Rroxscaffold_7G00169580

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000509
Physical Location & Seq
Forward (+)
10170066 .. 10175782
5717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169580.1

Sequence Viewer

Length: 732 bp
ATGAACATTATTGATGGGATTTCTCAAGGCCTTCTATATCTTCACAAATACTCAAGATTGCGGATCATTCACCGTGATCTAAAGACCAGCAATATTTTGCTAGACAACGACATGAACCCTAAAATTTCTGATTTTGGCATGGCAAGGATTTTTGGGGACAATGACACTAGAGGAAAAACAAACCGGGTTGTTGGTACATTTGGTTACATGTCTCCGGAGTATGCTATGGGCGGTCTATTTTCTGAAAAATCAGATGTGTTTAGCTTCGGGGTGATCTTATTAGAGGTCATTAGTGGGAAGAAGAACATTCCATTTTTTGAGTCTGATCAAGCTAGTCTAAACTTACTTGGCAATGCCTGGAATTTATGGAATGAAGGCAAGAGCATGGAGTTATTGGATTCAGCACTGGTTGCATCTTGTTCCAGCAGTGAAGTTATGAGGTGCATTCAGATGGGTCTTTTGTGCGTGCAAGAAAGAGCCATGGATCGACCTAATATGTCGGACGTGGCTTCGATGCTAAGCAATCAATCAATTCCTCTGCCTCTTCCAAAAGAACCGGCATTTTGGAGCCAGCTAAGTTCTACTGATGCAGATACATCTTCAAGCAGGCAAAGACATTACTCTACAATTGAGTCAAGTCTAACTATTTCAGAAGTGCATGCAAGGTGGTACCGATTGGTACCGATTGGTACCGAACCGATTGGATTCGGGCCTAATCGGTATGGCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

243

Amino Acids

27.09

Weight (kDa)

5.83

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 2 - 110 2e-26 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 3 - 172 2.7e-24 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 3 cut(s) 669, 679, 689
AccB1I GGYRCC 3 cut(s) 669, 679, 689
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 2 cut(s) 61, 231
AclWI GGATC 2 cut(s) 71, 492
AcsI RAATTY 2 cut(s) 123, 361
AfaI GTAC 4 cut(s) 196, 671, 681, 691
AflIII ACRYGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 603
AjiI CACGTC 1 cut(s) 505
AjnI CCWGG 1 cut(s) 356
AluBI AGCT 3 cut(s) 264, 332, 574
AluI AGCT 3 cut(s) 264, 332, 574
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 2 cut(s) 71, 492
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 2 cut(s) 28, 710
ApoI RAATTY 2 cut(s) 123, 361
Asp718I GGTACC 3 cut(s) 669, 679, 689
AspS9I GGNCC 1 cut(s) 710
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 2 cut(s) 62, 283
BanI GGYRCC 3 cut(s) 669, 679, 689
BccI CCATC 2 cut(s) 8, 445
BciT130I CCWGG 1 cut(s) 358
BclI TGATCA 1 cut(s) 325
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 3 cut(s) 101, 168, 333
BlpI GCTNAGC 1 cut(s) 518
Bme1390I CCNGG 2 cut(s) 185, 358
BmgBI CACGTC 1 cut(s) 505
BmgT120I GGNCC 1 cut(s) 710
BmiI GGNNCC 4 cut(s) 569, 671, 681, 691
BmrFI CCNGG 2 cut(s) 185, 358
BmsI GCATC 3 cut(s) 422, 504, 577
Bpu1102I GCTNAGC 1 cut(s) 518
BpuEI CTTGAG 2 cut(s) 9, 37
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 214
Bse118I RCCGGY 1 cut(s) 556
Bse1I ACTGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 358
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 1 cut(s) 358
BseDI CCNNGG 1 cut(s) 480
BseMI GCAATG 1 cut(s) 358
BseNI ACTGG 1 cut(s) 411
BshFI GGCC 2 cut(s) 30, 712
BshNI GGYRCC 3 cut(s) 669, 679, 689
BsiSI CCGG 3 cut(s) 184, 215, 557
BslFI GGGAC 1 cut(s) 170
BsmAI GTCTC 1 cut(s) 216
BsmFI GGGAC 1 cut(s) 170
BsmI GAATGC 1 cut(s) 444
BsnI GGCC 2 cut(s) 30, 712
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 5 cut(s) 63, 76, 273, 325, 484
Bsp1720I GCTNAGC 1 cut(s) 518
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 2 cut(s) 61, 231
BspANI GGCC 2 cut(s) 30, 712
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 4 cut(s) 569, 671, 681, 691
BspPI GGATC 2 cut(s) 71, 492
BspT107I GGYRCC 3 cut(s) 669, 679, 689
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 556
BsrI ACTGG 1 cut(s) 411
BssAI RCCGGY 1 cut(s) 556
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 5 cut(s) 63, 76, 273, 325, 484
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 74
Bst6I CTCTTC 1 cut(s) 549
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 4 cut(s) 467, 572, 608, 660
BstDEI CTNAG 2 cut(s) 518, 575
BstDSI CCRYGG 1 cut(s) 480
BstKTI GATC 5 cut(s) 66, 79, 276, 328, 487
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 5 cut(s) 63, 76, 273, 325, 484
BstMWI GCNNNNNNNGC 1 cut(s) 410
BstNI CCWGG 1 cut(s) 358
BstNSI RCATGY 2 cut(s) 211, 662
BstSCI CCNGG 2 cut(s) 183, 356
BsuRI GGCC 2 cut(s) 30, 712
BtgI CCRYGG 1 cut(s) 480
BtrI CACGTC 1 cut(s) 505
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 2 cut(s) 404, 433
Cac8I GCNNGC 4 cut(s) 467, 572, 608, 660
Cfr10I RCCGGY 1 cut(s) 556
Cfr13I GGNCC 1 cut(s) 710
Csp6I GTAC 4 cut(s) 195, 670, 680, 690
CviAII CATG 6 cut(s) 112, 139, 208, 385, 481, 659
CviJI RGCY 8 cut(s) 30, 264, 332, 479, 509, 570, 574, 712
CviKI_1 RGCY 8 cut(s) 30, 264, 332, 479, 509, 570, 574, 712
CviQI GTAC 4 cut(s) 195, 670, 680, 690
DdeI CTNAG 2 cut(s) 518, 575
DpnI GATC 5 cut(s) 65, 78, 275, 327, 486
DpnII GATC 5 cut(s) 63, 76, 273, 325, 484
Eam1104I CTCTTC 1 cut(s) 549
EarI CTCTTC 1 cut(s) 549
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 356
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 6 cut(s) 115, 142, 211, 388, 484, 662
FaqI GGGAC 1 cut(s) 170
FatI CATG 6 cut(s) 111, 138, 207, 384, 480, 658
FbaI TGATCA 1 cut(s) 325
FspBI CTAG 3 cut(s) 101, 168, 333
HaeIII GGCC 2 cut(s) 30, 712
HapII CCGG 3 cut(s) 184, 215, 557
Hin1II CATG 6 cut(s) 115, 142, 211, 388, 484, 662
HinfI GANTC 4 cut(s) 320, 398, 632, 705
HpaII CCGG 3 cut(s) 184, 215, 557
HphI GGTGA 2 cut(s) 62, 283
Hpy188I TCNGA 7 cut(s) 130, 244, 253, 325, 450, 502, 652
Hpy188III TCNNGA 2 cut(s) 54, 215
HpyAV CCTTC 2 cut(s) 41, 368
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 6 cut(s) 413, 444, 469, 590, 658, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 410
HpyF3I CTNAG 2 cut(s) 518, 575
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 6 cut(s) 115, 142, 211, 388, 484, 662
Kpn2I TCCGGA 1 cut(s) 214
KpnI GGTACC 3 cut(s) 673, 683, 693
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 63, 76, 273, 325, 484
LmnI GCTCC 1 cut(s) 567
LweI GCATC 3 cut(s) 422, 504, 577
MaeI CTAG 3 cut(s) 101, 168, 333
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 203
MalI GATC 5 cut(s) 65, 78, 275, 327, 486
MboI GATC 5 cut(s) 63, 76, 273, 325, 484
MboII GAAGA 5 cut(s) 32, 310, 313, 536, 591
MfeI CAATTG 1 cut(s) 627
MluCI AATT 4 cut(s) 123, 361, 531, 627
MlyI GAGTC 2 cut(s) 329, 641
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 5 cut(s) 164, 277, 432, 546, 552
MroI TCCGGA 1 cut(s) 214
MslI CAYNNNNRTG 1 cut(s) 449
MspI CCGG 3 cut(s) 184, 215, 557
MspR9I CCNGG 2 cut(s) 185, 358
MunI CAATTG 1 cut(s) 627
Mva1269I GAATGC 1 cut(s) 444
MvaI CCWGG 1 cut(s) 358
MwoI GCNNNNNNNGC 1 cut(s) 410
NciI CCSGG 1 cut(s) 185
NcoI CCATGG 1 cut(s) 480
NdeII GATC 5 cut(s) 63, 76, 273, 325, 484
NlaIII CATG 6 cut(s) 115, 142, 211, 388, 484, 662
NlaIV GGNNCC 4 cut(s) 569, 671, 681, 691
NspI RCATGY 2 cut(s) 211, 662
PaeI GCATGC 1 cut(s) 662
PceI AGGCCT 1 cut(s) 30
PciI ACATGT 1 cut(s) 207
PctI GAATGC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 398, 705
PleI GAGTC 2 cut(s) 328, 640
PpsI GAGTC 2 cut(s) 328, 640
PscI ACATGT 1 cut(s) 207
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspN4I GGNNCC 4 cut(s) 569, 671, 681, 691
PspPI GGNCC 1 cut(s) 710
RsaI GTAC 4 cut(s) 196, 671, 681, 691
RsaNI GTAC 4 cut(s) 195, 670, 680, 690
RseI CAYNNNNRTG 1 cut(s) 449
Sau3AI GATC 5 cut(s) 63, 76, 273, 325, 484
Sau96I GGNCC 1 cut(s) 710
SchI GAGTC 2 cut(s) 329, 641
ScrFI CCNGG 2 cut(s) 185, 358
SetI ASST 8 cut(s) 266, 288, 334, 443, 493, 507, 576, 668
SfaNI GCATC 3 cut(s) 422, 504, 577
SmiMI CAYNNNNRTG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 24, 52
SmoI CTYRAG 2 cut(s) 24, 52
SphI GCATGC 1 cut(s) 662
Sse9I AATT 4 cut(s) 123, 361, 531, 627
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 2 cut(s) 61, 231
SspI AATATT 1 cut(s) 94
SspMI CTAG 3 cut(s) 101, 168, 333
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 183, 356
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 487, 512
TasI AATT 4 cut(s) 123, 361, 531, 627
TfiI GAWTC 2 cut(s) 398, 705
TscAI CASTG 2 cut(s) 411, 433
TspDTI ATGAA 3 cut(s) 17, 128, 387
TspRI CASTG 2 cut(s) 411, 433
XapI RAATTY 2 cut(s) 123, 361
XceI RCATGY 2 cut(s) 211, 662
XspI CTAG 3 cut(s) 101, 168, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.