Rmu_ssc0000289.1_g000040

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0000509
Physical Location & Seq
Reverse (-)
239403 .. 241858
2456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000040.1.cds

Sequence Viewer

Length: 1350 bp
atggttgactcgcttagattttactgcataatatgttctgatagccggcatgcttcaaatcctgtctgggaatttggttctcacagaccgtcgacaagtgcaattgatagtcaacacaggaagtcagggagtcttgccagagtcacagctaacacaagtgcaacacttcttgacaccggtaactttgtccttaaggaaacagatatttcgtttttatctcttgcaacagatactcttacaccttcagacacattgagagatggtcaaatcctgttgagagccgatgcaagcaaggttatctgggttgatcgcgataatcctatattggattcatcaggcatgcttcaaatcctgtctggaaatttggttctcgctgaccgtcgacaagtacagttgatagtcaactcagggagtcttgccagagtcacagctaacacaagtgcaacacttcttgacaccggtaactttgtccttaaggaaacagatacaggtactaaaatatggcaaagttttgatataccgactgatacttatcttcctgggatggaacttgggttctttggcctaaacacatctcgggtaagctttcacattcttatttcttgggcaagaccccaaaacccagaccttggcctcttcactttaagcattgataggaacaacaccacaaagcttttggttaggcgaaaagatggagcaaaaatggaaatcggtttctggaatggaaatggcatccggtttatttttgggaactcatctgctgggaatatgtacgattttagcttccagtccaatgcaaatgaagcggtttacacttttactaccagtaagaattatgaccttgtgtggtttgtgatgagttacatgggaaacctggaccagaattttatggtagataggaagatctcttctttcagtcatgctttgtgtgaggattcggctggtggtaatactgggacatgctttagttcaataccatctaactgtggcaatggtgatagcttttttcagatgaatggtttgctgccatctacatttaatagcactggttccgtaaatatggcgattactgattgtgaaactttctgcaagaacaattgttcttgtacagcatttgcttcagttcagaatggtcaaccaggatgtcaactatactatgggagtaaggaggagctattgaagatcatagagaagggagaagggcttatatacattcgccgtggtgctccaagtgatgttaaaaagtggaaactctggttggctgttgtggttcccttggcttccctcttggttcttataccaatctccatagcctgctatttgtgctggagaaagcgactgaaaggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

449

Amino Acids

49.48

Weight (kDa)

7.47

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 629
AccI GTMKAC 2 cut(s) 92, 382
AccII CGCG 1 cut(s) 312
AciI CCGC 1 cut(s) 806
AcsI RAATTY 3 cut(s) 71, 361, 883
AcuI CTGAAG 2 cut(s) 228, 1104
AfaI GTAC 4 cut(s) 390, 493, 773, 1108
AfiI CCNNNNNNNGG 1 cut(s) 629
AflII CTTAAG 2 cut(s) 191, 473
AgeI ACCGGT 2 cut(s) 176, 458
AgsI TTSAA 4 cut(s) 57, 347, 972, 1180
AjnI CCWGG 3 cut(s) 538, 873, 1138
AjuI GAANNNNNNNTTGG 2 cut(s) 1241, 1273
AloI GAACNNNNNNTCC 4 cut(s) 351, 383, 539, 571
AluBI AGCT 7 cut(s) 149, 431, 585, 673, 783, 1002, 1174
AluI AGCT 7 cut(s) 149, 431, 585, 673, 783, 1002, 1174
Alw21I GWGCWC 1 cut(s) 1228
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 2 cut(s) 562, 631
ApeKI GCWGC 1 cut(s) 1024
ApoI RAATTY 3 cut(s) 71, 361, 883
AsiGI ACCGGT 2 cut(s) 176, 458
AspS9I GGNCC 1 cut(s) 877
AsuHPI GGTGA 1 cut(s) 1007
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 1 cut(s) 877
Bbv12I GWGCWC 1 cut(s) 1228
BbvI GCAGC 1 cut(s) 1011
BccI CCATC 5 cut(s) 254, 538, 686, 985, 1036
BceAI ACGGC 1 cut(s) 1203
BciT130I CCWGG 3 cut(s) 540, 875, 1140
BfrI CTTAAG 2 cut(s) 191, 473
BglII AGATCT 1 cut(s) 903
BisI GCNGC 1 cut(s) 1025
BlsI GCNGC 1 cut(s) 1026
Bme1390I CCNGG 3 cut(s) 540, 875, 1140
Bme18I GGWCC 1 cut(s) 877
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 877
BmiI GGNNCC 2 cut(s) 1051, 1272
BmrFI CCNGG 3 cut(s) 540, 875, 1140
BmrI ACTGGG 1 cut(s) 963
BmsI GCATC 2 cut(s) 274, 741
BmuI ACTGGG 1 cut(s) 963
BpmI CTGGAG 1 cut(s) 1348
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 4 cut(s) 539, 628, 1219, 1275
BsaWI WCCGGW 3 cut(s) 176, 458, 735
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse118I RCCGGY 3 cut(s) 45, 176, 458
Bse1I ACTGG 4 cut(s) 787, 825, 958, 1051
Bse3DI GCAATG 1 cut(s) 997
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 3 cut(s) 540, 875, 1140
BseDI CCNNGG 4 cut(s) 539, 628, 1219, 1275
BseGI GGATG 3 cut(s) 549, 732, 1148
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMI GCAATG 1 cut(s) 997
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 4 cut(s) 787, 825, 958, 1051
BseRI GAGGAG 1 cut(s) 1184
BseXI GCAGC 1 cut(s) 1011
BseYI CCCAGC 1 cut(s) 761
Bsh1236I CGCG 1 cut(s) 312
BshFI GGCC 2 cut(s) 564, 633
BshTI ACCGGT 2 cut(s) 176, 458
BsiHKAI GWGCWC 1 cut(s) 1228
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 4 cut(s) 46, 177, 459, 736
BslFI GGGAC 1 cut(s) 970
BslI CCNNNNNNNGG 1 cut(s) 629
BsmFI GGGAC 1 cut(s) 970
BsnI GGCC 2 cut(s) 564, 633
BsoBI CYCGRG 1 cut(s) 576
Bsp1286I GDGCHC 1 cut(s) 1228
Bsp1407I TGTACA 1 cut(s) 1106
Bsp143I GATC 3 cut(s) 307, 903, 1182
Bsp68I TCGCGA 1 cut(s) 312
BspACI CCGC 1 cut(s) 806
BspANI GGCC 2 cut(s) 564, 633
BspCNI CTCAG 1 cut(s) 419
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 2 cut(s) 1051, 1272
BspTI CTTAAG 2 cut(s) 191, 473
BsrDI GCAATG 1 cut(s) 997
BsrFI RCCGGY 3 cut(s) 45, 176, 458
BsrGI TGTACA 1 cut(s) 1106
BsrI ACTGG 4 cut(s) 787, 825, 958, 1051
BssAI RCCGGY 3 cut(s) 45, 176, 458
BssECI CCNNGG 4 cut(s) 539, 628, 1219, 1275
BssMI GATC 3 cut(s) 307, 903, 1182
BssT1I CCWWGG 2 cut(s) 628, 1275
Bst2UI CCWGG 3 cut(s) 540, 875, 1140
Bst4CI ACNGT 4 cut(s) 90, 380, 393, 986
Bst6I CTCTTC 2 cut(s) 641, 913
BstAFI CTTAAG 2 cut(s) 191, 473
BstAUI TGTACA 1 cut(s) 1106
BstC8I GCNNGC 5 cut(s) 47, 51, 289, 341, 1315
BstDEI CTNAG 2 cut(s) 14, 406
BstDSI CCRYGG 1 cut(s) 1219
BstF5I GGATG 3 cut(s) 549, 732, 1148
BstFNI CGCG 1 cut(s) 312
BstKTI GATC 3 cut(s) 310, 906, 1185
BstMBI GATC 3 cut(s) 307, 903, 1182
BstMWI GCNNNNNNNGC 2 cut(s) 803, 1323
BstNI CCWGG 3 cut(s) 540, 875, 1140
BstNSI RCATGY 3 cut(s) 53, 343, 963
BstSCI CCNGG 3 cut(s) 538, 873, 1138
BstUI CGCG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 1011
BstX2I RGATCY 1 cut(s) 903
BstYI RGATCY 1 cut(s) 903
BsuRI GGCC 2 cut(s) 564, 633
BtgI CCRYGG 1 cut(s) 1219
BtsCI GGATG 3 cut(s) 549, 732, 1148
BtsIMutI CAGTG 1 cut(s) 1044
BtuMI TCGCGA 1 cut(s) 312
Cac8I GCNNGC 5 cut(s) 47, 51, 289, 341, 1315
Cfr10I RCCGGY 3 cut(s) 45, 176, 458
Cfr13I GGNCC 1 cut(s) 877
Csp6I GTAC 4 cut(s) 389, 492, 772, 1107
CspAI ACCGGT 2 cut(s) 176, 458
CviAII CATG 5 cut(s) 50, 340, 865, 920, 960
CviQI GTAC 4 cut(s) 389, 492, 772, 1107
DdeI CTNAG 2 cut(s) 14, 406
DpnI GATC 3 cut(s) 309, 905, 1184
DpnII GATC 3 cut(s) 307, 903, 1182
Eam1104I CTCTTC 2 cut(s) 641, 913
EarI CTCTTC 2 cut(s) 641, 913
Eco130I CCWWGG 2 cut(s) 628, 1275
Eco47I GGWCC 1 cut(s) 877
Eco57I CTGAAG 2 cut(s) 228, 1104
Eco88I CYCGRG 1 cut(s) 576
EcoRII CCWGG 3 cut(s) 538, 873, 1138
EcoT14I CCWWGG 2 cut(s) 628, 1275
ErhI CCWWGG 2 cut(s) 628, 1275
FaeI CATG 5 cut(s) 53, 343, 868, 923, 963
FaqI GGGAC 1 cut(s) 970
FatI CATG 5 cut(s) 49, 339, 864, 919, 959
FblI GTMKAC 2 cut(s) 92, 382
Fnu4HI GCNGC 1 cut(s) 1025
FokI GGATG 3 cut(s) 556, 719, 1155
Fsp4HI GCNGC 1 cut(s) 1025
GluI GCNGC 1 cut(s) 1025
GsaI CCCAGC 1 cut(s) 765
GsuI CTGGAG 1 cut(s) 1348
HaeIII GGCC 2 cut(s) 564, 633
HapII CCGG 4 cut(s) 46, 177, 459, 736
Hin1II CATG 5 cut(s) 53, 343, 868, 923, 963
HincII GTYRAC 7 cut(s) 7, 93, 113, 383, 403, 1136, 1148
HindII GTYRAC 7 cut(s) 7, 93, 113, 383, 403, 1136, 1148
HindIII AAGCTT 2 cut(s) 583, 671
HinfI GANTC 7 cut(s) 8, 130, 141, 329, 412, 423, 935
HpaII CCGG 4 cut(s) 46, 177, 459, 736
HphI GGTGA 1 cut(s) 1007
Hpy166II GTNNAC 8 cut(s) 7, 93, 113, 383, 403, 811, 1136, 1148
Hpy188I TCNGA 4 cut(s) 40, 247, 1011, 1128
Hpy188III TCNNGA 5 cut(s) 170, 311, 357, 452, 718
Hpy8I GTNNAC 8 cut(s) 7, 93, 113, 383, 403, 811, 1136, 1148
Hpy99I CGWCG 2 cut(s) 94, 384
HpyAV CCTTC 3 cut(s) 252, 1186, 1193
HpyCH4III ACNGT 4 cut(s) 90, 380, 393, 986
HpyCH4V TGCA 8 cut(s) 27, 101, 161, 224, 287, 443, 797, 1089
HpyF10VI GCNNNNNNNGC 2 cut(s) 803, 1323
HpyF3I CTNAG 2 cut(s) 14, 406
Hsp92II CATG 5 cut(s) 53, 343, 868, 923, 963
KroI GCCGGC 1 cut(s) 45
KroNI GCCGGC 1 cut(s) 47
Kzo9I GATC 3 cut(s) 307, 903, 1182
LmnI GCTCC 3 cut(s) 695, 1171, 1231
Lsp1109I GCAGC 1 cut(s) 1011
LweI GCATC 2 cut(s) 274, 741
MaeIII GTNAC 5 cut(s) 142, 179, 424, 461, 860
MalI GATC 3 cut(s) 309, 905, 1184
MboI GATC 3 cut(s) 307, 903, 1182
MboII GAAGA 5 cut(s) 527, 628, 900, 913, 1192
MfeI CAATTG 2 cut(s) 102, 1096
MflI RGATCY 1 cut(s) 903
MhlI GDGCHC 1 cut(s) 1228
MluCI AATT 6 cut(s) 71, 102, 361, 832, 883, 1096
MlyI GAGTC 5 cut(s) 2, 139, 150, 421, 432
MnlI CCTC 4 cut(s) 644, 925, 1162, 1295
MroNI GCCGGC 1 cut(s) 45
MseI TTAA 5 cut(s) 192, 474, 644, 1038, 1239
MspCI CTTAAG 2 cut(s) 191, 473
MspI CCGG 4 cut(s) 46, 177, 459, 736
MspR9I CCNGG 3 cut(s) 540, 875, 1140
MunI CAATTG 2 cut(s) 102, 1096
MvaI CCWGG 3 cut(s) 540, 875, 1140
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 2 cut(s) 803, 1323
NaeI GCCGGC 1 cut(s) 47
NdeII GATC 3 cut(s) 307, 903, 1182
NgoMIV GCCGGC 1 cut(s) 45
NlaIII CATG 5 cut(s) 53, 343, 868, 923, 963
NlaIV GGNNCC 2 cut(s) 1051, 1272
NmuCI GTSAC 2 cut(s) 142, 424
NruI TCGCGA 1 cut(s) 312
NspI RCATGY 3 cut(s) 53, 343, 963
PaeI GCATGC 2 cut(s) 53, 343
PdiI GCCGGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 329, 935
PflMI CCANNNNNTGG 1 cut(s) 629
PinAI ACCGGT 2 cut(s) 176, 458
PkrI GCNGC 1 cut(s) 1026
PleI GAGTC 5 cut(s) 2, 138, 149, 420, 431
PpsI GAGTC 5 cut(s) 2, 138, 149, 420, 431
Psp6I CCWGG 3 cut(s) 538, 873, 1138
PspFI CCCAGC 1 cut(s) 761
PspGI CCWGG 3 cut(s) 538, 873, 1138
PspN4I GGNNCC 2 cut(s) 1051, 1272
PspPI GGNCC 1 cut(s) 877
PsuI RGATCY 1 cut(s) 903
RruI TCGCGA 1 cut(s) 312
RsaI GTAC 4 cut(s) 390, 493, 773, 1108
RsaNI GTAC 4 cut(s) 389, 492, 772, 1107
SalI GTCGAC 2 cut(s) 91, 381
SaqAI TTAA 5 cut(s) 192, 474, 644, 1038, 1239
SatI GCNGC 1 cut(s) 1025
Sau3AI GATC 3 cut(s) 307, 903, 1182
Sau96I GGNCC 1 cut(s) 877
SchI GAGTC 5 cut(s) 2, 139, 150, 421, 432
ScrFI CCNGG 3 cut(s) 540, 875, 1140
SduI GDGCHC 1 cut(s) 1228
SfaNI GCATC 2 cut(s) 274, 741
SinI GGWCC 1 cut(s) 877
SmlI CTYRAG 2 cut(s) 191, 473
SmoI CTYRAG 2 cut(s) 191, 473
SphI GCATGC 2 cut(s) 53, 343
Sse9I AATT 6 cut(s) 71, 102, 361, 832, 883, 1096
SsiI CCGC 1 cut(s) 806
StyD4I CCNGG 3 cut(s) 538, 873, 1138
StyI CCWWGG 2 cut(s) 628, 1275
TaaI ACNGT 4 cut(s) 90, 380, 393, 986
TaqI TCGA 2 cut(s) 92, 382
TasI AATT 6 cut(s) 71, 102, 361, 832, 883, 1096
TatI WGTACW 2 cut(s) 388, 1106
TfiI GAWTC 2 cut(s) 329, 935
Tru1I TTAA 5 cut(s) 192, 474, 644, 1038, 1239
Tru9I TTAA 5 cut(s) 192, 474, 644, 1038, 1239
TscAI CASTG 1 cut(s) 1051
TseFI GTSAC 2 cut(s) 142, 424
TseI GCWGC 1 cut(s) 1024
Tsp45I GTSAC 2 cut(s) 142, 424
TspDTI ATGAA 3 cut(s) 321, 816, 1028
TspGWI ACGGA 1 cut(s) 1042
TspRI CASTG 1 cut(s) 1051
Van91I CCANNNNNTGG 1 cut(s) 629
Vha464I CTTAAG 2 cut(s) 191, 473
VpaK11BI GGWCC 1 cut(s) 877
XapI RAATTY 3 cut(s) 71, 361, 883
XceI RCATGY 3 cut(s) 53, 343, 963
XcmI CCANNNNNNNNNTGG 1 cut(s) 673
XmiI GTMKAC 2 cut(s) 92, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.