RLG00000011514

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000509
Physical Location & Seq
Forward (+)
10128813 .. 10129294
482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011514

Sequence Viewer

Length: 423 bp
ATGGCCATGGTTCTTCCTGTTATTTTCTTGATATCATTTCTTAGCTTCTTTTCATTTTCATCTCTTGCAACAGACACCCTTACACCTTCAGACACATTAAGAGACAGTCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGTGCTTGGCTTTTTCAATGAAAGCTCTTCAGGTTATTACTATCTGGGAATTTGGTTCAAAGCTGATGCAAACAAGGTTGTCTGGGTTGACCGCGAAAATCCCATAATGGATTCATCTGGCCTGCTTCAAATCCGGTCTGGGAATTTGGTTCTCACAGACCGTCGACAAGTGCTACTGATAGTCAACTCCGGAAATCTTGCCCCCACTACAACTAATACAAGTGCAACACTTCTTGATACTGGAAACTTGGTCCTCAAGGAAGCAGTTACAGATCGGGTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

141

Amino Acids

15.26

Weight (kDa)

4.66

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 134 2.5e-11 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 231
AccIII TCCGGA 1 cut(s) 326
AciI CCGC 1 cut(s) 229
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 186, 280
AcuI CTGAAG 2 cut(s) 72, 150
AgsI TTSAA 3 cut(s) 154, 196, 266
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 4 cut(s) 45, 125, 162, 200
AluI AGCT 4 cut(s) 45, 125, 162, 200
Alw26I GTCTC 1 cut(s) 96
Aor13HI TCCGGA 1 cut(s) 326
AoxI GGCC 2 cut(s) 3, 256
ApoI RAATTY 2 cut(s) 186, 280
AspS9I GGNCC 1 cut(s) 388
AvaII GGWCC 1 cut(s) 388
BalI TGGCCA 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 6, 114
BsaWI WCCGGW 2 cut(s) 270, 326
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bse1I ACTGG 1 cut(s) 382
BseAI TCCGGA 1 cut(s) 326
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 6, 114
BseNI ACTGG 1 cut(s) 382
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 5, 258
BsiSI CCGG 2 cut(s) 271, 327
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 5, 258
Bsp13I TCCGGA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 409
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 1 cut(s) 229
BspANI GGCC 2 cut(s) 5, 258
BspEI TCCGGA 1 cut(s) 326
BspFNI CGCG 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 382
BssECI CCNNGG 2 cut(s) 6, 114
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 107, 299
Bst6I CTCTTC 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 6
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 1 cut(s) 412
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 409
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 231
BsuRI GGCC 2 cut(s) 5, 258
BtgI CCRYGG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 388
CviAII CATG 1 cut(s) 7
CviJI RGCY 7 cut(s) 5, 45, 125, 147, 162, 200, 258
CviKI_1 RGCY 7 cut(s) 5, 45, 125, 147, 162, 200, 258
DdeI CTNAG 1 cut(s) 41
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 6
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 72, 150
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
FaeI CATG 1 cut(s) 10
FaiI YATR 2 cut(s) 8, 242
FatI CATG 1 cut(s) 6
FblI GTMKAC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 5, 258
HapII CCGG 2 cut(s) 271, 327
Hin1II CATG 1 cut(s) 10
HincII GTYRAC 3 cut(s) 226, 302, 322
HindII GTYRAC 3 cut(s) 226, 302, 322
HinfI GANTC 1 cut(s) 248
HpaII CCGG 2 cut(s) 271, 327
Hpy166II GTNNAC 3 cut(s) 226, 302, 322
Hpy188I TCNGA 1 cut(s) 91
Hpy188III TCNNGA 3 cut(s) 28, 327, 371
Hpy8I GTNNAC 3 cut(s) 226, 302, 322
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 1 cut(s) 96
HpyCH4III ACNGT 2 cut(s) 107, 299
HpyCH4V TGCA 3 cut(s) 68, 206, 362
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 1 cut(s) 10
Kpn2I TCCGGA 1 cut(s) 326
Kzo9I GATC 1 cut(s) 409
LguI GCTCTTC 1 cut(s) 169
LweI GCATC 1 cut(s) 193
MaeIII GTNAC 1 cut(s) 403
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 5, 156
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 186, 280
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 1 cut(s) 401
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 326
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 98, 421
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 271, 327
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 6
NdeII GATC 1 cut(s) 409
NlaIII CATG 1 cut(s) 10
PciSI GCTCTTC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 248
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspPI GGNCC 1 cut(s) 388
PvuII CAGCTG 1 cut(s) 125
SalI GTCGAC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 98, 421
Sau3AI GATC 1 cut(s) 409
Sau96I GGNCC 1 cut(s) 388
ScrFI CCNGG 1 cut(s) 116
SetI ASST 7 cut(s) 47, 88, 127, 164, 172, 202, 216
SfaNI GCATC 1 cut(s) 193
SinI GGWCC 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 186, 280
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 2 cut(s) 107, 299
TaqI TCGA 1 cut(s) 301
TasI AATT 2 cut(s) 186, 280
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 98, 421
Tru9I TTAA 2 cut(s) 98, 421
TspDTI ATGAA 4 cut(s) 42, 48, 171, 240
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 2 cut(s) 186, 280
XmiI GTMKAC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.