Rmu_ssc0000289.1_g000048

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0000509
Physical Location & Seq
Reverse (-)
270151 .. 271179
1029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000048.1.cds

Sequence Viewer

Length: 711 bp
atgaattgggtagactcaaccaaacgggtccttttggattggagaaagcgcatcaacattattgaaggcattgctcaaggacttcaatatcttcacaaatactcaagattaaggatcattcaccgtgatttaaagcccagcaatatcttgttggacagtgacatgaacccaaaaatttctgattttggcatggcaagaatttttggggataatgactctaaggggaaaacaaaccgggttgttggcacatttggttacatgtctcctgagtatgccatggacggactcttttctgaaaagtcagatgtgttcagctttggggtgatcttattagagatcataagtgccaagaagaatattgccttctttgaggcagatcactctctgaacttacttggcaaagcttggaatctgtggaaagaaggcagtagcatggagttgatggatccaacacttggtggttcttgttcaagcagtgaagctatcagatgcactcaaattggtcttctgtgtgtgcaagaaagagctactgatcgaccaacaatgtcagatgttatttctatgctaagcaatcagtcatgtcctctgccgcttcccaaacagcctgcatttttgagtcagttaagttctactgatgcagattcatctccaagtaggcacagacattactctcaaaatgacatgactatttcatcagaacatggcaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

236

Amino Acids

26.48

Weight (kDa)

7.01

Isoelectric Point (pI)

62.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 696
AccB7I CCANNNNNTGG 1 cut(s) 455
AccI GTMKAC 1 cut(s) 12
AciI CCGC 1 cut(s) 590
AclWI GGATC 3 cut(s) 122, 440, 453
AcsI RAATTY 2 cut(s) 174, 198
AdeI CACNNNGTG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 258
AgsI TTSAA 3 cut(s) 65, 86, 471
AluBI AGCT 4 cut(s) 315, 404, 482, 527
AluI AGCT 4 cut(s) 315, 404, 482, 527
Alw26I GTCTC 1 cut(s) 267
AlwI GGATC 3 cut(s) 122, 440, 453
ApoI RAATTY 2 cut(s) 174, 198
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 113, 334
AvaII GGWCC 1 cut(s) 28
BamHI GGATCC 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 497
BccI CCATC 1 cut(s) 436
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 696
BisI GCNGC 1 cut(s) 590
BlpI GCTNAGC 1 cut(s) 566
BlsI GCNGC 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 28
BmgT120I GGNCC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 29, 447
BmrFI CCNGG 1 cut(s) 236
BmsI GCATC 3 cut(s) 60, 479, 625
BpiI GAAGAC 1 cut(s) 497
Bpu1102I GCTNAGC 1 cut(s) 566
BpuEI CTTGAG 2 cut(s) 60, 88
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 276
BseLI CCNNNNNNNGG 1 cut(s) 455
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 1 cut(s) 258
BseYI CCCAGC 1 cut(s) 137
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 455
BsmAI GTCTC 1 cut(s) 267
Bsp143I GATC 6 cut(s) 114, 324, 336, 376, 445, 532
Bsp1720I GCTNAGC 1 cut(s) 566
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 1 cut(s) 590
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 2 cut(s) 29, 447
BspMI ACCTGC 1 cut(s) 696
BspPI GGATC 3 cut(s) 122, 440, 453
BsrDI GCAATG 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 6 cut(s) 114, 324, 336, 376, 445, 532
BssT1I CCWWGG 1 cut(s) 276
Bst4CI ACNGT 2 cut(s) 125, 158
BstC8I GCNNGC 1 cut(s) 606
BstDEI CTNAG 3 cut(s) 219, 267, 566
BstDSI CCRYGG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 6 cut(s) 117, 327, 339, 379, 448, 535
BstMAI GTCTC 1 cut(s) 267
BstMBI GATC 6 cut(s) 114, 324, 336, 376, 445, 532
BstNSI RCATGY 1 cut(s) 262
BstSCI CCNGG 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 445
BstYI RGATCY 1 cut(s) 445
BtgI CCRYGG 1 cut(s) 276
BtsI GCAGTG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 163, 481
BveI ACCTGC 1 cut(s) 696
Cac8I GCNNGC 1 cut(s) 606
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 28
CviAII CATG 8 cut(s) 163, 190, 259, 277, 433, 579, 682, 701
CviJI RGCY 6 cut(s) 136, 315, 404, 482, 527, 604
CviKI_1 RGCY 6 cut(s) 136, 315, 404, 482, 527, 604
DdeI CTNAG 3 cut(s) 219, 267, 566
DpnI GATC 6 cut(s) 116, 326, 338, 378, 447, 534
DpnII GATC 6 cut(s) 114, 324, 336, 376, 445, 532
DraI TTTAAA 1 cut(s) 132
DraIII CACNNNGTG 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 276
Eco47I GGWCC 1 cut(s) 28
EcoO109I RGGNCCY 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 8 cut(s) 166, 193, 262, 280, 436, 582, 685, 704
FatI CATG 8 cut(s) 162, 189, 258, 276, 432, 578, 681, 700
FblI GTMKAC 1 cut(s) 12
Fnu4HI GCNGC 1 cut(s) 590
Fsp4HI GCNGC 1 cut(s) 590
GlaI GCGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 590
GsaI CCCAGC 1 cut(s) 141
HapII CCGG 1 cut(s) 235
HhaI GCGC 1 cut(s) 51
Hin1II CATG 8 cut(s) 166, 193, 262, 280, 436, 582, 685, 704
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 6 cut(s) 14, 215, 285, 409, 616, 641
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 113, 334
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 7 cut(s) 181, 295, 304, 387, 488, 550, 697
Hpy188III TCNNGA 2 cut(s) 105, 266
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 59, 373, 416
HpyCH4III ACNGT 2 cut(s) 125, 158
HpyCH4V TGCA 4 cut(s) 492, 517, 608, 638
HpyF3I CTNAG 3 cut(s) 219, 267, 566
Hsp92II CATG 8 cut(s) 166, 193, 262, 280, 436, 582, 685, 704
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 6 cut(s) 114, 324, 336, 376, 445, 532
LpnPI CCDG 5 cut(s) 151, 248, 279, 618, 691
LweI GCATC 3 cut(s) 60, 479, 625
MaeIII GTNAC 2 cut(s) 158, 254
MalI GATC 6 cut(s) 116, 326, 338, 378, 447, 534
MboI GATC 6 cut(s) 114, 324, 336, 376, 445, 532
MboII GAAGA 3 cut(s) 83, 364, 497
MflI RGATCY 1 cut(s) 445
MluCI AATT 4 cut(s) 4, 174, 198, 498
MlyI GAGTC 4 cut(s) 8, 209, 279, 625
MmeI TCCRAC 2 cut(s) 132, 473
MnlI CCTC 2 cut(s) 364, 594
MseI TTAA 3 cut(s) 110, 131, 623
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 1 cut(s) 236
NciI CCSGG 1 cut(s) 236
NcoI CCATGG 1 cut(s) 276
NdeII GATC 6 cut(s) 114, 324, 336, 376, 445, 532
NlaIII CATG 8 cut(s) 166, 193, 262, 280, 436, 582, 685, 704
NlaIV GGNNCC 2 cut(s) 29, 447
NmuCI GTSAC 1 cut(s) 158
NspI RCATGY 1 cut(s) 262
PciI ACATGT 1 cut(s) 258
PfeI GAWTC 2 cut(s) 409, 641
PflMI CCANNNNNTGG 1 cut(s) 455
PkrI GCNGC 1 cut(s) 591
PleI GAGTC 4 cut(s) 8, 209, 279, 624
PpsI GAGTC 4 cut(s) 8, 209, 279, 624
PpuMI RGGWCCY 1 cut(s) 28
PscI ACATGT 1 cut(s) 258
Psp5II RGGWCCY 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 137
PspN4I GGNNCC 2 cut(s) 29, 447
PspPI GGNCC 1 cut(s) 28
PspPPI RGGWCCY 1 cut(s) 28
PsuI RGATCY 1 cut(s) 445
SaqAI TTAA 3 cut(s) 110, 131, 623
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 6 cut(s) 114, 324, 336, 376, 445, 532
Sau96I GGNCC 1 cut(s) 28
SchI GAGTC 4 cut(s) 8, 209, 279, 625
ScrFI CCNGG 1 cut(s) 236
SetI ASST 5 cut(s) 317, 406, 484, 529, 710
SfaNI GCATC 3 cut(s) 60, 479, 625
SinI GGWCC 1 cut(s) 28
SmlI CTYRAG 2 cut(s) 75, 103
SmoI CTYRAG 2 cut(s) 75, 103
Sse9I AATT 4 cut(s) 4, 174, 198, 498
SsiI CCGC 1 cut(s) 590
SspI AATATT 1 cut(s) 358
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 125, 158
TaqI TCGA 1 cut(s) 535
TasI AATT 4 cut(s) 4, 174, 198, 498
TauI GCSGC 1 cut(s) 592
TfiI GAWTC 2 cut(s) 409, 641
Tru1I TTAA 3 cut(s) 110, 131, 623
Tru9I TTAA 3 cut(s) 110, 131, 623
TscAI CASTG 2 cut(s) 163, 481
TseFI GTSAC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 4 cut(s) 17, 179, 633, 681
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 2 cut(s) 163, 481
Van91I CCANNNNNTGG 1 cut(s) 455
VpaK11BI GGWCC 1 cut(s) 28
XapI RAATTY 2 cut(s) 174, 198
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.