Rh6AG392100

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000509
Physical Location & Seq
Reverse (-)
59073448 .. 59078038
4591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG392100.1

Sequence Viewer

Length: 2415 bp
ATGCCTAGCACGAGGGTTATCATCAGAAAAGAATTGTGTCCTCTTATCTGCTTCATATTTTTATTTAGCTTCTTTTTATCTTCATCTTTTGCAACAGACACACTAACACCCGGAGACACACTTACAGTCAATCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGAGCTTGGCTTCTTCAAAAGTGACTTTTCAGGTAGTTACTATCTAGGAATTTGGTTCAGAGCCGATGCAAACAAGGTTGTTTGGGTTGGTAACCGCAGAGTTCCCATATTGGACGCTTCAGGAAGTCTTCAAATACTATCTGGGAATCTGGTTCTTATAGACCGCCGTCAAAACCCTTTGCTAGTCAGTACAGGAAATGTTGCCATGGCCATAAACGCAACCGCAACACTTCTTGACTCTGGAAATTTTATCCTTAAAGAAGAAAATACAGGTACTATGCTATGGCAAAGTTTTGATATTCCTACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCTCAGCTTAACAGTAACCAGCCAATCTTTCGCGCTTTTGTTTCTTGGGTCAACCCCCAAAATCCTGCTCTTGGCAACTTTACTTTAACCATGAACAGGATCAACTTTACAAAGCTTCAGGTTTGGAGAGGAAATATTCAAATGAATGTTGGGTCTTGGGATGGACATAATGTGCGGTTTATCTTTAATAACTCAACAAGTGGAAATGACTACAATTTTAGTTACCACTCCAATGCAGATGAAGTCTACTTTACTTTTAGTGGGAATAAGAATTATGACCTCATGTGGTTTGTGATGGCTTCGACGGGAAAGCTAGATCAGTATTATATGGTGGATGGGAAGATTTCTTCTGTGAGTAATGCTGTGTGTGATCCAACTGGGAGCTGCTTGAATTCCCTACCGTCTATGTGTAAGATTGGTGATAGTTTTTCACAGGTGAAGGGTTCACTGCCTTCTACTTTTAATAGTGGTTCTATAAATATGGGGACTGCAGATTGTGAATCTTGGTGCCGGAGCAATTGTTCTTGTACATCATTTGCTTCACCTCAGAATGAGCAAGTATGCCAACTTTATTACGGGAGTACACATGATTTATTGAAGATCATAGAGAAGGGGACAGGAATTGTATACATCCGCGGTGGTGCTCCAAGTGATGGTAAGAACTGGAAACTCTGGTTGGCTACCGTCCTTCCTATGGCGTCCCTCTTGGTTCTTATTCCAGCCTCCTTATGCTGCTATCTGCGTTGGAGAAGAAGACGTAAAGAGGATCCAGTAACCCGACGGGAAGGCATTATCAATTTGGATCTGGTGAGTTTATTCCAAATAGGAACTAATGAGTCACAACTTCGTCATGATGAAGTCAGAGGTACAAATAACCTAGAATTAGGCAGACAGAAGGATCAAGAACTGCCCTTGTTTAGCTTTGCTACCATACAGACTGCAACACATAACTTTGCGGAGGCTAATAAACTTGGGGAAGGAGGATTTGGGCCTGTCTATAAGGGGAAGTTACCAGTAGAAGGACCTGTAATTGCAGTGAAAAGACTGTCCAAAATTTCCCGTCAAGGGTTGGGGGAGTTCAAAAATGAAGTCTCAGTAATTTGTAGGCTTCAACACAGGAACTTGGTTAGGCTTTTTGGATGCTGCATTGAAGCAGAAGAAAGTATACTTGTTTATGAGTACATGCCCAATAAAAGCCTGGATTTTTTCATTTTTGACTCAACCAAACGGGTCCTTTTGGATTGGAGAAAGCGCATCAACATTATTGAAGGCATTGCTCAAGGACTTCAATATCTTCACAAATACTCAAGATTAAGGATCATTCACCGTGATTTAAAGCCCAGCAATATCTTGTTGGACAGTGACATGAACCCAAAAATTTCTGATTTTGGCATGGCAAGAATTTTTGGGGATAATGACTCTAAGGGGAAAACAAACAGGGTTGTTGGCACATTTGGTTACATGTCTCCTGAGTATGCCATGGACGGGCACTTTTCTGAAAAGTCAGATGTGTTCAGCTTTGGGGTGATCTTATTAGAGATCATAAGTGCCAAGAAGAATATTGCCTTCTTTGAGGCAGATCACTCTCTGAACTTACTTGGCAAAGCTTGGAATCTGTGGAAAGAAGGCAGTAGCATGGAGTTGATGGATCCAACACTCGGTGGTTCTTGTTCAAGCAGTGAAGCTATCAGATGCACTCAAATTGGTCTTCTGTGTGTGCAAGAAAGAGCTACTGATCGACCAACAATGTCAGATATTATTTCTATGCTAAGCAATCAGTCATGTCCTCTGCCGCTTCCCAAACAGCCTGCATTTTTGAGTCAGTTAAGTTCAACTGATGCAGATTCATCTCCAAGTAGGCACAGACATTACTCTCAAAATGACATGACTATTTCATCAGAACATGGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

804

Amino Acids

89.81

Weight (kDa)

8.15

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 80 - 174 8.2e-26 D-mannose binding lectin
Pkinase PF00069 486 - 689 1.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 489 - 756 6.6e-46 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 763 - 804 1.1e-06 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2400
AccB1I GGYRCC 1 cut(s) 1008
AccB7I CCANNNNNTGG 1 cut(s) 1154
AccI GTMKAC 3 cut(s) 747, 1128, 1666
AccII CGCG 2 cut(s) 534, 1137
AciI CCGC 8 cut(s) 256, 325, 384, 676, 1135, 1137, 1457, 2294
AclWI GGATC 9 cut(s) 608, 866, 1262, 1275, 1311, 1407, 1826, 2144, 2157
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 6 cut(s) 210, 406, 892, 1554, 1878, 1902
AcuI CTGAAG 2 cut(s) 264, 602
AcyI GRCGYC 1 cut(s) 1199
AdeI CACNNNGTG 1 cut(s) 2162
AfaI GTAC 6 cut(s) 352, 436, 1030, 1084, 1369, 1682
AfiI CCNNNNNNNGG 8 cut(s) 572, 597, 1154, 1195, 1520, 1566, 1986, 2159
AflIII ACRYGT 1 cut(s) 1962
AjnI CCWGG 3 cut(s) 138, 481, 1698
AjuI GAANNNNNNNTTGG 4 cut(s) 1160, 1192, 1470, 1502
AloI GAACNNNNNNTCC 2 cut(s) 1006, 1038
Alw21I GWGCWC 1 cut(s) 1147
Alw26I GTCTC 4 cut(s) 108, 507, 1597, 1971
AlwI GGATC 9 cut(s) 608, 866, 1262, 1275, 1311, 1407, 1826, 2144, 2157
AoxI GGCC 2 cut(s) 369, 1490
ApeKI GCWGC 3 cut(s) 885, 1233, 1644
ApoI RAATTY 6 cut(s) 210, 406, 892, 1554, 1878, 1902
ArsI GACNNNNNNTTYG 2 cut(s) 1575, 1607
AspLEI GCGC 2 cut(s) 536, 1755
AspS9I GGNCC 3 cut(s) 1490, 1523, 1732
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 6 cut(s) 932, 949, 1035, 1321, 1817, 2038
AvaII GGWCC 2 cut(s) 1523, 1732
BaeGI GKGCMC 1 cut(s) 1992
BalI TGGCCA 1 cut(s) 371
BamHI GGATCC 2 cut(s) 1267, 2149
BanI GGYRCC 1 cut(s) 1008
BarI GAAGNNNNNNTAC 2 cut(s) 1650, 1682
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 3 cut(s) 281, 1261, 2201
Bbv12I GWGCWC 1 cut(s) 1147
BbvI GCAGC 3 cut(s) 872, 1220, 1631
BccI CCATC 5 cut(s) 656, 790, 830, 1148, 2140
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 3 cut(s) 140, 483, 1700
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 4 cut(s) 108, 507, 1597, 1971
BfaI CTAG 5 cut(s) 6, 206, 344, 815, 1379
BfmI CTRYAG 1 cut(s) 990
BfuAI ACCTGC 1 cut(s) 2400
BisI GCNGC 4 cut(s) 886, 1234, 1645, 2294
BlpI GCTNAGC 1 cut(s) 2270
BlsI GCNGC 4 cut(s) 887, 1235, 1646, 2295
Bme1390I CCNGG 4 cut(s) 111, 140, 483, 1700
Bme18I GGWCC 2 cut(s) 1523, 1732
BmgT120I GGNCC 3 cut(s) 1490, 1523, 1732
BmiI GGNNCC 4 cut(s) 1010, 1269, 1733, 2151
BmrFI CCNGG 4 cut(s) 111, 140, 483, 1700
BmrI ACTGGG 1 cut(s) 888
BmsI GCATC 5 cut(s) 217, 1631, 1764, 2183, 2329
BmuI ACTGGG 1 cut(s) 888
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 3 cut(s) 281, 1261, 2201
Bpu1102I GCTNAGC 1 cut(s) 2270
BpuEI CTTGAG 2 cut(s) 1764, 1792
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 1199
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 5 cut(s) 138, 366, 482, 1135, 1980
BsaXI ACNNNNNCTCC 2 cut(s) 1006, 1036
Bsc4I CCNNNNNNNGG 8 cut(s) 572, 597, 1154, 1195, 1520, 1566, 1986, 2159
Bse1I ACTGG 4 cut(s) 883, 1169, 1271, 1514
Bse3DI GCAATG 1 cut(s) 1773
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 3 cut(s) 140, 483, 1700
BseDI CCNNGG 5 cut(s) 138, 366, 482, 1135, 1980
BseGI GGATG 5 cut(s) 492, 667, 841, 1131, 1646
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 8 cut(s) 572, 597, 1154, 1195, 1520, 1566, 1986, 2159
BseMI GCAATG 1 cut(s) 1773
BseMII CTCAG 4 cut(s) 518, 1061, 1608, 1962
BseNI ACTGG 4 cut(s) 883, 1169, 1271, 1514
BseSI GKGCMC 1 cut(s) 1992
BseXI GCAGC 3 cut(s) 872, 1220, 1631
BseYI CCCAGC 1 cut(s) 1841
Bsh1236I CGCG 2 cut(s) 534, 1137
BshFI GGCC 2 cut(s) 371, 1492
BshNI GGYRCC 1 cut(s) 1008
BsiHKAI GWGCWC 1 cut(s) 1147
BsiSI CCGG 2 cut(s) 111, 1012
BslFI GGGAC 3 cut(s) 1000, 1129, 1186
BslI CCNNNNNNNGG 8 cut(s) 572, 597, 1154, 1195, 1520, 1566, 1986, 2159
BsmAI GTCTC 4 cut(s) 108, 507, 1597, 1971
BsmFI GGGAC 3 cut(s) 1000, 1129, 1186
BsnI GGCC 2 cut(s) 371, 1492
Bso31I GGTCTC 1 cut(s) 507
Bsp1286I GDGCHC 2 cut(s) 1147, 1992
Bsp1407I TGTACA 1 cut(s) 1028
Bsp1720I GCTNAGC 1 cut(s) 2270
Bsp19I CCATGG 2 cut(s) 366, 1980
BspACI CCGC 8 cut(s) 256, 325, 384, 676, 1135, 1137, 1457, 2294
BspANI GGCC 2 cut(s) 371, 1492
BspCNI CTCAG 4 cut(s) 517, 1060, 1607, 1963
BspFNI CGCG 2 cut(s) 534, 1137
BspHI TCATGA 1 cut(s) 1351
BspLI GGNNCC 4 cut(s) 1010, 1269, 1733, 2151
BspMAI CTGCAG 1 cut(s) 994
BspMI ACCTGC 1 cut(s) 2400
BspPI GGATC 9 cut(s) 608, 866, 1262, 1275, 1311, 1407, 1826, 2144, 2157
BspT107I GGYRCC 1 cut(s) 1008
BspTNI GGTCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 1773
BsrGI TGTACA 1 cut(s) 1028
BsrI ACTGG 4 cut(s) 883, 1169, 1271, 1514
BssECI CCNNGG 5 cut(s) 138, 366, 482, 1135, 1980
BssNAI GTATAC 2 cut(s) 1129, 1667
BssNI GRCGYC 1 cut(s) 1199
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 366, 1980
Bst1107I GTATAC 2 cut(s) 1129, 1667
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 140, 483, 1700
Bst4CI ACNGT 7 cut(s) 127, 515, 903, 1186, 1548, 1829, 1862
BstACI GRCGYC 1 cut(s) 1199
BstAUI TGTACA 1 cut(s) 1028
BstC8I GCNNGC 1 cut(s) 2310
BstDEI CTNAG 6 cut(s) 504, 1047, 1594, 1923, 1971, 2270
BstDSI CCRYGG 3 cut(s) 366, 1135, 1980
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 5 cut(s) 492, 667, 841, 1131, 1646
BstFNI CGCG 2 cut(s) 534, 1137
BstHHI GCGC 2 cut(s) 536, 1755
BstMAI GTCTC 4 cut(s) 108, 507, 1597, 1971
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 3 cut(s) 140, 483, 1700
BstNSI RCATGY 2 cut(s) 1687, 1966
BstPAI GACNNNNGTC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 109, 138, 481, 1698
BstSFI CTRYAG 1 cut(s) 990
BstSLI GKGCMC 1 cut(s) 1992
BstUI CGCG 2 cut(s) 534, 1137
BstV1I GCAGC 3 cut(s) 872, 1220, 1631
BstV2I GAAGAC 3 cut(s) 281, 1261, 2201
BstX2I RGATCY 3 cut(s) 1267, 1303, 2149
BstYI RGATCY 3 cut(s) 1267, 1303, 2149
BstZ17I GTATAC 2 cut(s) 1129, 1667
BsuRI GGCC 2 cut(s) 371, 1492
BtgI CCRYGG 3 cut(s) 366, 1135, 1980
BtsCI GGATG 5 cut(s) 492, 667, 841, 1131, 1646
BtsI GCAGTG 3 cut(s) 947, 1542, 2185
BtsIMutI CAGTG 4 cut(s) 947, 1542, 1867, 2185
BveI ACCTGC 1 cut(s) 2400
Cac8I GCNNGC 1 cut(s) 2310
CciI TCATGA 1 cut(s) 1351
CfoI GCGC 2 cut(s) 536, 1755
Cfr13I GGNCC 3 cut(s) 1490, 1523, 1732
Cfr42I CCGCGG 1 cut(s) 1138
CseI GACGC 2 cut(s) 284, 1188
Csp6I GTAC 6 cut(s) 351, 435, 1029, 1083, 1368, 1681
CviQI GTAC 6 cut(s) 351, 435, 1029, 1083, 1368, 1681
DdeI CTNAG 6 cut(s) 504, 1047, 1594, 1923, 1971, 2270
DraI TTTAAA 1 cut(s) 1836
DraIII CACNNNGTG 1 cut(s) 2162
EaeI YGGCCR 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 366, 1980
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 2 cut(s) 1523, 1732
Eco57I CTGAAG 2 cut(s) 264, 602
Eco91I GGTNACC 1 cut(s) 251
EcoO109I RGGNCCY 2 cut(s) 1523, 1732
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 892
EcoRII CCWGG 3 cut(s) 138, 481, 1698
EcoT14I CCWWGG 2 cut(s) 366, 1980
ErhI CCWWGG 2 cut(s) 366, 1980
FaqI GGGAC 3 cut(s) 1000, 1129, 1186
FblI GTMKAC 3 cut(s) 747, 1128, 1666
Fnu4HI GCNGC 4 cut(s) 886, 1234, 1645, 2294
FokI GGATG 5 cut(s) 499, 674, 848, 1118, 1653
Fsp4HI GCNGC 4 cut(s) 886, 1234, 1645, 2294
FspBI CTAG 5 cut(s) 6, 206, 344, 815, 1379
GlaI GCGC 2 cut(s) 535, 1754
GluI GCNGC 4 cut(s) 886, 1234, 1645, 2294
GsaI CCCAGC 1 cut(s) 1845
HaeIII GGCC 2 cut(s) 371, 1492
HapII CCGG 2 cut(s) 111, 1012
HgaI GACGC 2 cut(s) 284, 1188
HhaI GCGC 2 cut(s) 536, 1755
Hin1I GRCGYC 1 cut(s) 1199
Hin6I GCGC 2 cut(s) 534, 1753
HinP1I GCGC 2 cut(s) 534, 1753
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HindIII AAGCTT 2 cut(s) 614, 2106
HinfI GANTC 9 cut(s) 307, 398, 1001, 1337, 1718, 1919, 2113, 2320, 2345
HpaII CCGG 2 cut(s) 111, 1012
HphI GGTGA 6 cut(s) 932, 949, 1035, 1321, 1817, 2038
Hpy166II GTNNAC 6 cut(s) 553, 748, 947, 1085, 1129, 1667
Hpy188III TCNNGA 7 cut(s) 282, 395, 402, 1352, 1403, 1809, 1970
Hpy8I GTNNAC 6 cut(s) 553, 748, 947, 1085, 1129, 1667
Hpy99I CGWCG 2 cut(s) 808, 1284
HpyCH4III ACNGT 7 cut(s) 127, 515, 903, 1186, 1548, 1829, 1862
HpyCH4IV ACGT 1 cut(s) 1258
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 6 cut(s) 504, 1047, 1594, 1923, 1971, 2270
HpySE526I ACGT 1 cut(s) 1258
Hsp92I GRCGYC 1 cut(s) 1199
HspAI GCGC 2 cut(s) 534, 1753
KspI CCGCGG 1 cut(s) 1138
LmnI GCTCC 3 cut(s) 882, 1014, 1150
Lsp1109I GCAGC 3 cut(s) 872, 1220, 1631
LweI GCATC 5 cut(s) 217, 1631, 1764, 2183, 2329
MaeI CTAG 5 cut(s) 6, 206, 344, 815, 1379
MaeII ACGT 1 cut(s) 1258
MfeI CAATTG 1 cut(s) 1018
MflI RGATCY 3 cut(s) 1267, 1303, 2149
MhlI GDGCHC 2 cut(s) 1147, 1992
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 5 cut(s) 392, 1346, 1712, 1913, 2329
MmeI TCCRAC 4 cut(s) 899, 1226, 1836, 2177
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 8 cut(s) 417, 510, 587, 687, 963, 1814, 1835, 2327
MslI CAYNNNNRTG 1 cut(s) 732
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 2 cut(s) 149, 1137
MspI CCGG 2 cut(s) 111, 1012
MspR9I CCNGG 4 cut(s) 111, 140, 483, 1700
MunI CAATTG 1 cut(s) 1018
MvaI CCWGG 3 cut(s) 140, 483, 1700
MvnI CGCG 2 cut(s) 534, 1137
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 2 cut(s) 366, 1980
NlaIV GGNNCC 4 cut(s) 1010, 1269, 1733, 2151
NmuCI GTSAC 3 cut(s) 182, 1338, 1862
NspI RCATGY 2 cut(s) 1687, 1966
PagI TCATGA 1 cut(s) 1351
PciI ACATGT 1 cut(s) 1962
PfeI GAWTC 4 cut(s) 307, 1001, 2113, 2345
PflMI CCANNNNNTGG 1 cut(s) 1154
PkrI GCNGC 4 cut(s) 887, 1235, 1646, 2295
PleI GAGTC 5 cut(s) 392, 1345, 1712, 1913, 2328
PpsI GAGTC 5 cut(s) 392, 1345, 1712, 1913, 2328
PpuMI RGGWCCY 2 cut(s) 1523, 1732
PscI ACATGT 1 cut(s) 1962
PshAI GACNNNNGTC 1 cut(s) 327
Psp5II RGGWCCY 2 cut(s) 1523, 1732
Psp6I CCWGG 3 cut(s) 138, 481, 1698
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 1841
PspGI CCWGG 3 cut(s) 138, 481, 1698
PspN4I GGNNCC 4 cut(s) 1010, 1269, 1733, 2151
PspPI GGNCC 3 cut(s) 1490, 1523, 1732
PspPPI RGGWCCY 2 cut(s) 1523, 1732
PstI CTGCAG 1 cut(s) 994
PsuI RGATCY 3 cut(s) 1267, 1303, 2149
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 6 cut(s) 352, 436, 1030, 1084, 1369, 1682
RsaNI GTAC 6 cut(s) 351, 435, 1029, 1083, 1368, 1681
RseI CAYNNNNRTG 1 cut(s) 732
SacII CCGCGG 1 cut(s) 1138
SaqAI TTAA 8 cut(s) 417, 510, 587, 687, 963, 1814, 1835, 2327
SatI GCNGC 4 cut(s) 886, 1234, 1645, 2294
Sau96I GGNCC 3 cut(s) 1490, 1523, 1732
SchI GAGTC 5 cut(s) 392, 1346, 1712, 1913, 2329
ScrFI CCNGG 4 cut(s) 111, 140, 483, 1700
SduI GDGCHC 2 cut(s) 1147, 1992
SfaNI GCATC 5 cut(s) 217, 1631, 1764, 2183, 2329
SfcI CTRYAG 1 cut(s) 990
Sfr303I CCGCGG 1 cut(s) 1138
SgrBI CCGCGG 1 cut(s) 1138
SinI GGWCC 2 cut(s) 1523, 1732
SmiMI CAYNNNNRTG 1 cut(s) 732
SmlI CTYRAG 2 cut(s) 1779, 1807
SmoI CTYRAG 2 cut(s) 1779, 1807
SsiI CCGC 8 cut(s) 256, 325, 384, 676, 1135, 1137, 1457, 2294
SspI AATATT 2 cut(s) 637, 2062
SspMI CTAG 5 cut(s) 6, 206, 344, 815, 1379
StyD4I CCNGG 4 cut(s) 109, 138, 481, 1698
StyI CCWWGG 2 cut(s) 366, 1980
TaaI ACNGT 7 cut(s) 127, 515, 903, 1186, 1548, 1829, 1862
TaiI ACGT 1 cut(s) 1261
TaqI TCGA 3 cut(s) 162, 803, 2239
TatI WGTACW 4 cut(s) 350, 1028, 1082, 1680
TauI GCSGC 1 cut(s) 2296
TfiI GAWTC 4 cut(s) 307, 1001, 2113, 2345
Tru1I TTAA 8 cut(s) 417, 510, 587, 687, 963, 1814, 1835, 2327
Tru9I TTAA 8 cut(s) 417, 510, 587, 687, 963, 1814, 1835, 2327
TscAI CASTG 4 cut(s) 954, 1542, 1867, 2185
TseFI GTSAC 3 cut(s) 182, 1338, 1862
TseI GCWGC 3 cut(s) 885, 1233, 1644
Tsp45I GTSAC 3 cut(s) 182, 1338, 1862
TspRI CASTG 4 cut(s) 954, 1542, 1867, 2185
Van91I CCANNNNNTGG 1 cut(s) 1154
VpaK11BI GGWCC 2 cut(s) 1523, 1732
XapI RAATTY 6 cut(s) 210, 406, 892, 1554, 1878, 1902
XceI RCATGY 2 cut(s) 1687, 1966
XcmI CCANNNNNNNNNTGG 1 cut(s) 1696
XmiI GTMKAC 3 cut(s) 747, 1128, 1666
XspI CTAG 5 cut(s) 6, 206, 344, 815, 1379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.