Rh6DG392000

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000509
Physical Location & Seq
Reverse (-)
58436899 .. 58438096
1198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG392000.1

Sequence Viewer

Length: 837 bp
ATGTACAATTTTAGCTTCCACGATGCAAGCGAAGCATTCTACACTTTTACTACAAGTAAGAATTATGACCTTGTGTGGTTTGTGATGAATTACACTGGAAACCTGGACCAATATTTTATGGTGGATGGGAAGATCTCGTCTGTGAGTCATGCTTTGTGTGAGGAGTCAGCCGGTGGTAGTACTCGGAAGTGCTTTAATACAATACCTTCTAACTGTGAAGATGGTGCTGACTTTTCTCAGATTAATGGTTTGCTGCCATCTACATCTAATACTACAGGTTCCCTAAATATGGTGAATACTGATTGTGAAACTTTCTGCAAGAACAATTGTTCTTGTACTGCATTCGCTTCAGTTCAGAATGGTCAACCAGGATGTCAACTTTACTATGGGACTAAACAGGATTTATTGAAGAACATAGAGAAGGGGGCAGGGCTTATTTACATCCGAGGTGGTGCTCCAAGTGATGATAAGAAGTGGAAACTCAGGTTGGCTGTGGCGATTCCTGTAGCTTCTCTCTTGGTTCTTATTCCAATCTTCTTCACCTGCTACCTGTGCTGGAGAAAGCGACTGAAAGAAGAACAAACTCAACAAGAAGCCATTTTCAATTCTGATCAAGTGAGATTATTCCATGCGTCGCCATTTCATCACCATGAAGTTGGAGGTGTGAATAACATGGAACTAGGCATACACAAGGATAAAGAATTGCCCCTTTTTAGTTTTGCCACCATAAAGAAGGCAACAAATTACTTTGCAGATTCTAATAAACTTGGAGAAGGTGGATATGGGCCTGTCTATAAGGCAAGAATCGGTTCCCTGCTTTACATCTATGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

278

Amino Acids

31.08

Weight (kDa)

6.38

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 74 - 128 1.2e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 551
Acc36I ACCTGC 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 3 cut(s) 5, 181, 337
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 2 cut(s) 409, 604
AjnI CCWGG 2 cut(s) 102, 367
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AluBI AGCT 2 cut(s) 15, 509
AluI AGCT 2 cut(s) 15, 509
Alw21I GWGCWC 1 cut(s) 457
AoxI GGCC 1 cut(s) 785
ApeKI GCWGC 1 cut(s) 253
AseI ATTAAT 1 cut(s) 243
Asp700I GAANNNNTTC 1 cut(s) 808
AspS9I GGNCC 2 cut(s) 106, 785
AsuHPI GGTGA 3 cut(s) 304, 532, 638
AvaII GGWCC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 457
BbvI GCAGC 1 cut(s) 240
BccI CCATC 3 cut(s) 119, 215, 265
BciT130I CCWGG 2 cut(s) 104, 369
BclI TGATCA 1 cut(s) 610
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 2 cut(s) 273, 504
BfuAI ACCTGC 1 cut(s) 551
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 104, 369
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 2 cut(s) 106, 785
BmiI GGNNCC 2 cut(s) 280, 811
BmrFI CCNGG 2 cut(s) 104, 369
BmsI GCATC 1 cut(s) 13
BpmI CTGGAG 1 cut(s) 577
BsaJI CCNNGG 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 1 cut(s) 100
BseBI CCWGG 2 cut(s) 104, 369
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 3 cut(s) 130, 377, 441
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMII CTCAG 2 cut(s) 251, 496
BseNI ACTGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 1 cut(s) 240
BshFI GGCC 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 457
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 1 cut(s) 289
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 2 cut(s) 35, 341
BsnI GGCC 1 cut(s) 787
Bsp1286I GDGCHC 1 cut(s) 457
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 132, 610
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 2 cut(s) 250, 495
BspLI GGNNCC 2 cut(s) 280, 811
BspMI ACCTGC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 100
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 2 cut(s) 132, 610
Bst2UI CCWGG 2 cut(s) 104, 369
Bst4CI ACNGT 1 cut(s) 215
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 2 cut(s) 237, 482
BstF5I GGATG 3 cut(s) 130, 377, 441
BstKTI GATC 2 cut(s) 135, 613
BstMBI GATC 2 cut(s) 132, 610
BstMWI GCNNNNNNNGC 2 cut(s) 32, 552
BstNI CCWGG 2 cut(s) 104, 369
BstSCI CCNGG 2 cut(s) 102, 367
BstSFI CTRYAG 2 cut(s) 273, 504
BstV1I GCAGC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 132
BstXI CCANNNNNNTGG 1 cut(s) 656
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 787
BtsCI GGATG 3 cut(s) 130, 377, 441
BtsIMutI CAGTG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 551
Cac8I GCNNGC 1 cut(s) 28
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 106, 785
CseI GACGC 1 cut(s) 621
Csp6I GTAC 3 cut(s) 4, 180, 336
CviAII CATG 4 cut(s) 149, 629, 650, 673
CviJI RGCY 7 cut(s) 15, 170, 433, 491, 509, 596, 787
CviKI_1 RGCY 7 cut(s) 15, 170, 433, 491, 509, 596, 787
CviQI GTAC 3 cut(s) 4, 180, 336
DdeI CTNAG 2 cut(s) 237, 482
DpnI GATC 2 cut(s) 134, 612
DpnII GATC 2 cut(s) 132, 610
Eco47I GGWCC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 102, 367
FaeI CATG 4 cut(s) 152, 632, 653, 676
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 148, 628, 649, 672
FbaI TGATCA 1 cut(s) 610
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 3 cut(s) 137, 384, 428
Fsp4HI GCNGC 1 cut(s) 254
FspBI CTAG 1 cut(s) 680
GluI GCNGC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 577
HaeIII GGCC 1 cut(s) 787
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 621
Hin1II CATG 4 cut(s) 152, 632, 653, 676
HincII GTYRAC 2 cut(s) 365, 377
HindII GTYRAC 2 cut(s) 365, 377
HinfI GANTC 5 cut(s) 145, 164, 499, 755, 804
HpaII CCGG 1 cut(s) 171
HphI GGTGA 3 cut(s) 304, 532, 638
Hpy166II GTNNAC 2 cut(s) 365, 377
Hpy188I TCNGA 5 cut(s) 186, 240, 357, 446, 610
Hpy8I GTNNAC 2 cut(s) 365, 377
Hpy99I CGWCG 1 cut(s) 637
HpyAV CCTTC 4 cut(s) 216, 415, 727, 767
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 4 cut(s) 26, 318, 341, 752
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 552
HpyF3I CTNAG 2 cut(s) 237, 482
Hsp92II CATG 4 cut(s) 152, 632, 653, 676
Ksp22I TGATCA 1 cut(s) 610
Kzo9I GATC 2 cut(s) 132, 610
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 240
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 680
MalI GATC 2 cut(s) 134, 612
MboI GATC 2 cut(s) 132, 610
MboII GAAGA 6 cut(s) 142, 230, 421, 526, 529, 587
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 457
MluCI AATT 7 cut(s) 7, 61, 88, 325, 604, 701, 742
MlyI GAGTC 2 cut(s) 154, 173
MmeI TCCRAC 1 cut(s) 637
MnlI CCTC 3 cut(s) 154, 440, 653
MroXI GAANNNNTTC 1 cut(s) 808
MseI TTAA 3 cut(s) 195, 243, 835
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 104, 369
MunI CAATTG 1 cut(s) 325
Mva1269I GAATGC 2 cut(s) 35, 341
MvaI CCWGG 2 cut(s) 104, 369
MwoI GCNNNNNNNGC 2 cut(s) 32, 552
NdeII GATC 2 cut(s) 132, 610
NlaIII CATG 4 cut(s) 152, 632, 653, 676
NlaIV GGNNCC 2 cut(s) 280, 811
PaqCI CACCTGC 1 cut(s) 551
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PctI GAATGC 2 cut(s) 35, 341
PdmI GAANNNNTTC 1 cut(s) 808
PfeI GAWTC 3 cut(s) 499, 755, 804
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 2 cut(s) 153, 172
PpsI GAGTC 2 cut(s) 153, 172
PshBI ATTAAT 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 102, 367
PspGI CCWGG 2 cut(s) 102, 367
PspN4I GGNNCC 2 cut(s) 280, 811
PspPI GGNCC 2 cut(s) 106, 785
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 3 cut(s) 5, 181, 337
RsaNI GTAC 3 cut(s) 4, 180, 336
RseI CAYNNNNRTG 1 cut(s) 648
SaqAI TTAA 3 cut(s) 195, 243, 835
SatI GCNGC 1 cut(s) 254
Sau3AI GATC 2 cut(s) 132, 610
Sau96I GGNCC 2 cut(s) 106, 785
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 2 cut(s) 154, 173
ScrFI CCNGG 2 cut(s) 104, 369
SduI GDGCHC 1 cut(s) 457
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 2 cut(s) 273, 504
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 648
Sse9I AATT 7 cut(s) 7, 61, 88, 325, 604, 701, 742
SspI AATATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 680
StyD4I CCNGG 2 cut(s) 102, 367
TaaI ACNGT 1 cut(s) 215
TasI AATT 7 cut(s) 7, 61, 88, 325, 604, 701, 742
TatI WGTACW 3 cut(s) 3, 179, 335
TfiI GAWTC 3 cut(s) 499, 755, 804
Tru1I TTAA 3 cut(s) 195, 243, 835
Tru9I TTAA 3 cut(s) 195, 243, 835
TscAI CASTG 1 cut(s) 100
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 101, 632, 666
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 106
VspI ATTAAT 1 cut(s) 243
XmnI GAANNNNTTC 1 cut(s) 808
XspI CTAG 1 cut(s) 680
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.