGTR 1 cut(s) 2354
PpuMI RGGWCCY 1 cut(s) 1487
PscI ACATGT 1 cut(s) 1959
Psp5II RGGWCCY 1 cut(s) 1487
Psp6I CCWGG 3 cut(s) 138, 397, 1662
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 1838
PspGI CCWGG 3 cut(s) 138, 397, 1662
PspN4I GGNNCC 4 cut(s) 889, 926, 1371, 2148
PspPI GGNCC 1 cut(s) 1487
PspPPI RGGWCCY 1 cut(s) 1487
PsuI RGATCY 3 cut(s) 1369, 1405, 2146
PsyI GACNNNGTC 1 cut(s) 1460
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 5 cut(s) 352, 946, 1000, 1646, 1731
RsaNI GTAC 5 cut(s) 351, 945, 999, 1645, 1730
RseI CAYNNNNRTG 1 cut(s) 648
SacII CCGCGG 1 cut(s) 1054
SaqAI TTAA 6 cut(s) 426, 503, 603, 879, 1832, 2324
SatI GCNGC 4 cut(s) 325, 802, 1609, 2291
Sau96I GGNCC 1 cut(s) 1487
ScaI AGTACT 1 cut(s) 352
SchI GAGTC 4 cut(s) 1448, 1709, 1910, 2326
ScrFI CCNGG 4 cut(s) 111, 140, 399, 1664
SduI GDGCHC 2 cut(s) 1063, 1989
SfaNI GCATC 6 cut(s) 217, 1595, 1761, 1996, 2180, 2326
SfcI CTRYAG 1 cut(s) 906
Sfr303I CCGCGG 1 cut(s) 1054
SgrBI CCGCGG 1 cut(s) 1054
SinI GGWCC 1 cut(s) 1487
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 2 cut(s) 1776, 1804
SmoI CTYRAG 2 cut(s) 1776, 1804
SsiI CCGC 6 cut(s) 256, 325, 592, 1051, 1053, 2291
SspI AATATT 3 cut(s) 553, 1163, 2059
SspMI CTAG 4 cut(s) 6, 206, 344, 731
StyD4I CCNGG 4 cut(s) 109, 138, 397, 1662
StyI CCWWGG 1 cut(s) 1977
TaaI ACNGT 8 cut(s) 121, 127, 431, 819, 1260, 1512, 1826, 1859
TaiI ACGT 3 cut(s) 453, 1335, 2356
TaqI TCGA 2 cut(s) 162, 2236
TatI WGTACW 3 cut(s) 350, 944, 998
TauI GCSGC 2 cut(s) 327, 2293
TfiI GAWTC 5 cut(s) 307, 682, 917, 2110, 2342
Tru1I TTAA 6 cut(s) 426, 503, 603, 879, 1832, 2324
Tru9I TTAA 6 cut(s) 426, 503, 603, 879, 1832, 2324
TscAI CASTG 6 cut(s) 870, 1110, 1506, 1829, 1864, 2182
TseFI GTSAC 3 cut(s) 182, 1440, 1859
TseI GCWGC 2 cut(s) 801, 1608
Tsp45I GTSAC 3 cut(s) 182, 1440, 1859
TspGWI ACGGA 2 cut(s) 1169, 1399
TspRI CASTG 6 cut(s) 870, 1110, 1506, 1829, 1864, 2182
Tth111I GACNNNGTC 1 cut(s) 1460
VpaK11BI GGWCC 1 cut(s) 1487
XapI RAATTY 6 cut(s) 210, 808, 1191, 1518, 1875, 1899
XceI RCATGY 1 cut(s) 1963
XcmI CCANNNNNNNNNTGG 2 cut(s) 1205, 1660
XmiI GTMKAC 3 cut(s) 663, 1630, 1713
XmnI GAANNNNTTC 1 cut(s) 1099
XspI CTAG 4 cut(s) 6, 206, 344, 731
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.