Rh6AG392000

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000509
Physical Location & Seq
Reverse (-)
59064280 .. 59065347
1068 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG392000.1

Sequence Viewer

Length: 873 bp
ATGGTCAGCATCAAAAGAGAATTTCTTCATATTGTTTGTTTGATATCATCCTATACTTTCTTTTCATTTTCATCTCATGCATTAACTGATACACTTACACCTGAAGAAACACTAACAAACAATCAAACATTGGTTTCAGCTGGTAGGATTTTTGAGCTTGGCTTCTTCAGTGATGACTTTTCAGGCAATCATTATATTGGCATTTGGTTCAAAGCCGATAAGAACAAGGTTGTCTGGGTTGGTAACCGTGAAATTCCCATATCAGATTCCTCAGGTATTCTTCAAATACGATCTGGGAATCTGGTTTTCATGGACAGACGTCAAGTTCCTTGGCTACTCAATTCTGGAGGTGTTGCCACGGCCATAAACACAACTGCAACACTTCTTGATTCAGGAAATTTTGTCCTTAAAGAAGAATATACAGGTACTGTTCTATGGCAAAGTTTTGATAATCCAACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCTGCACTAAACACTAACCAACCAAGCTTTCGCCTTTTTGTTTCTTGGGTAAGCCCCCAAAGCCCTACTCGTGGCCTTTTCACCTTATTAGCCATGGATAGGATCAACTTTACAAAGATTCAGGTTTGGCGAGGAGATAAAGTTCGAATGGATATTGGGTTTTGGGATGGACATAACCTGCGGTTTATTTTTGACAACTCAACAAGTGAAAATGACTACAATTTTAGTCACCATTCCACTGCAGATGAAGTCTACTTTACTTTTAGTGGGAATAAGAATTATGACCTCATGTGGTTTGTGATGGCTTCCACGCGCGGGAAAGCTAGATCAGTATTATATGGTGGATGGGAAGATTTCTTCTGTGAGTCATGCCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

290

Amino Acids

33.05

Weight (kDa)

5.68

Isoelectric Point (pI)

35.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 170 5.5e-27 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 678
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 805, 807
AciI CCGC 2 cut(s) 673, 807
AclWI GGATC 1 cut(s) 602
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 3 cut(s) 20, 252, 397
AcuI CTGAAG 2 cut(s) 123, 151
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 563, 591, 807
AgsI TTSAA 2 cut(s) 211, 284
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AloI GAACNNNNNNTCC 2 cut(s) 618, 650
AluBI AGCT 4 cut(s) 140, 157, 519, 815
AluI AGCT 4 cut(s) 140, 157, 519, 815
AlwI GGATC 1 cut(s) 602
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 2 cut(s) 360, 565
ApoI RAATTY 3 cut(s) 20, 252, 397
Asp700I GAANNNNTTC 1 cut(s) 24
AspLEI GCGC 1 cut(s) 807
AsuHPI GGTGA 2 cut(s) 565, 713
AsuII TTCGAA 1 cut(s) 637
AxyI CCTNAGG 1 cut(s) 271
BauI CACGAG 1 cut(s) 561
BccI CCATC 3 cut(s) 653, 787, 831
BceAI ACGGC 1 cut(s) 375
BciT130I CCWGG 1 cut(s) 474
BfaI CTAG 1 cut(s) 816
BfmI CTRYAG 1 cut(s) 732
BfuAI ACCTGC 1 cut(s) 678
Bme1390I CCNGG 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 366
Bpu14I TTCGAA 1 cut(s) 637
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 4 cut(s) 329, 357, 473, 585
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 563, 591, 807
Bse21I CCTNAGG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 4 cut(s) 329, 357, 473, 585
BseGI GGATG 4 cut(s) 47, 483, 664, 842
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 3 cut(s) 563, 591, 807
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 639
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 2 cut(s) 805, 807
BshFI GGCC 2 cut(s) 362, 567
BslI CCNNNNNNNGG 3 cut(s) 563, 591, 807
BsnI GGCC 2 cut(s) 362, 567
Bsp119I TTCGAA 1 cut(s) 637
Bsp143I GATC 3 cut(s) 290, 594, 818
Bsp19I CCATGG 1 cut(s) 585
BspACI CCGC 2 cut(s) 673, 807
BspANI GGCC 2 cut(s) 362, 567
BspCNI CTCAG 1 cut(s) 284
BspFNI CGCG 2 cut(s) 805, 807
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 678
BspPI GGATC 1 cut(s) 602
BspT104I TTCGAA 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 329, 357, 473, 585
BssMI GATC 3 cut(s) 290, 594, 818
BssNI GRCGYC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 2 cut(s) 329, 585
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 248, 430
BstACI GRCGYC 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 637
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 2 cut(s) 357, 585
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 4 cut(s) 47, 483, 664, 842
BstFNI CGCG 2 cut(s) 805, 807
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 3 cut(s) 293, 597, 821
BstMBI GATC 3 cut(s) 290, 594, 818
BstMWI GCNNNNNNNGC 1 cut(s) 552
BstNI CCWGG 1 cut(s) 474
BstPAI GACNNNNGTC 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 732
BstUI CGCG 2 cut(s) 805, 807
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 362, 567
BtgI CCRYGG 2 cut(s) 357, 585
BtsCI GGATG 4 cut(s) 47, 483, 664, 842
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 175, 729
BveI ACCTGC 1 cut(s) 678
CaiI CAGNNNCTG 1 cut(s) 428
CfoI GCGC 1 cut(s) 807
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 77, 310, 586, 781, 861
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 271
DpnI GATC 3 cut(s) 292, 596, 820
DpnII GATC 3 cut(s) 290, 594, 818
EaeI YGGCCR 1 cut(s) 360
Eco130I CCWWGG 2 cut(s) 329, 585
Eco32I GATATC 1 cut(s) 45
Eco57I CTGAAG 2 cut(s) 123, 151
Eco81I CCTNAGG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 2 cut(s) 329, 585
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 329, 585
FaeI CATG 5 cut(s) 80, 313, 589, 784, 864
FatI CATG 5 cut(s) 76, 309, 585, 780, 860
FauI CCCGC 1 cut(s) 800
FblI GTMKAC 1 cut(s) 744
FokI GGATG 4 cut(s) 34, 490, 671, 849
FspBI CTAG 1 cut(s) 816
GlaI GCGC 1 cut(s) 806
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 2 cut(s) 362, 567
HhaI GCGC 1 cut(s) 807
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 5 cut(s) 80, 313, 589, 784, 864
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 5 cut(s) 266, 298, 389, 610, 857
HphI GGTGA 2 cut(s) 565, 713
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 345, 386, 393
Hpy8I GTNNAC 1 cut(s) 745
HpyCH4III ACNGT 2 cut(s) 248, 430
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 80, 377, 497, 734
HpyF10VI GCNNNNNNNGC 1 cut(s) 552
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 5 cut(s) 80, 313, 589, 784, 864
HspAI GCGC 1 cut(s) 805
Kzo9I GATC 3 cut(s) 290, 594, 818
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 816
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 242, 719
MalI GATC 3 cut(s) 292, 596, 820
MboI GATC 3 cut(s) 290, 594, 818
MboII GAAGA 8 cut(s) 17, 116, 157, 272, 425, 461, 841, 854
MluCI AATT 6 cut(s) 20, 252, 340, 397, 712, 769
MlyI GAGTC 1 cut(s) 866
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 4 cut(s) 280, 341, 617, 788
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 24
MseI TTAA 2 cut(s) 83, 408
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MvnI CGCG 2 cut(s) 805, 807
MwoI GCNNNNNNNGC 1 cut(s) 552
NcoI CCATGG 1 cut(s) 585
NdeII GATC 3 cut(s) 290, 594, 818
NlaIII CATG 5 cut(s) 80, 313, 589, 784, 864
NmuCI GTSAC 1 cut(s) 719
NsiI ATGCAT 1 cut(s) 82
NspV TTCGAA 1 cut(s) 637
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 266, 298, 389, 610
PleI GAGTC 1 cut(s) 865
PpsI GAGTC 1 cut(s) 865
PshAI GACNNNNGTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 472
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 472
PstI CTGCAG 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 2 cut(s) 83, 408
Sau3AI GATC 3 cut(s) 290, 594, 818
SchI GAGTC 1 cut(s) 866
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 732
SfuI TTCGAA 1 cut(s) 637
Sse9I AATT 6 cut(s) 20, 252, 340, 397, 712, 769
SsiI CCGC 2 cut(s) 673, 807
SspMI CTAG 1 cut(s) 816
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 2 cut(s) 329, 585
TaaI ACNGT 2 cut(s) 248, 430
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 637
TasI AATT 6 cut(s) 20, 252, 340, 397, 712, 769
TfiI GAWTC 4 cut(s) 266, 298, 389, 610
Tru1I TTAA 2 cut(s) 83, 408
Tru9I TTAA 2 cut(s) 83, 408
TscAI CASTG 2 cut(s) 175, 736
TseFI GTSAC 1 cut(s) 719
Tsp45I GTSAC 1 cut(s) 719
TspDTI ATGAA 6 cut(s) 17, 54, 60, 298, 494, 753
TspRI CASTG 2 cut(s) 175, 736
XapI RAATTY 3 cut(s) 20, 252, 397
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 816
ZraI GACGTC 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.