Rh6DG391900

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
58419499 .. 58430931
11433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG391900.1

Sequence Viewer

Length: 1764 bp
ATGGAAATCGGTTTCTGGAATGGAAATGGCATCCGGTTTATTTTTGAGAACTCATCTGCTGGGAATATGTACGATTTTAGCTTCCAGTCCAATGCAAATGAAGCTGTTTACACTTTTACTACCAGTAAGACTTATGACCTTGTGTGGTTTGTGATGAGTTACATGGGAAACCTGGACCAGTATTTTATGGTAGATGGGAAGATCTCTTCTTTGAGTCATGCTTTGTGTGAGGATTCGGCTGGTGTTCAGAATGGTCAACCAGGATGTCAACTATACTATGGGAGTAAGCAGGAGCTATTGAAGATCATAGAGAAGGGAGAAGGGCTTATATACATTCGGCGTGGTGCTCCAAGTGATGCTAAAAAGTGGAAACTCTGGTTGGCTGTTGTGGTTCCCTTGGCTTCCCTCTTGGTTCTTATACCAATCTCCATAGCCTGCTATTTGCGCTGGGGAAAGCGACTGAAAGAAGAACAAACTCGACAAGAAGCCATAATCAATTCTGATCGAGACACACTTACACCTTCAGATGCATTAAGAGACAGTCAAACGCTGGTTTCAGCTGGTGGAGTTTTCGTGCTTGGCTTTTTCAATGAAAGCTCTTCAGGTTATTACTATCTGGGAATTTGGTTTAAAGCTGATGCAAACAAGGTTGTCTGGGTTGACCGCGAAAACCCCATATTGGATTCATCTGGCCTGCTTCAAATCCGGTCTGGGAATTTGGTTCTCACAGACCGTCGACAAGTGCTACTGATAGTCAACTCAGGAAATCTTGCCACCACTACAACTAATACAAGTGCAACACTTCTTGATACTGGAAACTTGGTCCTCAAGGAAGCAGTTACAGGTACTACTATATGGCAGAGTTTTGATATACCAACTGATACTTATCTTCCTGGGATGAAGATTGGGTTATTTAACCTAGACACAACCCAGCAGACCTTTCACATTCTTGTTTCTTGGGCAAGCCCTCAAAATCCAACTCGTGGCCTATTTACCTTAAGCATTGATGCCAACGATCACACAAGGATTTCGGTTTGGCGAGGAGATGGAGCTAAGATGAATATCGGTTTCTGGGAAGGAAATGGCTTACGGTTTATTTTTGAGAACTCAACTGAGAATATGTACAATTTTAGCTTCCAGTCCAATCAATCTGAAGCCTTCTACACTTTTAGCACACCGAAGAACTACGACCTCATGTGGTTTGTGATGGCTTCCACAGGAACGCTGGACCAGTATTTTATGTTGGATGGGAAGATTTCTAATGTGAGTCATGCTTTGTGTGAAGATTCAAATGGTGGAAATACTGGGAGGTGCTTGACTTCACTACCATCTATGTGTGATGATGGTAAATTTTCTGAGATGAATGGTTTACTACCATCTAACACTAGTACTGATTCCATCATTGTATGGACTGCTGATTGTGAAACGCTGTGCAAAAACAATTGTTCTTGTACTGCATATACTTCACTTCACAATGGACAACCAGGATGCCAATTGTATTATGGGAGCAGACAAAATCTATCGAAGATCATAGAGAAGGGCGCGGGGGTTATTTACATCCGCAGTGGTGCTTCAACTGATGATAAGAAGTGGAAGCTCTGGTTGTCTATCGCAGTTCCTTTGGCTTCCCTCTTGATTTCTATTTCAATCTCCTTCTTCTGGTATATGCGTTGCAGAAGGAAACATAAAGAAGATCAAGTAACCAGACGAGAATCTGATCAAGCAAGATACACTTACATCCGAAGGCACACTAAGAAACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

587

Amino Acids

65.96

Weight (kDa)

6.67

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 217 - 320 5.2e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 983
AccI GTMKAC 1 cut(s) 736
AccII CGCG 2 cut(s) 666, 1544
AciI CCGC 3 cut(s) 664, 1544, 1561
AcsI RAATTY 3 cut(s) 621, 715, 1349
AcuI CTGAAG 3 cut(s) 507, 585, 1173
AfaI GTAC 5 cut(s) 71, 847, 1124, 1390, 1453
AfiI CCNNNNNNNGG 3 cut(s) 679, 983, 1659
AflII CTTAAG 1 cut(s) 997
AgsI TTSAA 6 cut(s) 301, 589, 701, 1290, 1575, 1647
AhlI ACTAGT 1 cut(s) 1385
AjnI CCWGG 4 cut(s) 171, 259, 892, 1483
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 9 cut(s) 81, 104, 295, 560, 597, 635, 1052, 1134, 1597
AluI AGCT 9 cut(s) 81, 104, 295, 560, 597, 635, 1052, 1134, 1597
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 501, 531
AoxI GGCC 2 cut(s) 691, 985
ApoI RAATTY 3 cut(s) 621, 715, 1349
AspLEI GCGC 2 cut(s) 447, 1544
AspS9I GGNCC 3 cut(s) 175, 823, 1228
AvaII GGWCC 3 cut(s) 175, 823, 1228
BauI CACGAG 1 cut(s) 981
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 8 cut(s) 188, 1040, 1201, 1241, 1336, 1337, 1384, 1406
BciT130I CCWGG 4 cut(s) 173, 261, 894, 1485
BclI TGATCA 1 cut(s) 1717
BcoDI GTCTC 2 cut(s) 501, 531
BcuI ACTAGT 1 cut(s) 1385
BfaI CTAG 2 cut(s) 920, 1386
BfrI CTTAAG 1 cut(s) 997
BglII AGATCT 1 cut(s) 201
BmcAI AGTACT 1 cut(s) 1390
Bme1390I CCNGG 4 cut(s) 173, 261, 894, 1485
Bme18I GGWCC 3 cut(s) 175, 823, 1228
BmgT120I GGNCC 3 cut(s) 175, 823, 1228
BmiI GGNNCC 1 cut(s) 393
BmrFI CCNGG 4 cut(s) 173, 261, 894, 1485
BmrI ACTGGG 1 cut(s) 1314
BmsI GCATC 6 cut(s) 39, 346, 517, 628, 997, 1478
BmuI ACTGGG 1 cut(s) 1314
BpuEI CTTGAG 1 cut(s) 812
BsaBI GATNNNNATC 2 cut(s) 885, 1061
BsaJI CCNNGG 2 cut(s) 396, 893
BsaWI WCCGGW 2 cut(s) 33, 705
BsaXI ACNNNNNCTCC 2 cut(s) 558, 588
Bsc4I CCNNNNNNNGG 3 cut(s) 679, 983, 1659
Bse1I ACTGG 7 cut(s) 85, 123, 178, 817, 1138, 1231, 1309
Bse8I GATNNNNATC 2 cut(s) 885, 1061
BseBI CCWGG 4 cut(s) 173, 261, 894, 1485
BseDI CCNNGG 2 cut(s) 396, 893
BseGI GGATG 7 cut(s) 30, 269, 903, 1252, 1493, 1557, 1737
BseJI GATNNNNATC 2 cut(s) 885, 1061
BseLI CCNNNNNNNGG 3 cut(s) 679, 983, 1659
BseMII CTCAG 3 cut(s) 774, 1104, 1347
BseNI ACTGG 7 cut(s) 85, 123, 178, 817, 1138, 1231, 1309
BseRI GAGGAG 1 cut(s) 1056
BseYI CCCAGC 3 cut(s) 59, 447, 930
Bsh1236I CGCG 2 cut(s) 666, 1544
BshFI GGCC 2 cut(s) 693, 987
BsiHKAI GWGCWC 1 cut(s) 349
BsiSI CCGG 2 cut(s) 34, 706
BslI CCNNNNNNNGG 3 cut(s) 679, 983, 1659
BsmAI GTCTC 2 cut(s) 501, 531
BsnI GGCC 2 cut(s) 693, 987
Bsp1286I GDGCHC 1 cut(s) 349
Bsp1407I TGTACA 1 cut(s) 1122
Bsp143I GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
BspACI CCGC 3 cut(s) 664, 1544, 1561
BspANI GGCC 2 cut(s) 693, 987
BspCNI CTCAG 3 cut(s) 773, 1105, 1348
BspFNI CGCG 2 cut(s) 666, 1544
BspLI GGNNCC 1 cut(s) 393
BspQI GCTCTTC 1 cut(s) 604
BspTI CTTAAG 1 cut(s) 997
BsrGI TGTACA 1 cut(s) 1122
BsrI ACTGG 7 cut(s) 85, 123, 178, 817, 1138, 1231, 1309
BssECI CCNNGG 2 cut(s) 396, 893
BssMI GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 4 cut(s) 173, 261, 894, 1485
Bst4CI ACNGT 3 cut(s) 542, 734, 1092
Bst6I CTCTTC 2 cut(s) 211, 604
BstAFI CTTAAG 1 cut(s) 997
BstAUI TGTACA 1 cut(s) 1122
BstC8I GCNNGC 3 cut(s) 436, 695, 964
BstDEI CTNAG 5 cut(s) 760, 1053, 1113, 1356, 1752
BstF5I GGATG 7 cut(s) 30, 269, 903, 1252, 1493, 1557, 1737
BstFNI CGCG 2 cut(s) 666, 1544
BstHHI GCGC 2 cut(s) 447, 1544
BstKTI GATC 7 cut(s) 204, 306, 505, 1018, 1530, 1696, 1720
BstMAI GTCTC 2 cut(s) 501, 531
BstMBI GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
BstMWI GCNNNNNNNGC 2 cut(s) 101, 444
BstNI CCWGG 4 cut(s) 173, 261, 894, 1485
BstSCI CCNGG 4 cut(s) 171, 259, 892, 1483
BstUI CGCG 2 cut(s) 666, 1544
BstX2I RGATCY 1 cut(s) 201
BstYI RGATCY 1 cut(s) 201
BsuRI GGCC 2 cut(s) 693, 987
BtsCI GGATG 7 cut(s) 30, 269, 903, 1252, 1493, 1557, 1737
BtsI GCAGTG 1 cut(s) 1570
BtsIMutI CAGTG 1 cut(s) 1570
Cac8I GCNNGC 3 cut(s) 436, 695, 964
CfoI GCGC 2 cut(s) 447, 1544
Cfr13I GGNCC 3 cut(s) 175, 823, 1228
Csp6I GTAC 5 cut(s) 70, 846, 1123, 1389, 1452
CviAII CATG 4 cut(s) 163, 218, 1195, 1271
CviQI GTAC 5 cut(s) 70, 846, 1123, 1389, 1452
DdeI CTNAG 5 cut(s) 760, 1053, 1113, 1356, 1752
DpnI GATC 7 cut(s) 203, 305, 504, 1017, 1529, 1695, 1719
DpnII GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
DraI TTTAAA 1 cut(s) 631
Eam1104I CTCTTC 2 cut(s) 211, 604
EarI CTCTTC 2 cut(s) 211, 604
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 3 cut(s) 175, 823, 1228
Eco57I CTGAAG 3 cut(s) 507, 585, 1173
EcoRII CCWGG 4 cut(s) 171, 259, 892, 1483
EcoT14I CCWWGG 1 cut(s) 396
EcoT22I ATGCAT 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 4 cut(s) 166, 221, 1198, 1274
FalI AAGNNNNNCTT 2 cut(s) 1717, 1749
FatI CATG 4 cut(s) 162, 217, 1194, 1270
FauI CCCGC 1 cut(s) 1537
FbaI TGATCA 1 cut(s) 1717
FblI GTMKAC 1 cut(s) 736
FokI GGATG 7 cut(s) 17, 276, 910, 1259, 1500, 1544, 1724
FspBI CTAG 2 cut(s) 920, 1386
GlaI GCGC 2 cut(s) 446, 1543
GsaI CCCAGC 3 cut(s) 63, 451, 934
HaeIII GGCC 2 cut(s) 693, 987
HapII CCGG 2 cut(s) 34, 706
HhaI GCGC 2 cut(s) 447, 1544
Hin1II CATG 4 cut(s) 166, 221, 1198, 1274
Hin6I GCGC 2 cut(s) 445, 1542
HinP1I GCGC 2 cut(s) 445, 1542
HincII GTYRAC 5 cut(s) 257, 269, 661, 737, 757
HindII GTYRAC 5 cut(s) 257, 269, 661, 737, 757
HinfI GANTC 7 cut(s) 214, 233, 683, 1267, 1286, 1394, 1712
HpaII CCGG 2 cut(s) 34, 706
Hpy166II GTNNAC 7 cut(s) 109, 257, 269, 661, 737, 757, 1370
Hpy188I TCNGA 7 cut(s) 249, 502, 526, 1153, 1357, 1717, 1742
Hpy188III TCNNGA 5 cut(s) 16, 506, 762, 806, 1633
Hpy8I GTNNAC 7 cut(s) 109, 257, 269, 661, 737, 757, 1370
Hpy99I CGWCG 1 cut(s) 738
HpyAV CCTTC 9 cut(s) 307, 314, 531, 1070, 1168, 1531, 1663, 1671, 1737
HpyCH4III ACNGT 3 cut(s) 542, 734, 1092
HpyCH4V TGCA 7 cut(s) 95, 530, 641, 797, 1434, 1457, 1674
HpyF10VI GCNNNNNNNGC 2 cut(s) 101, 444
HpyF3I CTNAG 5 cut(s) 760, 1053, 1113, 1356, 1752
Hsp92II CATG 4 cut(s) 166, 221, 1198, 1274
HspAI GCGC 2 cut(s) 445, 1542
Ksp22I TGATCA 1 cut(s) 1717
Kzo9I GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
LguI GCTCTTC 1 cut(s) 604
LmnI GCTCC 4 cut(s) 292, 352, 1049, 1506
LweI GCATC 6 cut(s) 39, 346, 517, 628, 997, 1478
MaeI CTAG 2 cut(s) 920, 1386
MaeIII GTNAC 3 cut(s) 158, 838, 1699
MalI GATC 7 cut(s) 203, 305, 504, 1017, 1529, 1695, 1719
MboI GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
MfeI CAATTG 2 cut(s) 1441, 1493
MflI RGATCY 1 cut(s) 201
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 7 cut(s) 496, 621, 715, 1126, 1349, 1441, 1493
MlyI GAGTC 2 cut(s) 223, 1276
MmeI TCCRAC 2 cut(s) 1001, 1224
MnlI CCTC 8 cut(s) 223, 416, 836, 978, 1034, 1202, 1302, 1640
Mph1103I ATGCAT 1 cut(s) 532
MseI TTAA 4 cut(s) 533, 630, 915, 998
MslI CAYNNNNRTG 1 cut(s) 1333
MspA1I CMGCKG 1 cut(s) 560
MspCI CTTAAG 1 cut(s) 997
MspI CCGG 2 cut(s) 34, 706
MspR9I CCNGG 4 cut(s) 173, 261, 894, 1485
MunI CAATTG 2 cut(s) 1441, 1493
MvaI CCWGG 4 cut(s) 173, 261, 894, 1485
MvnI CGCG 2 cut(s) 666, 1544
MwoI GCNNNNNNNGC 2 cut(s) 101, 444
NdeII GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
NlaIII CATG 4 cut(s) 166, 221, 1198, 1274
NlaIV GGNNCC 1 cut(s) 393
NsiI ATGCAT 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 604
PfeI GAWTC 5 cut(s) 233, 683, 1286, 1394, 1712
PflMI CCANNNNNTGG 1 cut(s) 983
PleI GAGTC 2 cut(s) 222, 1275
PpsI GAGTC 2 cut(s) 222, 1275
Psp6I CCWGG 4 cut(s) 171, 259, 892, 1483
PspFI CCCAGC 3 cut(s) 59, 447, 930
PspGI CCWGG 4 cut(s) 171, 259, 892, 1483
PspN4I GGNNCC 1 cut(s) 393
PspPI GGNCC 3 cut(s) 175, 823, 1228
PsuI RGATCY 1 cut(s) 201
PvuII CAGCTG 1 cut(s) 560
RsaI GTAC 5 cut(s) 71, 847, 1124, 1390, 1453
RsaNI GTAC 5 cut(s) 70, 846, 1123, 1389, 1452
RseI CAYNNNNRTG 1 cut(s) 1333
SalI GTCGAC 1 cut(s) 735
SapI GCTCTTC 1 cut(s) 604
SaqAI TTAA 4 cut(s) 533, 630, 915, 998
Sau3AI GATC 7 cut(s) 201, 303, 502, 1015, 1527, 1693, 1717
Sau96I GGNCC 3 cut(s) 175, 823, 1228
ScaI AGTACT 1 cut(s) 1390
SchI GAGTC 2 cut(s) 223, 1276
ScrFI CCNGG 4 cut(s) 173, 261, 894, 1485
SduI GDGCHC 1 cut(s) 349
SfaNI GCATC 6 cut(s) 39, 346, 517, 628, 997, 1478
SinI GGWCC 3 cut(s) 175, 823, 1228
SmiMI CAYNNNNRTG 1 cut(s) 1333
SmlI CTYRAG 2 cut(s) 827, 997
SmoI CTYRAG 2 cut(s) 827, 997
SpeI ACTAGT 1 cut(s) 1385
Sse9I AATT 7 cut(s) 496, 621, 715, 1126, 1349, 1441, 1493
SsiI CCGC 3 cut(s) 664, 1544, 1561
SspMI CTAG 2 cut(s) 920, 1386
StyD4I CCNGG 4 cut(s) 171, 259, 892, 1483
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 3 cut(s) 542, 734, 1092
TaqI TCGA 4 cut(s) 478, 505, 736, 1523
TasI AATT 7 cut(s) 496, 621, 715, 1126, 1349, 1441, 1493
TatI WGTACW 3 cut(s) 1122, 1388, 1451
TfiI GAWTC 5 cut(s) 233, 683, 1286, 1394, 1712
Tru1I TTAA 4 cut(s) 533, 630, 915, 998
Tru9I TTAA 4 cut(s) 533, 630, 915, 998
TscAI CASTG 1 cut(s) 1570
TspDTI ATGAA 6 cut(s) 114, 606, 675, 914, 1073, 1376
TspRI CASTG 1 cut(s) 1570
Van91I CCANNNNNTGG 1 cut(s) 983
Vha464I CTTAAG 1 cut(s) 997
VpaK11BI GGWCC 3 cut(s) 175, 823, 1228
XapI RAATTY 3 cut(s) 621, 715, 1349
XcmI CCANNNNNNNNNTGG 2 cut(s) 1222, 1499
XmiI GTMKAC 1 cut(s) 736
XspI CTAG 2 cut(s) 920, 1386
ZrmI AGTACT 1 cut(s) 1390
Zsp2I ATGCAT 1 cut(s) 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.