RchiOBHm_Chr6g0298471

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59886951 .. 59889196
2246 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26794

Sequence Viewer

Length: 930 bp
ATGGTGGATGGGAAGATTTCTTCTGTGAGTCATGCCCTGTGTGAAAATTCAACTGGGAGGTGCTTGACTTCCCTACCATCTATGTGTGAGGATGGTGATAGCTTTTCACAGATTGAGGGATCACTGCCATCTACATTTAACATTGGTGCCATTAATACGGGGCCTAGTGGTTGTGAAACATTGTGTGAGAGCAATTGTTCTTGCACTGCATTTGCTTCACTTCAGAATGATCAAGAATGCCAACTTTATTATGGGAGTAAGCAGGATCTATGGAAGACCATAGTAAAAGGGCCAGGGATTATTTACATCCGCGGTACTGCTGCTACAAATGGTGGTAAGAAGTGGAAACTCGGGTTAGCTCTCACAGTTTCTTTGGCTACCCTCTTGGGACACAAAGAAGACTCAGTAACAGAAGGCATTATCAATTTGGACCAAGAGAGTTTATTCCAAAGGGCGACTAATGCGTCACCAGTTCAGCAGAATGCAGTTAGAGGTGCAAATAACGTGGAGTTAGGCAGGCAGAAGGATCAGGATCTGCCCTTGTTTAGTATTTCTACGATACAGACTGCAACAAATTACTTTGCAGAGTCTAATAAACTCGGGGAAGGTGGATTTGGGCCTGGTAAGCTCCTAGTAGAAGGACAAGAAATTGCAGTGAAAAGACTGTCCAAAATTTCCCGCCAAGGGTCAGGGGAATTCAAAAATGAAGTCTCAGTGATTTGTAATCTCCAACACAGGAACTTGGTTAGGCTTTTGGGATTCTGCATTGAATCAGAAGAAAGTATACTAATTTACGAATACATGCCCAACAAAAGCCTGGACTTTTTCATTTTTGATTCAACCAAACGGTTACTTTTGGATTGGGGAAAGCGTGTGAACATTGTGGAAGGGATTGCTCAAGGCCTTCTATATCTTCACAAATACTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

309

Amino Acids

33.71

Weight (kDa)

5.69

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 29 - 82 5.9e-06 PAN-like domain
Pkinase PF00069 195 - 307 1.7e-13 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 198 - 307 1.6e-15 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 463
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 784
AccII CGCG 1 cut(s) 312
AciI CCGC 3 cut(s) 310, 312, 679
AclWI GGATC 4 cut(s) 127, 273, 534, 540
AcsI RAATTY 3 cut(s) 46, 672, 695
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 684
AgsI TTSAA 4 cut(s) 51, 700, 770, 840
AjnI CCWGG 3 cut(s) 292, 619, 816
AjuI GAANNNNNNNTTGG 2 cut(s) 597, 629
AluBI AGCT 3 cut(s) 102, 359, 628
AluI AGCT 3 cut(s) 102, 359, 628
Alw26I GTCTC 1 cut(s) 715
AlwI GGATC 4 cut(s) 127, 273, 534, 540
AlwNI CAGNNNCTG 1 cut(s) 535
Ama87I CYCGRG 2 cut(s) 350, 599
AoxI GGCC 4 cut(s) 161, 290, 617, 901
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 3 cut(s) 46, 672, 695
ArsI GACNNNNNNTTYG 2 cut(s) 693, 725
AseI ATTAAT 1 cut(s) 153
AspS9I GGNCC 4 cut(s) 161, 290, 430, 617
AsuHPI GGTGA 2 cut(s) 107, 459
AvaI CYCGRG 2 cut(s) 350, 599
AvaII GGWCC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 2 cut(s) 768, 800
BbsI GAAGAC 2 cut(s) 281, 405
BbvI GCAGC 1 cut(s) 307
BccI CCATC 4 cut(s) 2, 85, 86, 136
BciT130I CCWGG 3 cut(s) 294, 621, 818
BclI TGATCA 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 715
BfaI CTAG 2 cut(s) 165, 632
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 3 cut(s) 294, 621, 818
Bme18I GGWCC 1 cut(s) 430
BmeT110I CYCGRG 2 cut(s) 350, 599
BmgT120I GGNCC 4 cut(s) 161, 290, 430, 617
BmiI GGNNCC 2 cut(s) 148, 162
BmrFI CCNGG 3 cut(s) 294, 621, 818
BmrI ACTGGG 1 cut(s) 63
BmuI ACTGGG 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 281, 405
BpuEI CTTGAG 1 cut(s) 882
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 293, 310, 682
BsaXI ACNNNNNCTCC 1 cut(s) 908
Bsc4I CCNNNNNNNGG 1 cut(s) 684
Bse1I ACTGG 2 cut(s) 58, 470
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 3 cut(s) 294, 621, 818
BseDI CCNNGG 3 cut(s) 293, 310, 682
BseGI GGATG 3 cut(s) 13, 97, 306
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 684
BseMII CTCAG 2 cut(s) 417, 726
BseNI ACTGG 2 cut(s) 58, 470
BseXI GCAGC 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 4 cut(s) 163, 292, 619, 903
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 2 cut(s) 350, 599
BslFI GGGAC 1 cut(s) 402
BslI CCNNNNNNNGG 1 cut(s) 684
BsmAI GTCTC 1 cut(s) 715
BsmFI GGGAC 1 cut(s) 402
BsmI GAATGC 2 cut(s) 242, 487
BsnI GGCC 4 cut(s) 163, 292, 619, 903
BsoBI CYCGRG 2 cut(s) 350, 599
Bsp143I GATC 5 cut(s) 119, 229, 265, 526, 532
BspACI CCGC 3 cut(s) 310, 312, 679
BspANI GGCC 4 cut(s) 163, 292, 619, 903
BspCNI CTCAG 2 cut(s) 416, 725
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 148, 162
BspPI GGATC 4 cut(s) 127, 273, 534, 540
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 2 cut(s) 58, 470
BssECI CCNNGG 3 cut(s) 293, 310, 682
BssMI GATC 5 cut(s) 119, 229, 265, 526, 532
BssNAI GTATAC 1 cut(s) 785
BssT1I CCWWGG 1 cut(s) 682
Bst1107I GTATAC 1 cut(s) 785
Bst2UI CCWGG 3 cut(s) 294, 621, 818
Bst4CI ACNGT 3 cut(s) 367, 666, 849
BstC8I GCNNGC 1 cut(s) 518
BstDEI CTNAG 2 cut(s) 403, 712
BstDSI CCRYGG 1 cut(s) 310
BstF5I GGATG 3 cut(s) 13, 97, 306
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 5 cut(s) 122, 232, 268, 529, 535
BstMAI GTCTC 1 cut(s) 715
BstMBI GATC 5 cut(s) 119, 229, 265, 526, 532
BstMWI GCNNNNNNNGC 2 cut(s) 461, 625
BstNI CCWGG 3 cut(s) 294, 621, 818
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 3 cut(s) 292, 619, 816
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 307
BstV2I GAAGAC 2 cut(s) 281, 405
BstX2I RGATCY 2 cut(s) 265, 532
BstYI RGATCY 2 cut(s) 265, 532
BstZ17I GTATAC 1 cut(s) 785
BsuRI GGCC 4 cut(s) 163, 292, 619, 903
BtgI CCRYGG 1 cut(s) 310
BtsCI GGATG 3 cut(s) 13, 97, 306
BtsI GCAGTG 3 cut(s) 122, 204, 660
BtsIMutI CAGTG 4 cut(s) 122, 204, 660, 720
Cac8I GCNNGC 1 cut(s) 518
CaiI CAGNNNCTG 1 cut(s) 535
Cfr13I GGNCC 4 cut(s) 161, 290, 430, 617
Cfr42I CCGCGG 1 cut(s) 313
CseI GACGC 1 cut(s) 453
Csp6I GTAC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 2 cut(s) 32, 802
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 2 cut(s) 403, 712
DpnI GATC 5 cut(s) 121, 231, 267, 528, 534
DpnII GATC 5 cut(s) 119, 229, 265, 526, 532
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 682
Eco147I AGGCCT 1 cut(s) 903
Eco47I GGWCC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 350, 599
EcoO109I RGGNCCY 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 695
EcoRII CCWGG 3 cut(s) 292, 619, 816
EcoT14I CCWWGG 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 682
FaeI CATG 2 cut(s) 35, 805
FaiI YATR 8 cut(s) 33, 83, 252, 271, 281, 785, 803, 910
FaqI GGGAC 1 cut(s) 402
FatI CATG 2 cut(s) 31, 801
FauI CCCGC 1 cut(s) 686
FbaI TGATCA 1 cut(s) 229
FblI GTMKAC 1 cut(s) 784
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 3 cut(s) 20, 104, 293
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 165, 632
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 4 cut(s) 163, 292, 619, 903
HgaI GACGC 1 cut(s) 453
Hin1II CATG 2 cut(s) 35, 805
HinfI GANTC 6 cut(s) 28, 401, 587, 759, 770, 836
HphI GGTGA 2 cut(s) 107, 459
Hpy166II GTNNAC 2 cut(s) 785, 877
Hpy188I TCNGA 2 cut(s) 225, 775
Hpy188III TCNNGA 3 cut(s) 233, 530, 927
Hpy8I GTNNAC 2 cut(s) 785, 877
HpyAV CCTTC 6 cut(s) 407, 517, 599, 632, 881, 914
HpyCH4III ACNGT 3 cut(s) 367, 666, 849
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 8 cut(s) 204, 209, 485, 497, 569, 584, 653, 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 625
HpyF3I CTNAG 2 cut(s) 403, 712
HpySE526I ACGT 1 cut(s) 504
Hsp92II CATG 2 cut(s) 35, 805
Ksp22I TGATCA 1 cut(s) 229
KspI CCGCGG 1 cut(s) 313
Kzo9I GATC 5 cut(s) 119, 229, 265, 526, 532
LmnI GCTCC 1 cut(s) 633
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 2 cut(s) 165, 632
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 406, 465, 849
MalI GATC 5 cut(s) 121, 231, 267, 528, 534
MboI GATC 5 cut(s) 119, 229, 265, 526, 532
MboII GAAGA 6 cut(s) 12, 25, 286, 410, 788, 905
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 2 cut(s) 265, 532
MluCI AATT 8 cut(s) 46, 193, 424, 574, 648, 672, 695, 789
MlyI GAGTC 3 cut(s) 37, 395, 596
MmeI TCCRAC 1 cut(s) 754
MnlI CCTC 5 cut(s) 51, 82, 109, 392, 485
MseI TTAA 2 cut(s) 138, 153
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 3 cut(s) 294, 621, 818
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 2 cut(s) 242, 487
MvaI CCWGG 3 cut(s) 294, 621, 818
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 461, 625
NdeII GATC 5 cut(s) 119, 229, 265, 526, 532
NlaIII CATG 2 cut(s) 35, 805
NlaIV GGNNCC 2 cut(s) 148, 162
NmuCI GTSAC 1 cut(s) 465
NspI RCATGY 1 cut(s) 805
PceI AGGCCT 1 cut(s) 903
PctI GAATGC 2 cut(s) 242, 487
PfeI GAWTC 3 cut(s) 759, 770, 836
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 3 cut(s) 36, 395, 595
PpsI GAGTC 3 cut(s) 36, 395, 595
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 3 cut(s) 292, 619, 816
PspGI CCWGG 3 cut(s) 292, 619, 816
PspN4I GGNNCC 2 cut(s) 148, 162
PspPI GGNCC 4 cut(s) 161, 290, 430, 617
PstNI CAGNNNCTG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 265, 532
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 82
SacII CCGCGG 1 cut(s) 313
SaqAI TTAA 2 cut(s) 138, 153
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 5 cut(s) 119, 229, 265, 526, 532
Sau96I GGNCC 4 cut(s) 161, 290, 430, 617
SchI GAGTC 3 cut(s) 37, 395, 596
ScrFI CCNGG 3 cut(s) 294, 621, 818
SetI ASST 7 cut(s) 62, 104, 361, 496, 507, 610, 630
Sfr303I CCGCGG 1 cut(s) 313
SgrBI CCGCGG 1 cut(s) 313
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 897
SmoI CTYRAG 1 cut(s) 897
Sse9I AATT 8 cut(s) 46, 193, 424, 574, 648, 672, 695, 789
SseBI AGGCCT 1 cut(s) 903
SsiI CCGC 3 cut(s) 310, 312, 679
SspMI CTAG 2 cut(s) 165, 632
StuI AGGCCT 1 cut(s) 903
StyD4I CCNGG 3 cut(s) 292, 619, 816
StyI CCWWGG 1 cut(s) 682
TaaI ACNGT 3 cut(s) 367, 666, 849
TaiI ACGT 1 cut(s) 507
TasI AATT 8 cut(s) 46, 193, 424, 574, 648, 672, 695, 789
TfiI GAWTC 3 cut(s) 759, 770, 836
Tru1I TTAA 2 cut(s) 138, 153
Tru9I TTAA 2 cut(s) 138, 153
TscAI CASTG 4 cut(s) 129, 211, 660, 720
TseFI GTSAC 1 cut(s) 465
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 465
TspDTI ATGAA 2 cut(s) 720, 817
TspRI CASTG 4 cut(s) 129, 211, 660, 720
VpaK11BI GGWCC 1 cut(s) 430
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 3 cut(s) 46, 672, 695
XceI RCATGY 1 cut(s) 805
XcmI CCANNNNNNNNNTGG 2 cut(s) 248, 814
XmiI GTMKAC 1 cut(s) 784
XspI CTAG 2 cut(s) 165, 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.