Rh6CG405800

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000509
Physical Location & Seq
Reverse (-)
59155863 .. 59165688
9826 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG405800.1

Sequence Viewer

Length: 1401 bp
ATGCCTAGCACGAGGGTTATCATCAGAAAAGAATTGTGTCCTCTTATCTGCTTCATATTTTTATTTAGCTTCTTTTTATCTTCATCTTTTGCAACAGAGACACTAACACCCGGAGACACACTTACAGTCAATCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGAGCTTGGCTTCTTCAAAAGTGACTTTTTAGGTAGTTACTATCTAGGAATTTGGTTCAGAGCCGATGCAAACAAGGTTGTTTGGGTTGGTAACCGCAGAGTTCCCATATTGGACGCTTCAGGAAGTCTTCAAATACTATCTGGGAATCTGGTTCTTATAGACCGCCGTCAAAACCCTTTGCTAGTCAGTACAGGAAATGTTGCCATGGCCATAAACGCAACCGCAACACTTCTTGACTCTGGAAATTTTATCCTTAAAGAAGAAAATACAGGTACTATGCTATGGCAAAGTTTTGATATTCCTACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCTCAGCTTAACAGTAACCAGCCAATCTTTCGCGCTTTTGTTTCTTGGGTCAACCCCCAAAATCCTGCTCTTGGCAACTTTACTTTAACCATGAACAGGATCAACTTTACAAAGCTTCAGGTCTGGCGAGGAGATAAAGTTCGAATGGATATTGGGTTTTGGGATGGACATAACCTGCGGTTTATTTTTGACAACTCAACAAGTGGAAATGACTACAATTTTAGTCACCATTCCACTGCAGATGAAGCCTACTTTAATTTTAGAGGCAATAAGAATTATGACATCGTGTGGTTTGTGATGGCTTCCACGGGAAAACTAGATCAGTATTTTATGGTGGATGGGAAGATTTTTTCTGTGAGTCATGCCCTGTGTGAAAATTCAACTGGGAGCAATTGTTCTTGCACTGCATTTGCTTCACTTCAGAATGATCAAGAATGTCAACTTTATTATGGGAGTAAGCAGGATCTATGGAAGACCATAGTAAAAGGGCCAGGGATTATTTACATCCGTGGTACTGCTGCTACAAATGGTGGTAAGAAGTGGAAACTCGGGTTAGCTCTCACAGTTTCTTTGGCTACCCTCTTGGTTCTTATTCCTTTATCCTTATGCTGCTATCTGCGTTGGAGAAAGGGACACAAAGAAGACTCAGTAACAGAAGGCATTATCAATTTGGACCAAGAGAGTTTATTCCAAAGGGCGACTAATGCGTCACCAGTTCAGCAGAATGCAGTTAGAGGTGCAAATAACGTGGAGTTAGGCAGGCAGAAGGATCAAGATCTGCCCTTGTTTAGTATTTCTACGATACAGACTGCAACAAATTACTTTGCAGAGTCTAATAAACTCGGGGAAGGTGGATTTGGGCTGTCTATAAGGCAAGGCTTCAGTTCTTGCTTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

466

Amino Acids

51.87

Weight (kDa)

8.29

Isoelectric Point (pI)

28.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 80 - 174 3.5e-26 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1207
Acc36I ACCTGC 1 cut(s) 684
AccII CGCG 1 cut(s) 534
AciI CCGC 4 cut(s) 256, 325, 384, 679
AclWI GGATC 3 cut(s) 608, 972, 1278
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 3 cut(s) 210, 406, 877
AcuI CTGAAG 4 cut(s) 264, 602, 905, 1366
AfaI GTAC 3 cut(s) 352, 436, 1015
AfiI CCNNNNNNNGG 2 cut(s) 572, 597
AgsI TTSAA 3 cut(s) 178, 293, 882
AjnI CCWGG 3 cut(s) 138, 481, 991
AjuI GAANNNNNNNTTGG 2 cut(s) 1341, 1373
AloI GAACNNNNNNTCC 4 cut(s) 624, 656, 880, 912
AluBI AGCT 6 cut(s) 69, 149, 166, 508, 616, 1058
AluI AGCT 6 cut(s) 69, 149, 166, 508, 616, 1058
Alw26I GTCTC 3 cut(s) 92, 108, 507
AlwI GGATC 3 cut(s) 608, 972, 1278
Ama87I CYCGRG 2 cut(s) 1049, 1343
AoxI GGCC 2 cut(s) 369, 989
ApeKI GCWGC 2 cut(s) 1019, 1110
ApoI RAATTY 3 cut(s) 210, 406, 877
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 2 cut(s) 989, 1174
AsuC2I CCSGG 1 cut(s) 111
AsuHPI GGTGA 2 cut(s) 719, 1203
AsuII TTCGAA 1 cut(s) 643
AvaI CYCGRG 2 cut(s) 1049, 1343
AvaII GGWCC 1 cut(s) 1174
BalI TGGCCA 1 cut(s) 371
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 3 cut(s) 281, 980, 1149
BbvI GCAGC 2 cut(s) 1006, 1097
BccI CCATC 3 cut(s) 659, 793, 833
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 3 cut(s) 140, 483, 993
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 3 cut(s) 92, 108, 507
BfaI CTAG 4 cut(s) 6, 206, 344, 818
BfmI CTRYAG 1 cut(s) 738
BfuAI ACCTGC 1 cut(s) 684
BglII AGATCT 1 cut(s) 1276
BisI GCNGC 2 cut(s) 1020, 1111
BlsI GCNGC 2 cut(s) 1021, 1112
Bme1390I CCNGG 4 cut(s) 111, 140, 483, 993
Bme18I GGWCC 1 cut(s) 1174
BmeT110I CYCGRG 2 cut(s) 1049, 1343
BmgT120I GGNCC 2 cut(s) 989, 1174
BmrFI CCNGG 4 cut(s) 111, 140, 483, 993
BmrI ACTGGG 1 cut(s) 894
BmsI GCATC 1 cut(s) 217
BmuI ACTGGG 1 cut(s) 894
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 3 cut(s) 281, 980, 1149
Bpu14I TTCGAA 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 2 cut(s) 474, 1275
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 6 cut(s) 138, 366, 482, 807, 992, 1009
BsaXI ACNNNNNCTCC 4 cut(s) 624, 654, 880, 910
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 597
Bse1I ACTGG 2 cut(s) 889, 1214
Bse8I GATNNNNATC 2 cut(s) 474, 1275
BseBI CCWGG 3 cut(s) 140, 483, 993
BseDI CCNNGG 6 cut(s) 138, 366, 482, 807, 992, 1009
BseGI GGATG 4 cut(s) 492, 670, 844, 1005
BseJI GATNNNNATC 2 cut(s) 474, 1275
BseLI CCNNNNNNNGG 2 cut(s) 572, 597
BseMII CTCAG 2 cut(s) 518, 1161
BseNI ACTGG 2 cut(s) 889, 1214
BseRI GAGGAG 1 cut(s) 645
BseXI GCAGC 2 cut(s) 1006, 1097
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 2 cut(s) 371, 991
BsiHKCI CYCGRG 2 cut(s) 1049, 1343
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 2 cut(s) 572, 597
BsmAI GTCTC 3 cut(s) 92, 108, 507
BsmFI GGGAC 1 cut(s) 1146
BsmI GAATGC 1 cut(s) 1231
BsnI GGCC 2 cut(s) 371, 991
Bso31I GGTCTC 1 cut(s) 507
BsoBI CYCGRG 2 cut(s) 1049, 1343
Bsp119I TTCGAA 1 cut(s) 643
Bsp143I GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 4 cut(s) 256, 325, 384, 679
BspANI GGCC 2 cut(s) 371, 991
BspCNI CTCAG 2 cut(s) 517, 1160
BspFNI CGCG 1 cut(s) 534
BspMAI CTGCAG 1 cut(s) 742
BspMI ACCTGC 1 cut(s) 684
BspPI GGATC 3 cut(s) 608, 972, 1278
BspT104I TTCGAA 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 507
BsrI ACTGG 2 cut(s) 889, 1214
BssECI CCNNGG 6 cut(s) 138, 366, 482, 807, 992, 1009
BssMI GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 3 cut(s) 140, 483, 993
Bst4CI ACNGT 3 cut(s) 127, 515, 1066
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 1 cut(s) 1262
BstDEI CTNAG 2 cut(s) 504, 1147
BstDSI CCRYGG 3 cut(s) 366, 807, 1009
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 4 cut(s) 492, 670, 844, 1005
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 6 cut(s) 603, 823, 931, 967, 1273, 1279
BstMAI GTCTC 3 cut(s) 92, 108, 507
BstMBI GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
BstMWI GCNNNNNNNGC 3 cut(s) 377, 746, 1205
BstNI CCWGG 3 cut(s) 140, 483, 993
BstPAI GACNNNNGTC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 4 cut(s) 109, 138, 481, 991
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 1006, 1097
BstV2I GAAGAC 3 cut(s) 281, 980, 1149
BstX2I RGATCY 2 cut(s) 964, 1276
BstYI RGATCY 2 cut(s) 964, 1276
BsuRI GGCC 2 cut(s) 371, 991
BtgI CCRYGG 3 cut(s) 366, 807, 1009
BtsCI GGATG 4 cut(s) 492, 670, 844, 1005
BtsI GCAGTG 2 cut(s) 735, 903
BtsIMutI CAGTG 2 cut(s) 735, 903
BveI ACCTGC 1 cut(s) 684
Cac8I GCNNGC 1 cut(s) 1262
CfoI GCGC 1 cut(s) 536
Cfr13I GGNCC 2 cut(s) 989, 1174
CseI GACGC 2 cut(s) 284, 1197
Csp6I GTAC 3 cut(s) 351, 435, 1014
CspCI CAANNNNNGTGG 2 cut(s) 1230, 1265
CviAII CATG 3 cut(s) 367, 592, 863
CviQI GTAC 3 cut(s) 351, 435, 1014
DdeI CTNAG 2 cut(s) 504, 1147
DpnI GATC 6 cut(s) 602, 822, 930, 966, 1272, 1278
DpnII GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
DrdI GACNNNNNNGTC 1 cut(s) 1207
DseDI GACNNNNNNGTC 1 cut(s) 1207
EaeI YGGCCR 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 366
Eco31I GGTCTC 1 cut(s) 507
Eco47I GGWCC 1 cut(s) 1174
Eco57I CTGAAG 4 cut(s) 264, 602, 905, 1366
Eco88I CYCGRG 2 cut(s) 1049, 1343
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 3 cut(s) 138, 481, 991
EcoT14I CCWWGG 1 cut(s) 366
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 3 cut(s) 370, 595, 866
FaqI GGGAC 1 cut(s) 1146
FatI CATG 3 cut(s) 366, 591, 862
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 2 cut(s) 1020, 1111
FokI GGATG 4 cut(s) 499, 677, 851, 992
Fsp4HI GCNGC 2 cut(s) 1020, 1111
FspBI CTAG 4 cut(s) 6, 206, 344, 818
GlaI GCGC 1 cut(s) 535
GluI GCNGC 2 cut(s) 1020, 1111
HaeIII GGCC 2 cut(s) 371, 991
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 284, 1197
HhaI GCGC 1 cut(s) 536
Hin1II CATG 3 cut(s) 370, 595, 866
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 2 cut(s) 553, 941
HindII GTYRAC 2 cut(s) 553, 941
HindIII AAGCTT 1 cut(s) 614
HinfI GANTC 5 cut(s) 307, 398, 859, 1145, 1331
HpaII CCGG 1 cut(s) 111
HphI GGTGA 2 cut(s) 719, 1203
Hpy166II GTNNAC 2 cut(s) 553, 941
Hpy188I TCNGA 3 cut(s) 26, 221, 924
Hpy188III TCNNGA 5 cut(s) 282, 395, 402, 932, 1274
Hpy8I GTNNAC 2 cut(s) 553, 941
HpyAV CCTTC 3 cut(s) 1151, 1261, 1343
HpyCH4III ACNGT 3 cut(s) 127, 515, 1066
HpyCH4IV ACGT 1 cut(s) 1248
HpyCH4V TGCA 9 cut(s) 92, 230, 740, 903, 908, 1229, 1241, 1313, 1328
HpyF10VI GCNNNNNNNGC 3 cut(s) 377, 746, 1205
HpyF3I CTNAG 2 cut(s) 504, 1147
HpySE526I ACGT 1 cut(s) 1248
Hsp92II CATG 3 cut(s) 370, 595, 866
HspAI GCGC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
LmnI GCTCC 1 cut(s) 888
Lsp1109I GCAGC 2 cut(s) 1006, 1097
LweI GCATC 1 cut(s) 217
MaeI CTAG 4 cut(s) 6, 206, 344, 818
MaeII ACGT 1 cut(s) 1248
MaeIII GTNAC 7 cut(s) 182, 197, 251, 515, 725, 1150, 1209
MalI GATC 6 cut(s) 602, 822, 930, 966, 1272, 1278
MboI GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
MboII GAAGA 8 cut(s) 72, 166, 281, 434, 470, 856, 985, 1154
MfeI CAATTG 1 cut(s) 892
MflI RGATCY 2 cut(s) 964, 1276
MlsI TGGCCA 1 cut(s) 371
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 4 cut(s) 392, 868, 1139, 1340
MmeI TCCRAC 1 cut(s) 1103
MnlI CCTC 6 cut(s) 6, 51, 623, 758, 1091, 1229
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 5 cut(s) 417, 510, 587, 756, 1399
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 4 cut(s) 111, 140, 483, 993
MunI CAATTG 1 cut(s) 892
Mva1269I GAATGC 1 cut(s) 1231
MvaI CCWGG 3 cut(s) 140, 483, 993
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 3 cut(s) 377, 746, 1205
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 366
NdeII GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
NlaIII CATG 3 cut(s) 370, 595, 866
NmuCI GTSAC 3 cut(s) 182, 725, 1209
NspV TTCGAA 1 cut(s) 643
PctI GAATGC 1 cut(s) 1231
PfeI GAWTC 1 cut(s) 307
PkrI GCNGC 2 cut(s) 1021, 1112
PleI GAGTC 4 cut(s) 392, 867, 1139, 1339
PpsI GAGTC 4 cut(s) 392, 867, 1139, 1339
PshAI GACNNNNGTC 1 cut(s) 327
Psp6I CCWGG 3 cut(s) 138, 481, 991
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 3 cut(s) 138, 481, 991
PspPI GGNCC 2 cut(s) 989, 1174
PstI CTGCAG 1 cut(s) 742
PsuI RGATCY 2 cut(s) 964, 1276
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 3 cut(s) 352, 436, 1015
RsaNI GTAC 3 cut(s) 351, 435, 1014
SaqAI TTAA 5 cut(s) 417, 510, 587, 756, 1399
SatI GCNGC 2 cut(s) 1020, 1111
Sau3AI GATC 6 cut(s) 600, 820, 928, 964, 1270, 1276
Sau96I GGNCC 2 cut(s) 989, 1174
SchI GAGTC 4 cut(s) 392, 868, 1139, 1340
ScrFI CCNGG 4 cut(s) 111, 140, 483, 993
SfaNI GCATC 1 cut(s) 217
SfcI CTRYAG 1 cut(s) 738
SfuI TTCGAA 1 cut(s) 643
SinI GGWCC 1 cut(s) 1174
SsiI CCGC 4 cut(s) 256, 325, 384, 679
SspMI CTAG 4 cut(s) 6, 206, 344, 818
StyD4I CCNGG 4 cut(s) 109, 138, 481, 991
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 127, 515, 1066
TaiI ACGT 1 cut(s) 1251
TaqI TCGA 2 cut(s) 162, 643
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 5 cut(s) 417, 510, 587, 756, 1399
Tru9I TTAA 5 cut(s) 417, 510, 587, 756, 1399
TscAI CASTG 2 cut(s) 742, 910
TseFI GTSAC 3 cut(s) 182, 725, 1209
TseI GCWGC 2 cut(s) 1019, 1110
Tsp45I GTSAC 3 cut(s) 182, 725, 1209
TspDTI ATGAA 5 cut(s) 43, 72, 503, 608, 759
TspGWI ACGGA 1 cut(s) 998
TspRI CASTG 2 cut(s) 742, 910
VpaK11BI GGWCC 1 cut(s) 1174
XapI RAATTY 3 cut(s) 210, 406, 877
XspI CTAG 4 cut(s) 6, 206, 344, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.