Rroxscaffold_7G00169620

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000509
Physical Location & Seq
Forward (+)
10215502 .. 10218870
3369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169620.1

Sequence Viewer

Length: 1326 bp
ATGGTGGATGGGAAGATTTCTTCTGTGAGTCATGCCCTGTGTGAAAATTCAACTGGGAGGTGCTTGACTTCCCTACCATCTATGTGTGAGGATGGTGATAGCTTTTCACAGGTTGAGGGATCACTGCCATCTACATTTAACATTGGTGCCATTAATACGGGGCCTAGTGGTTGTGAAACATTGTGTGAGAGCAATTGTTCTTGCACTGCATTTGCTTCACTTCAGAATGATCAAGAATGCCAACTTTATTATGGGAGTAAGCAGGATCTATGGAGGACCATAGTAAAAGGGCCAGGGATTATTTACATCTGCAGTACTGCTGCTACAAATGGTGGTAAGAAGTGGAAACTCGGGTTAGCTCTCACAGTTTCTTTGGCTACCCTCTTGGTTCTTATTCCTTTATCCTTATGCCGCTATCTGCTTTGGAGAAAGGGACACAAAGAAGATTCAGTAACAGAAGGCATTATCAATTTGGACCAAGAGAGTTTATTCCAAAGGGCGACTAATGCGTCACCAGTTCAGCGGAATGCAGTTAGAGGTGCGAATAACATGGAGTTAGGGAGGCAGAAGGATCAAGATCGACCATTGTTTAGTATTTCTACGATACAGACTGCAACAAATTACTTTGCAGAGTCTAATAAACTCGGGGAAGGTGGATTTGGGCCTGTCTATAAGGGTAAGCTCCTAGGAGAAGGACAAGAAATTGCAGTGAAAAGACTGTCCAAAATTTCCCGCCAAGGGTCAGGGGAATTCAAAAATGAAGTCTCAGTGATTTGTAAGCTCCAACACAGGAACTTGGTTAGGCTTTTGGGATGCTGCATTGAAGCAGAAGAAAGTATACTAATTTACGAATACATGCCCAACAAAAGCCTGGACTTTTTCATTTTTGATTCAACCAAACGGTTACTTTTGGATTGGGGAAAGCGTGTGAACATTGTGGAAGGGATTGCTCAAGGCCTTCTATATCTTCACAAATACTCCCGATTAAGGATCATTCACCGTGATTTAAAGTCCAGTAATATCCTGTTGGACAGTGACATGAACCCAAAGATTTCTGATTTTGGCATGGCAAGGATTTTGGGGGACAATGACACTAGAGGCAAAACAAACCGGGTTGTTGGTACATTTGGTTACATGTCACCGGAGTATGCCATGGACAGCCTCTTTTCTGAAAAATCCGATGTGTTTAGCTTTGGGGTGATCCTATTAGAGATTATTACTGGCAAGAAGAATATTGCCTTCTTTGAAGCTGATCATTCTCTGAACTTACTGGGCAAAGTAAGCAACTCTTGTAAATCAGGCTTGGACTTTGTGGAAAGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

441

Amino Acids

48.74

Weight (kDa)

8.11

Isoelectric Point (pI)

42.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 210 - 411 1.6e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 212 - 417 1e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 838
AciI CCGC 3 cut(s) 412, 523, 733
AclWI GGATC 5 cut(s) 127, 273, 579, 998, 1195
AcsI RAATTY 3 cut(s) 46, 726, 749
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 316, 1123
AfiI CCNNNNNNNGG 2 cut(s) 738, 987
AflIII ACRYGT 1 cut(s) 1134
AgsI TTSAA 5 cut(s) 51, 754, 824, 894, 1247
AjnI CCWGG 2 cut(s) 292, 870
AjuI GAANNNNNNNTTGG 2 cut(s) 642, 674
AluBI AGCT 6 cut(s) 102, 359, 682, 781, 1191, 1250
AluI AGCT 6 cut(s) 102, 359, 682, 781, 1191, 1250
Alw26I GTCTC 1 cut(s) 769
AlwI GGATC 5 cut(s) 127, 273, 579, 998, 1195
Ama87I CYCGRG 2 cut(s) 350, 644
AoxI GGCC 4 cut(s) 161, 290, 662, 955
ApeKI GCWGC 2 cut(s) 320, 816
ApoI RAATTY 3 cut(s) 46, 726, 749
ArsI GACNNNNNNTTYG 2 cut(s) 747, 779
AseI ATTAAT 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 685
AspS9I GGNCC 5 cut(s) 161, 276, 290, 475, 662
AsuC2I CCSGG 1 cut(s) 1112
AsuHPI GGTGA 5 cut(s) 107, 504, 989, 1131, 1210
AvaI CYCGRG 2 cut(s) 350, 644
AvaII GGWCC 2 cut(s) 276, 475
AvrII CCTAGG 1 cut(s) 685
BanI GGYRCC 1 cut(s) 146
BarI GAAGNNNNNNTAC 2 cut(s) 822, 854
BbvI GCAGC 2 cut(s) 307, 803
BccI CCATC 4 cut(s) 2, 85, 86, 136
BciT130I CCWGG 2 cut(s) 294, 872
BclI TGATCA 2 cut(s) 229, 1252
BcnI CCSGG 1 cut(s) 1112
BcoDI GTCTC 1 cut(s) 769
BfaI CTAG 3 cut(s) 165, 686, 1095
BfmI CTRYAG 1 cut(s) 310
BisI GCNGC 3 cut(s) 321, 412, 817
BlnI CCTAGG 1 cut(s) 685
BlsI GCNGC 3 cut(s) 322, 413, 818
BmcAI AGTACT 1 cut(s) 316
Bme1390I CCNGG 3 cut(s) 294, 872, 1112
Bme18I GGWCC 2 cut(s) 276, 475
BmeT110I CYCGRG 2 cut(s) 350, 644
BmgT120I GGNCC 5 cut(s) 161, 276, 290, 475, 662
BmiI GGNNCC 2 cut(s) 148, 162
BmrFI CCNGG 3 cut(s) 294, 872, 1112
BmrI ACTGGG 2 cut(s) 63, 1280
BmsI GCATC 1 cut(s) 803
BmuI ACTGGG 2 cut(s) 63, 1280
BpuEI CTTGAG 1 cut(s) 936
BpuMI CCSGG 1 cut(s) 1112
BsaBI GATNNNNATC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 293, 685, 736, 1152
BsaWI WCCGGW 1 cut(s) 1141
BsaXI ACNNNNNCTCC 2 cut(s) 962, 992
Bsc4I CCNNNNNNNGG 2 cut(s) 738, 987
Bse1I ACTGG 5 cut(s) 58, 515, 1014, 1225, 1275
Bse8I GATNNNNATC 1 cut(s) 576
BseBI CCWGG 2 cut(s) 294, 872
BseDI CCNNGG 4 cut(s) 293, 685, 736, 1152
BseGI GGATG 3 cut(s) 13, 97, 818
BseJI GATNNNNATC 1 cut(s) 576
BseLI CCNNNNNNNGG 2 cut(s) 738, 987
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 5 cut(s) 58, 515, 1014, 1225, 1275
BseXI GCAGC 2 cut(s) 307, 803
BshFI GGCC 4 cut(s) 163, 292, 664, 957
BshNI GGYRCC 1 cut(s) 146
BsiHKCI CYCGRG 2 cut(s) 350, 644
BsiSI CCGG 2 cut(s) 1111, 1142
BslFI GGGAC 2 cut(s) 447, 1097
BslI CCNNNNNNNGG 2 cut(s) 738, 987
BsmAI GTCTC 1 cut(s) 769
BsmFI GGGAC 2 cut(s) 447, 1097
BsmI GAATGC 2 cut(s) 242, 532
BsnI GGCC 4 cut(s) 163, 292, 664, 957
BsoBI CYCGRG 2 cut(s) 350, 644
Bsp143I GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
Bsp19I CCATGG 1 cut(s) 1152
BspACI CCGC 3 cut(s) 412, 523, 733
BspANI GGCC 4 cut(s) 163, 292, 664, 957
BspCNI CTCAG 1 cut(s) 779
BspLI GGNNCC 2 cut(s) 148, 162
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 5 cut(s) 127, 273, 579, 998, 1195
BspT107I GGYRCC 1 cut(s) 146
BsrI ACTGG 5 cut(s) 58, 515, 1014, 1225, 1275
BssECI CCNNGG 4 cut(s) 293, 685, 736, 1152
BssMI GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
BssNAI GTATAC 1 cut(s) 839
BssT1I CCWWGG 3 cut(s) 685, 736, 1152
Bst1107I GTATAC 1 cut(s) 839
Bst2UI CCWGG 2 cut(s) 294, 872
Bst4CI ACNGT 5 cut(s) 367, 720, 903, 1001, 1034
BstDEI CTNAG 1 cut(s) 766
BstDSI CCRYGG 1 cut(s) 1152
BstF5I GGATG 3 cut(s) 13, 97, 818
BstKTI GATC 8 cut(s) 122, 232, 268, 574, 580, 993, 1203, 1255
BstMAI GTCTC 1 cut(s) 769
BstMBI GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
BstMWI GCNNNNNNNGC 2 cut(s) 506, 1281
BstNI CCWGG 2 cut(s) 294, 872
BstNSI RCATGY 2 cut(s) 859, 1138
BstSCI CCNGG 3 cut(s) 292, 870, 1110
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 307, 803
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZ17I GTATAC 1 cut(s) 839
BsuRI GGCC 4 cut(s) 163, 292, 664, 957
BtgI CCRYGG 1 cut(s) 1152
BtsCI GGATG 3 cut(s) 13, 97, 818
BtsI GCAGTG 3 cut(s) 122, 204, 714
BtsIMutI CAGTG 5 cut(s) 122, 204, 714, 774, 1039
Cfr13I GGNCC 5 cut(s) 161, 276, 290, 475, 662
CseI GACGC 1 cut(s) 498
Csp6I GTAC 2 cut(s) 315, 1122
CviAII CATG 7 cut(s) 32, 550, 856, 1039, 1066, 1135, 1153
CviQI GTAC 2 cut(s) 315, 1122
DdeI CTNAG 1 cut(s) 766
DpnI GATC 8 cut(s) 121, 231, 267, 573, 579, 992, 1202, 1254
DpnII GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
DraI TTTAAA 1 cut(s) 1008
DrdI GACNNNNNNGTC 1 cut(s) 508
DseDI GACNNNNNNGTC 1 cut(s) 508
Eco130I CCWWGG 3 cut(s) 685, 736, 1152
Eco147I AGGCCT 1 cut(s) 957
Eco47I GGWCC 2 cut(s) 276, 475
Eco57I CTGAAG 1 cut(s) 206
Eco88I CYCGRG 2 cut(s) 350, 644
EcoO109I RGGNCCY 1 cut(s) 161
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 292, 870
EcoT14I CCWWGG 3 cut(s) 685, 736, 1152
ErhI CCWWGG 3 cut(s) 685, 736, 1152
FaeI CATG 7 cut(s) 35, 553, 859, 1042, 1069, 1138, 1156
FalI AAGNNNNNCTT 2 cut(s) 1273, 1305
FaqI GGGAC 2 cut(s) 447, 1097
FatI CATG 7 cut(s) 31, 549, 855, 1038, 1065, 1134, 1152
FauI CCCGC 1 cut(s) 740
FbaI TGATCA 2 cut(s) 229, 1252
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 3 cut(s) 321, 412, 817
FokI GGATG 3 cut(s) 20, 104, 825
Fsp4HI GCNGC 3 cut(s) 321, 412, 817
FspBI CTAG 3 cut(s) 165, 686, 1095
GluI GCNGC 3 cut(s) 321, 412, 817
HaeIII GGCC 4 cut(s) 163, 292, 664, 957
HapII CCGG 2 cut(s) 1111, 1142
HgaI GACGC 1 cut(s) 498
Hin1II CATG 7 cut(s) 35, 553, 859, 1042, 1069, 1138, 1156
HinfI GANTC 4 cut(s) 28, 446, 632, 890
HpaII CCGG 2 cut(s) 1111, 1142
HphI GGTGA 5 cut(s) 107, 504, 989, 1131, 1210
Hpy166II GTNNAC 2 cut(s) 839, 931
Hpy188I TCNGA 5 cut(s) 225, 1057, 1171, 1180, 1263
Hpy188III TCNNGA 3 cut(s) 233, 575, 981
Hpy8I GTNNAC 2 cut(s) 839, 931
HpyAV CCTTC 8 cut(s) 452, 562, 644, 686, 935, 968, 1249, 1314
HpyCH4III ACNGT 5 cut(s) 367, 720, 903, 1001, 1034
HpyCH4V TGCA 8 cut(s) 204, 209, 312, 530, 614, 629, 707, 819
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 1281
HpyF3I CTNAG 1 cut(s) 766
Hsp92II CATG 7 cut(s) 35, 553, 859, 1042, 1069, 1138, 1156
Ksp22I TGATCA 2 cut(s) 229, 1252
Kzo9I GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
LmnI GCTCC 2 cut(s) 687, 786
Lsp1109I GCAGC 2 cut(s) 307, 803
LweI GCATC 1 cut(s) 803
MaeI CTAG 3 cut(s) 165, 686, 1095
MaeIII GTNAC 6 cut(s) 451, 510, 903, 1034, 1130, 1137
MalI GATC 8 cut(s) 121, 231, 267, 573, 579, 992, 1202, 1254
MboI GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
MboII GAAGA 6 cut(s) 12, 25, 455, 842, 959, 1240
MfeI CAATTG 1 cut(s) 193
MflI RGATCY 1 cut(s) 265
MluCI AATT 8 cut(s) 46, 193, 469, 619, 702, 726, 749, 843
MlyI GAGTC 2 cut(s) 37, 641
MmeI TCCRAC 2 cut(s) 808, 1008
MnlI CCTC 9 cut(s) 51, 82, 109, 267, 392, 530, 555, 1091, 1172
MseI TTAA 4 cut(s) 138, 153, 986, 1007
MslI CAYNNNNRTG 1 cut(s) 82
MspA1I CMGCKG 1 cut(s) 523
MspI CCGG 2 cut(s) 1111, 1142
MspR9I CCNGG 3 cut(s) 294, 872, 1112
MunI CAATTG 1 cut(s) 193
Mva1269I GAATGC 2 cut(s) 242, 532
MvaI CCWGG 2 cut(s) 294, 872
MwoI GCNNNNNNNGC 2 cut(s) 506, 1281
NciI CCSGG 1 cut(s) 1112
NcoI CCATGG 1 cut(s) 1152
NdeII GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
NlaIII CATG 7 cut(s) 35, 553, 859, 1042, 1069, 1138, 1156
NlaIV GGNNCC 2 cut(s) 148, 162
NmuCI GTSAC 3 cut(s) 510, 1034, 1137
NspI RCATGY 2 cut(s) 859, 1138
PceI AGGCCT 1 cut(s) 957
PciI ACATGT 1 cut(s) 1134
PctI GAATGC 2 cut(s) 242, 532
PfeI GAWTC 2 cut(s) 446, 890
PkrI GCNGC 3 cut(s) 322, 413, 818
PleI GAGTC 2 cut(s) 36, 640
PpsI GAGTC 2 cut(s) 36, 640
PscI ACATGT 1 cut(s) 1134
PshBI ATTAAT 1 cut(s) 153
Psp6I CCWGG 2 cut(s) 292, 870
PspGI CCWGG 2 cut(s) 292, 870
PspN4I GGNNCC 2 cut(s) 148, 162
PspPI GGNCC 5 cut(s) 161, 276, 290, 475, 662
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 1 cut(s) 265
RsaI GTAC 2 cut(s) 316, 1123
RsaNI GTAC 2 cut(s) 315, 1122
RseI CAYNNNNRTG 1 cut(s) 82
SaqAI TTAA 4 cut(s) 138, 153, 986, 1007
SatI GCNGC 3 cut(s) 321, 412, 817
Sau3AI GATC 8 cut(s) 119, 229, 265, 571, 577, 990, 1200, 1252
Sau96I GGNCC 5 cut(s) 161, 276, 290, 475, 662
ScaI AGTACT 1 cut(s) 316
SchI GAGTC 2 cut(s) 37, 641
ScrFI CCNGG 3 cut(s) 294, 872, 1112
SfaNI GCATC 1 cut(s) 803
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 2 cut(s) 276, 475
SmiMI CAYNNNNRTG 1 cut(s) 82
SmlI CTYRAG 1 cut(s) 951
SmoI CTYRAG 1 cut(s) 951
Sse9I AATT 8 cut(s) 46, 193, 469, 619, 702, 726, 749, 843
SseBI AGGCCT 1 cut(s) 957
SsiI CCGC 3 cut(s) 412, 523, 733
SspI AATATT 1 cut(s) 1234
SspMI CTAG 3 cut(s) 165, 686, 1095
StuI AGGCCT 1 cut(s) 957
StyD4I CCNGG 3 cut(s) 292, 870, 1110
StyI CCWWGG 3 cut(s) 685, 736, 1152
TaaI ACNGT 5 cut(s) 367, 720, 903, 1001, 1034
TaqI TCGA 1 cut(s) 580
TasI AATT 8 cut(s) 46, 193, 469, 619, 702, 726, 749, 843
TatI WGTACW 1 cut(s) 314
TauI GCSGC 1 cut(s) 414
TfiI GAWTC 2 cut(s) 446, 890
Tru1I TTAA 4 cut(s) 138, 153, 986, 1007
Tru9I TTAA 4 cut(s) 138, 153, 986, 1007
TscAI CASTG 5 cut(s) 129, 211, 714, 774, 1039
TseFI GTSAC 3 cut(s) 510, 1034, 1137
TseI GCWGC 2 cut(s) 320, 816
Tsp45I GTSAC 3 cut(s) 510, 1034, 1137
TspDTI ATGAA 3 cut(s) 774, 871, 1055
TspRI CASTG 5 cut(s) 129, 211, 714, 774, 1039
VpaK11BI GGWCC 2 cut(s) 276, 475
VspI ATTAAT 1 cut(s) 153
XapI RAATTY 3 cut(s) 46, 726, 749
XceI RCATGY 2 cut(s) 859, 1138
XcmI CCANNNNNNNNNTGG 2 cut(s) 248, 868
XmaJI CCTAGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 838
XspI CTAG 3 cut(s) 165, 686, 1095
ZrmI AGTACT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.