Rmu_co8319199.1_g000001

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8319199.1
OG0000509
Physical Location & Seq
Reverse (-)
2 .. 855
854 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8319199.1_g000001.1.cds

Sequence Viewer

Length: 416 bp
ctggtttctgcaggcggagtcttcgtccttggcttcttcatcgatagctcttcaggtaatcactatctaggtatatggctgagagcttatgcaaacagagttgtttgggttgcctaccgtgaaatacctatattggactcttccggcgtgcttcaaatccggtcagggaatctggttgtctccgaccgacgacaactgcagctcatagtcaactcgggaaacgttgccaccaccaccaacacgagtgcaacacttcttgatacgggaaatcttgtgctcaaggatgaaaatacaggtaccactgtatggcaaagcttcgatgtaccaactgatacatatcttccggggatgaaagttgggttgtttggcctaaacacaagccaacaaagctttcggattctcacttcctgggaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

138

Amino Acids

15.1

Weight (kDa)

5.74

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccB7I CCANNNNNTGG 1 cut(s) 306
AciI CCGC 1 cut(s) 15
AclI AACGTT 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 36
AfaI GTAC 2 cut(s) 298, 324
AfiI CCNNNNNNNGG 1 cut(s) 306
AgsI TTSAA 1 cut(s) 155
AjnI CCWGG 1 cut(s) 407
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
AluBI AGCT 5 cut(s) 48, 86, 202, 315, 390
AluI AGCT 5 cut(s) 48, 86, 202, 315, 390
Alw21I GWGCWC 1 cut(s) 279
Alw26I GTCTC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 199
Asp718I GGTACC 1 cut(s) 296
AsuC2I CCSGG 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 214
BaeI ACNNNNGTAYC 2 cut(s) 288, 321
BanI GGYRCC 1 cut(s) 296
BauI CACGAG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 211
BciT130I CCWGG 1 cut(s) 409
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 1 cut(s) 184
BfaI CTAG 1 cut(s) 68
BfmI CTRYAG 2 cut(s) 9, 197
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 2 cut(s) 345, 409
BmeT110I CYCGRG 1 cut(s) 214
BmiI GGNNCC 1 cut(s) 298
BmrFI CCNGG 2 cut(s) 345, 409
BpiI GAAGAC 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 263
BpuMI CCSGG 1 cut(s) 345
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 3 cut(s) 28, 344, 408
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 306
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 1 cut(s) 409
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 28, 344, 408
BseGI GGATG 2 cut(s) 289, 354
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 306
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 296
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 279
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 3 cut(s) 144, 160, 344
BslI CCNNNNNNNGG 1 cut(s) 306
BsmAI GTCTC 1 cut(s) 184
BsnI GGCC 1 cut(s) 369
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 279
BspACI CCGC 1 cut(s) 15
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 72
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 1 cut(s) 298
BspMAI CTGCAG 2 cut(s) 13, 201
BspQI GCTCTTC 1 cut(s) 55
BspT107I GGYRCC 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 28, 344, 408
BssSI CACGAG 1 cut(s) 241
BssT1I CCWWGG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 409
Bst4CI ACNGT 2 cut(s) 119, 304
Bst6I CTCTTC 2 cut(s) 55, 145
BstC8I GCNNGC 2 cut(s) 13, 149
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 2 cut(s) 289, 354
BstMAI GTCTC 1 cut(s) 184
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 387
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 343, 407
BstSFI CTRYAG 2 cut(s) 9, 197
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 42
BtsCI GGATG 2 cut(s) 289, 354
BtsIMutI CAGTG 1 cut(s) 300
Cac8I GCNNGC 2 cut(s) 13, 149
ClaI ATCGAT 1 cut(s) 42
Csp6I GTAC 2 cut(s) 297, 323
CviJI RGCY 9 cut(s) 33, 48, 79, 86, 202, 315, 369, 381, 390
CviKI_1 RGCY 9 cut(s) 33, 48, 79, 86, 202, 315, 369, 381, 390
CviQI GTAC 2 cut(s) 297, 323
DdeI CTNAG 1 cut(s) 80
Eam1104I CTCTTC 2 cut(s) 55, 145
EarI CTCTTC 2 cut(s) 55, 145
EciI GGCGGA 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 28
Eco57I CTGAAG 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 7 cut(s) 74, 76, 90, 131, 206, 307, 337
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 2 cut(s) 296, 361
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 68
GluI GCNGC 1 cut(s) 200
HaeIII GGCC 1 cut(s) 369
HapII CCGG 3 cut(s) 144, 160, 344
HincII GTYRAC 1 cut(s) 211
HindII GTYRAC 1 cut(s) 211
HindIII AAGCTT 2 cut(s) 313, 388
HinfI GANTC 4 cut(s) 18, 137, 169, 397
HpaII CCGG 3 cut(s) 144, 160, 344
Hpy166II GTNNAC 1 cut(s) 211
Hpy188I TCNGA 2 cut(s) 184, 396
Hpy188III TCNNGA 2 cut(s) 216, 257
Hpy8I GTNNAC 1 cut(s) 211
Hpy99I CGWCG 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 119, 304
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 11, 92, 199, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 387
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 1 cut(s) 222
KpnI GGTACC 1 cut(s) 300
LguI GCTCTTC 1 cut(s) 55
LpnPI CCDG 8 cut(s) 39, 150, 157, 158, 173, 279, 357, 394
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 222
MboII GAAGA 5 cut(s) 13, 28, 42, 132, 332
MhlI GDGCHC 1 cut(s) 279
MlyI GAGTC 2 cut(s) 27, 131
MmeI TCCRAC 1 cut(s) 207
MspI CCGG 3 cut(s) 144, 160, 344
MspR9I CCNGG 2 cut(s) 345, 409
MvaI CCWGG 1 cut(s) 409
MwoI GCNNNNNNNGC 1 cut(s) 387
NciI CCSGG 1 cut(s) 345
NlaIV GGNNCC 1 cut(s) 298
PciSI GCTCTTC 1 cut(s) 55
PfeI GAWTC 2 cut(s) 169, 397
PflMI CCANNNNNTGG 1 cut(s) 306
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 2 cut(s) 26, 131
PpsI GAGTC 2 cut(s) 26, 131
Psp1406I AACGTT 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 298
PstI CTGCAG 2 cut(s) 13, 201
RsaI GTAC 2 cut(s) 298, 324
RsaNI GTAC 2 cut(s) 297, 323
SapI GCTCTTC 1 cut(s) 55
SatI GCNGC 1 cut(s) 200
SchI GAGTC 2 cut(s) 27, 131
ScrFI CCNGG 2 cut(s) 345, 409
SduI GDGCHC 1 cut(s) 279
SfcI CTRYAG 2 cut(s) 9, 197
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SsiI CCGC 1 cut(s) 15
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 343, 407
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 119, 304
TaiI ACGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 42, 318
TaqII GACCGA 1 cut(s) 201
TfiI GAWTC 2 cut(s) 169, 397
TscAI CASTG 1 cut(s) 307
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 28, 300, 365
TspRI CASTG 1 cut(s) 307
Van91I CCANNNNNTGG 1 cut(s) 306
XspI CTAG 1 cut(s) 68
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.