Rh6CG405600

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000509
Physical Location & Seq
Reverse (-)
59128002 .. 59129162
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG405600.1

Sequence Viewer

Length: 687 bp
ATGGAAATCGGTTTCTGGAATGGAAATGGCATCCGGTTTATTTTTGAGAACTCATCTGCTGGGAATATGTACGATTTTAGCTTCCAGTCCAATGCAAATGAAGCGGTTTACACTTTTACTACCAGTAAGACTTATGACCTTGTGTGGTTTGTGATGAGTTACATGGGAAACCTGGACCAGTATTTTATGGTAGATGGGAAGATCTCTTCTTTGAGTCATGCTTTGTGTGAGGATTCGGCTGGTGTTCAGAATGGTCAACCAGGATGTCAACTATACTATGGGAGTAAGCAGGAGCTATTGAAGATCATAGAGAAGGGAGAAGGGCTTATATACATTCGCCGTGGTGCTCCAAGTGATGTTAAAAAGTGGAAACTCTGGTTGGCTGTTGTGGTTCCCTTGGCTTCCCTCTTGGTTCTTATACCAATCTCCATAGCCTGCTATTTGCGCTGGAGAAAGCGACTGAAAGAAGAACAAACTCGACAAGAAGCCATAATCAATTCTGATCGAGGTAGATTATTCCTTGCTTCAACAATCCATCATGATGAAGTTAGAGGTTCAAATAACATCAAATTAGGCATACACAAGGATCAAGAATTGCCCTGTTTTAGCTTTTCCACCATAAATATGGCAACAAACTACTTTGCAGAGGCTAATAAACTTGGAGAAGGTGGATATGGGCGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

228

Amino Acids

25.83

Weight (kDa)

7.65

Isoelectric Point (pI)

39.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclWI GGATC 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 679
AfaI GTAC 1 cut(s) 71
AgsI TTSAA 3 cut(s) 301, 528, 558
AjnI CCWGG 2 cut(s) 171, 259
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 3 cut(s) 81, 295, 609
AluI AGCT 3 cut(s) 81, 295, 609
Alw21I GWGCWC 1 cut(s) 349
AlwI GGATC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 175
AvaII GGWCC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 2 cut(s) 188, 543
BceAI ACGGC 1 cut(s) 324
BciT130I CCWGG 2 cut(s) 173, 261
BglII AGATCT 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 173, 261
Bme18I GGWCC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 2 cut(s) 173, 261
BmsI GCATC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 469
BsaHI GRCGYC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 340, 396
BsaWI WCCGGW 1 cut(s) 33
Bse1I ACTGG 3 cut(s) 85, 123, 178
BseBI CCWGG 2 cut(s) 173, 261
BseDI CCNNGG 2 cut(s) 340, 396
BseGI GGATG 2 cut(s) 30, 269
BseNI ACTGG 3 cut(s) 85, 123, 178
BseYI CCCAGC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 201, 303, 502, 586
BspACI CCGC 1 cut(s) 104
BspHI TCATGA 1 cut(s) 538
BspLI GGNNCC 1 cut(s) 393
BspPI GGATC 1 cut(s) 594
BsrI ACTGG 3 cut(s) 85, 123, 178
BssECI CCNNGG 2 cut(s) 340, 396
BssMI GATC 4 cut(s) 201, 303, 502, 586
BssNI GRCGYC 1 cut(s) 679
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 2 cut(s) 173, 261
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 679
BstC8I GCNNGC 1 cut(s) 436
BstDSI CCRYGG 1 cut(s) 340
BstF5I GGATG 2 cut(s) 30, 269
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 4 cut(s) 204, 306, 505, 589
BstMBI GATC 4 cut(s) 201, 303, 502, 586
BstMWI GCNNNNNNNGC 2 cut(s) 101, 444
BstNI CCWGG 2 cut(s) 173, 261
BstSCI CCNGG 2 cut(s) 171, 259
BstX2I RGATCY 1 cut(s) 201
BstXI CCANNNNNNTGG 1 cut(s) 625
BstYI RGATCY 1 cut(s) 201
BtgI CCRYGG 1 cut(s) 340
BtsCI GGATG 2 cut(s) 30, 269
Cac8I GCNNGC 1 cut(s) 436
CciI TCATGA 1 cut(s) 538
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 668
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 163, 218, 539
CviQI GTAC 1 cut(s) 70
DpnI GATC 4 cut(s) 203, 305, 504, 588
DpnII GATC 4 cut(s) 201, 303, 502, 586
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 171, 259
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 166, 221, 542
FatI CATG 3 cut(s) 162, 217, 538
FokI GGATG 2 cut(s) 17, 276
GlaI GCGC 1 cut(s) 446
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 469
HapII CCGG 1 cut(s) 34
HgaI GACGC 1 cut(s) 668
HhaI GCGC 1 cut(s) 447
Hin1I GRCGYC 1 cut(s) 679
Hin1II CATG 3 cut(s) 166, 221, 542
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 2 cut(s) 257, 269
HindII GTYRAC 2 cut(s) 257, 269
HinfI GANTC 2 cut(s) 214, 233
HpaII CCGG 1 cut(s) 34
Hpy166II GTNNAC 3 cut(s) 109, 257, 269
Hpy188I TCNGA 2 cut(s) 249, 502
Hpy188III TCNNGA 3 cut(s) 16, 539, 590
Hpy8I GTNNAC 3 cut(s) 109, 257, 269
HpyAV CCTTC 3 cut(s) 307, 314, 659
HpyCH4V TGCA 2 cut(s) 95, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 444
Hsp92I GRCGYC 1 cut(s) 679
Hsp92II CATG 3 cut(s) 166, 221, 542
HspAI GCGC 1 cut(s) 445
Kzo9I GATC 4 cut(s) 201, 303, 502, 586
LmnI GCTCC 2 cut(s) 292, 352
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 158
MalI GATC 4 cut(s) 203, 305, 504, 588
MboI GATC 4 cut(s) 201, 303, 502, 586
MboII GAAGA 4 cut(s) 198, 211, 313, 479
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 3 cut(s) 496, 569, 593
MlyI GAGTC 1 cut(s) 223
MnlI CCTC 5 cut(s) 223, 416, 500, 545, 640
MseI TTAA 1 cut(s) 360
MslI CAYNNNNRTG 2 cut(s) 540, 623
MspI CCGG 1 cut(s) 34
MspR9I CCNGG 2 cut(s) 173, 261
MvaI CCWGG 2 cut(s) 173, 261
MwoI GCNNNNNNNGC 2 cut(s) 101, 444
NdeII GATC 4 cut(s) 201, 303, 502, 586
NlaIII CATG 3 cut(s) 166, 221, 542
NlaIV GGNNCC 1 cut(s) 393
PagI TCATGA 1 cut(s) 538
PfeI GAWTC 1 cut(s) 233
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 2 cut(s) 171, 259
PspFI CCCAGC 1 cut(s) 59
PspGI CCWGG 2 cut(s) 171, 259
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 1 cut(s) 175
PsuI RGATCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 540, 623
SaqAI TTAA 1 cut(s) 360
Sau3AI GATC 4 cut(s) 201, 303, 502, 586
Sau96I GGNCC 1 cut(s) 175
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 2 cut(s) 173, 261
SduI GDGCHC 1 cut(s) 349
SetI ASST 8 cut(s) 83, 141, 174, 297, 511, 556, 611, 670
SfaNI GCATC 1 cut(s) 39
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 540, 623
Sse9I AATT 3 cut(s) 496, 569, 593
SsiI CCGC 1 cut(s) 104
StyD4I CCNGG 2 cut(s) 171, 259
StyI CCWWGG 1 cut(s) 396
TaqI TCGA 2 cut(s) 478, 505
TasI AATT 3 cut(s) 496, 569, 593
TfiI GAWTC 1 cut(s) 233
Tru1I TTAA 1 cut(s) 360
Tru9I TTAA 1 cut(s) 360
TspDTI ATGAA 2 cut(s) 114, 558
VpaK11BI GGWCC 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.