Prupe.1G474300_v2.0.a1

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000509
Physical Location & Seq
Forward (+)
39405747 .. 39407250
1504 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474300.1

Sequence Viewer

Length: 627 bp
ATGACAATGCTTAACCTCTCTCTTGTTTGCTTGATATCATTCTTTACCTTCTTTTCATTTTCTTATCCTGCAACGGACACACTCACATCTTTGGACACATTGGGAGACATTCAAACCCTGGTCTCATCCGGTGGAATTTTCAAGCTTGGGCTCTTCAGCGAAAACTTTTCGGGCTATCACTATCTGGGAATTTGGTTCACAGCAGATCCAAAAAAGGTTGTCTGGGTTGACCGGGAAAATCCCATATTGGATTCATCCGGCCTCCTTCAAATTCAGGCAGGGAATTTGGTTCTCACCGACCGGCGACAAGTCCAGTTGATAGTCAATTCAGGAAGTGTCGCCGCGGTCAGTACTAATACAAGCGCAACACTTCATGACACTGGAAATTTTGTCCTTAAAGAAGTTTATACAGGTACTATTATATGGCAAAGTTTTGATCTTCCAAGTGATACATACCTACCTGGGATGAAACTTGGGTTACACACTCGTACGCCTTCAGACATGTTGAGAGACAATCAAACCCTGGTCTCATCTGGTGGACTTTTCGAGTTTGGCTTCTTCGGCGAAAGTGTTTCAGGCTACTATTTGGGAATTTGGTTCACAGCCGATCCAAGCAACGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

209

Amino Acids

22.85

Weight (kDa)

4.59

Isoelectric Point (pI)

19.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 344
AciI CCGC 2 cut(s) 342, 344
AclI AACGTT 1 cut(s) 618
AclWI GGATC 2 cut(s) 200, 602
AcsI RAATTY 6 cut(s) 135, 189, 270, 283, 385, 591
AcuI CTGAAG 2 cut(s) 139, 480
AfaI GTAC 3 cut(s) 352, 415, 490
AflIII ACRYGT 1 cut(s) 501
AgsI TTSAA 3 cut(s) 113, 142, 269
AjnI CCWGG 3 cut(s) 117, 460, 522
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
Alw26I GTCTC 4 cut(s) 99, 127, 504, 532
AlwI GGATC 2 cut(s) 200, 602
AoxI GGCC 1 cut(s) 259
ApoI RAATTY 6 cut(s) 135, 189, 270, 283, 385, 591
AspLEI GCGC 1 cut(s) 365
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 286
BanII GRGCYC 1 cut(s) 153
BciT130I CCWGG 3 cut(s) 119, 462, 524
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 4 cut(s) 99, 127, 504, 532
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
BmcAI AGTACT 1 cut(s) 352
Bme1390I CCNGG 4 cut(s) 119, 233, 462, 524
BmrFI CCNGG 4 cut(s) 119, 233, 462, 524
BpuMI CCSGG 1 cut(s) 233
BsaI GGTCTC 2 cut(s) 127, 532
BsaJI CCNNGG 4 cut(s) 117, 342, 461, 522
BsaWI WCCGGW 1 cut(s) 128
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 313, 385
BseBI CCWGG 3 cut(s) 119, 462, 524
BseDI CCNNGG 4 cut(s) 117, 342, 461, 522
BseGI GGATG 3 cut(s) 125, 254, 471
BseNI ACTGG 2 cut(s) 313, 385
Bsh1236I CGCG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 261
BsiEI CGRYCG 1 cut(s) 301
BsiSI CCGG 4 cut(s) 129, 232, 258, 301
BsiWI CGTACG 1 cut(s) 488
BsmAI GTCTC 4 cut(s) 99, 127, 504, 532
BsnI GGCC 1 cut(s) 261
Bso31I GGTCTC 2 cut(s) 127, 532
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 3 cut(s) 205, 436, 607
BspACI CCGC 2 cut(s) 342, 344
BspANI GGCC 1 cut(s) 261
BspFNI CGCG 1 cut(s) 344
BspHI TCATGA 1 cut(s) 373
BspPI GGATC 2 cut(s) 200, 602
BspQI GCTCTTC 1 cut(s) 158
BspTNI GGTCTC 2 cut(s) 127, 532
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 2 cut(s) 313, 385
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 4 cut(s) 117, 342, 461, 522
BssMI GATC 3 cut(s) 205, 436, 607
Bst2UI CCWGG 3 cut(s) 119, 462, 524
Bst6I CTCTTC 1 cut(s) 158
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 3 cut(s) 125, 254, 471
BstFNI CGCG 1 cut(s) 344
BstHHI GCGC 1 cut(s) 365
BstKTI GATC 3 cut(s) 208, 439, 610
BstMAI GTCTC 4 cut(s) 99, 127, 504, 532
BstMBI GATC 3 cut(s) 205, 436, 607
BstMCI CGRYCG 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 561
BstNI CCWGG 3 cut(s) 119, 462, 524
BstNSI RCATGY 1 cut(s) 505
BstSCI CCNGG 4 cut(s) 117, 231, 460, 522
BstUI CGCG 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuRI GGCC 1 cut(s) 261
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 3 cut(s) 125, 254, 471
BtsIMutI CAGTG 1 cut(s) 378
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 365
Cfr10I RCCGGY 1 cut(s) 300
Cfr42I CCGCGG 1 cut(s) 345
Csp6I GTAC 3 cut(s) 351, 414, 489
CviAII CATG 2 cut(s) 374, 502
CviJI RGCY 7 cut(s) 145, 151, 174, 261, 555, 579, 605
CviKI_1 RGCY 7 cut(s) 145, 151, 174, 261, 555, 579, 605
CviQI GTAC 3 cut(s) 351, 414, 489
DpnI GATC 3 cut(s) 207, 438, 609
DpnII GATC 3 cut(s) 205, 436, 607
Eam1104I CTCTTC 1 cut(s) 158
EarI CTCTTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 153
Eco31I GGTCTC 2 cut(s) 127, 532
Eco32I GATATC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 139, 480
EcoRII CCWGG 3 cut(s) 117, 460, 522
EcoRV GATATC 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 153
FaeI CATG 2 cut(s) 377, 505
FaiI YATR 7 cut(s) 245, 375, 408, 422, 424, 454, 503
FatI CATG 2 cut(s) 373, 501
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 3 cut(s) 112, 241, 478
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 342
GlaI GCGC 1 cut(s) 364
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 1 cut(s) 261
HapII CCGG 4 cut(s) 129, 232, 258, 301
HhaI GCGC 1 cut(s) 365
Hin1II CATG 2 cut(s) 377, 505
Hin6I GCGC 1 cut(s) 363
HinP1I GCGC 1 cut(s) 363
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 143
HinfI GANTC 1 cut(s) 251
HpaII CCGG 4 cut(s) 129, 232, 258, 301
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 4 cut(s) 198, 229, 539, 600
Hpy188I TCNGA 1 cut(s) 499
Hpy188III TCNNGA 2 cut(s) 330, 374
Hpy8I GTNNAC 4 cut(s) 198, 229, 539, 600
HpyAV CCTTC 3 cut(s) 58, 275, 504
HpyCH4IV ACGT 1 cut(s) 618
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 561
HpySE526I ACGT 1 cut(s) 618
Hsp92II CATG 2 cut(s) 377, 505
HspAI GCGC 1 cut(s) 363
KspI CCGCGG 1 cut(s) 345
Kzo9I GATC 3 cut(s) 205, 436, 607
LguI GCTCTTC 1 cut(s) 158
MaeII ACGT 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 477
MalI GATC 3 cut(s) 207, 438, 609
MboI GATC 3 cut(s) 205, 436, 607
MboII GAAGA 3 cut(s) 145, 431, 550
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 7 cut(s) 135, 189, 270, 283, 325, 385, 591
MnlI CCTC 2 cut(s) 26, 272
MseI TTAA 3 cut(s) 12, 396, 625
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 4 cut(s) 129, 232, 258, 301
MspR9I CCNGG 4 cut(s) 119, 233, 462, 524
MvaI CCWGG 3 cut(s) 119, 462, 524
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 1 cut(s) 561
NciI CCSGG 1 cut(s) 233
NdeII GATC 3 cut(s) 205, 436, 607
NlaIII CATG 2 cut(s) 377, 505
NspI RCATGY 1 cut(s) 505
PagI TCATGA 1 cut(s) 373
PciI ACATGT 1 cut(s) 501
PciSI GCTCTTC 1 cut(s) 158
PfeI GAWTC 1 cut(s) 251
Pfl23II CGTACG 1 cut(s) 488
PkrI GCNGC 1 cut(s) 343
PscI ACATGT 1 cut(s) 501
Psp1406I AACGTT 1 cut(s) 618
Psp6I CCWGG 3 cut(s) 117, 460, 522
PspGI CCWGG 3 cut(s) 117, 460, 522
PspLI CGTACG 1 cut(s) 488
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 3 cut(s) 352, 415, 490
RsaNI GTAC 3 cut(s) 351, 414, 489
SacII CCGCGG 1 cut(s) 345
SapI GCTCTTC 1 cut(s) 158
SaqAI TTAA 3 cut(s) 12, 396, 625
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 3 cut(s) 205, 436, 607
ScaI AGTACT 1 cut(s) 352
ScrFI CCNGG 4 cut(s) 119, 233, 462, 524
SduI GDGCHC 1 cut(s) 153
SetI ASST 8 cut(s) 18, 50, 147, 219, 415, 459, 463, 621
Sfr303I CCGCGG 1 cut(s) 345
SgrBI CCGCGG 1 cut(s) 345
Sse9I AATT 7 cut(s) 135, 189, 270, 283, 325, 385, 591
SsiI CCGC 2 cut(s) 342, 344
StyD4I CCNGG 4 cut(s) 117, 231, 460, 522
TaiI ACGT 1 cut(s) 621
TaqI TCGA 1 cut(s) 546
TasI AATT 7 cut(s) 135, 189, 270, 283, 325, 385, 591
TatI WGTACW 1 cut(s) 350
TauI GCSGC 1 cut(s) 344
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 3 cut(s) 12, 396, 625
Tru9I TTAA 3 cut(s) 12, 396, 625
TscAI CASTG 1 cut(s) 385
TspDTI ATGAA 4 cut(s) 45, 243, 362, 482
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 1 cut(s) 385
XapI RAATTY 6 cut(s) 135, 189, 270, 283, 385, 591
XceI RCATGY 1 cut(s) 505
ZrmI AGTACT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.