Rmu_ssc0000289.1_g000039

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000289.1
OG0000509
Physical Location & Seq
Reverse (-)
235347 .. 236516
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000289.1_g000039.1.cds

Sequence Viewer

Length: 1170 bp
atggttcttcttgttattgtcttgatatcatttcttagcttcttttcattttcatctcttgcaacagacacacttacaccttcagatgcattaagagacagtcaaaccctggtttcagctggtggagttttcgtgcttggctttttcaatgaaagctcttcaggttattactatctgggaatttggttcaaagctgatgcaaacaaggttgtctgggttgaccgcgaaaatcccataatggattcatctggcctgcttcaaatccggtctgggaatttggttctcacagaccgtcgacaagtgctactgatagtcaactcaggaaatcttgccaccactacaactaatacaagtgcaacacttcttgatactggaaacttggtcctaaaggaagcagttacaggtactactatatggcagagttttgatataccaactgatacttatcttcctgggatgaagattgggttatttaacctaaacacaacccagcagacctttcacattcttgtttcttgggcaagccctcaaaatccaaatcgtggcttatttaccttaagcattgatgccaacgatcacacaaggatttcggtttggcgaggagatggagctaagatgaatatcggtttctgggaaggaaatggcttaaggtttatttttgagaactcaactgagaatttgtacaattttagcttccagtccaatcaatctgaagccttctacacttttagcacaccgaagaactacgacctcatgtggtttgtgatggcttccacaggaacactggaccagtataatatgttggatgggaagatttctaatgtgagtcattctttgtgtgaagattcaaatggtggaaatactgggaggtgcttgacttcactaccatctatgtgtgatgatggtaaattttctgagatgaatggtttactaccatctaacactagtactgatttgatcattgtatggactgctgattgtgaaacgctgtgcaaaaacaattgttcttgtactgcatatacttcacttcacaatggacaaccaggatgccaactttattatgggagcagacaaaatctatcaaagatcatagagaagggcgcaggggttatttacatccgcagtggtgcttcaactggtaagtctaaaattctgaactcatgtagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

389

Amino Acids

42.7

Weight (kDa)

5.13

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AccI GTMKAC 1 cut(s) 295
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 223, 1120
AcsI RAATTY 5 cut(s) 180, 274, 676, 908, 1149
AcuI CTGAAG 3 cut(s) 66, 144, 732
AfaI GTAC 4 cut(s) 406, 683, 949, 1012
AfiI CCNNNNNNNGG 1 cut(s) 542
AflII CTTAAG 2 cut(s) 556, 646
AgsI TTSAA 5 cut(s) 148, 190, 260, 849, 1134
AhlI ACTAGT 1 cut(s) 944
AjnI CCWGG 3 cut(s) 108, 451, 1042
AluBI AGCT 6 cut(s) 39, 119, 156, 194, 611, 693
AluI AGCT 6 cut(s) 39, 119, 156, 194, 611, 693
Alw26I GTCTC 1 cut(s) 90
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 5 cut(s) 180, 274, 676, 908, 1149
AspLEI GCGC 1 cut(s) 1103
AspS9I GGNCC 2 cut(s) 382, 787
AvaII GGWCC 2 cut(s) 382, 787
BccI CCATC 6 cut(s) 599, 760, 800, 895, 896, 943
BciT130I CCWGG 3 cut(s) 110, 453, 1044
BclI TGATCA 1 cut(s) 957
BcoDI GTCTC 1 cut(s) 90
BcuI ACTAGT 1 cut(s) 944
BfaI CTAG 1 cut(s) 945
BfrI CTTAAG 2 cut(s) 556, 646
BmcAI AGTACT 1 cut(s) 949
Bme1390I CCNGG 3 cut(s) 110, 453, 1044
Bme18I GGWCC 2 cut(s) 382, 787
BmgT120I GGNCC 2 cut(s) 382, 787
BmrFI CCNGG 3 cut(s) 110, 453, 1044
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 4 cut(s) 76, 187, 556, 1037
BmuI ACTGGG 1 cut(s) 873
BsaBI GATNNNNATC 2 cut(s) 444, 620
BsaJI CCNNGG 2 cut(s) 108, 452
BsaWI WCCGGW 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 6 cut(s) 376, 697, 789, 790, 868, 1141
Bse8I GATNNNNATC 2 cut(s) 444, 620
BseBI CCWGG 3 cut(s) 110, 453, 1044
BseDI CCNNGG 2 cut(s) 108, 452
BseGI GGATG 4 cut(s) 462, 811, 1052, 1116
BseJI GATNNNNATC 2 cut(s) 444, 620
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMII CTCAG 3 cut(s) 333, 663, 906
BseNI ACTGG 6 cut(s) 376, 697, 789, 790, 868, 1141
BseRI GAGGAG 1 cut(s) 615
BseYI CCCAGC 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 90
BsnI GGCC 1 cut(s) 252
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 3 cut(s) 574, 957, 1086
BspACI CCGC 2 cut(s) 223, 1120
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 3 cut(s) 332, 664, 907
BspFNI CGCG 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 163
BspTI CTTAAG 2 cut(s) 556, 646
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 6 cut(s) 376, 697, 789, 790, 868, 1141
BssECI CCNNGG 2 cut(s) 108, 452
BssMI GATC 3 cut(s) 574, 957, 1086
Bst2UI CCWGG 3 cut(s) 110, 453, 1044
Bst4CI ACNGT 2 cut(s) 101, 293
Bst6I CTCTTC 1 cut(s) 163
BstAFI CTTAAG 2 cut(s) 556, 646
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 2 cut(s) 254, 523
BstDEI CTNAG 5 cut(s) 35, 319, 612, 672, 915
BstF5I GGATG 4 cut(s) 462, 811, 1052, 1116
BstFNI CGCG 1 cut(s) 225
BstHHI GCGC 1 cut(s) 1103
BstKTI GATC 3 cut(s) 577, 960, 1089
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 3 cut(s) 574, 957, 1086
BstNI CCWGG 3 cut(s) 110, 453, 1044
BstSCI CCNGG 3 cut(s) 108, 451, 1042
BstUI CGCG 1 cut(s) 225
BsuRI GGCC 1 cut(s) 252
BtsCI GGATG 4 cut(s) 462, 811, 1052, 1116
BtsI GCAGTG 1 cut(s) 1129
BtsIMutI CAGTG 2 cut(s) 782, 1129
Cac8I GCNNGC 2 cut(s) 254, 523
CfoI GCGC 1 cut(s) 1103
Cfr13I GGNCC 2 cut(s) 382, 787
Csp6I GTAC 4 cut(s) 405, 682, 948, 1011
CviAII CATG 2 cut(s) 754, 1161
CviQI GTAC 4 cut(s) 405, 682, 948, 1011
DdeI CTNAG 5 cut(s) 35, 319, 612, 672, 915
DpnI GATC 3 cut(s) 576, 959, 1088
DpnII GATC 3 cut(s) 574, 957, 1086
Eam1104I CTCTTC 1 cut(s) 163
EarI CTCTTC 1 cut(s) 163
Eco32I GATATC 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 382, 787
Eco57I CTGAAG 3 cut(s) 66, 144, 732
EcoRII CCWGG 3 cut(s) 108, 451, 1042
EcoRV GATATC 1 cut(s) 27
EcoT22I ATGCAT 1 cut(s) 91
FaeI CATG 2 cut(s) 757, 1164
FatI CATG 2 cut(s) 753, 1160
FbaI TGATCA 1 cut(s) 957
FblI GTMKAC 1 cut(s) 295
FokI GGATG 4 cut(s) 469, 818, 1059, 1103
FspBI CTAG 1 cut(s) 945
GlaI GCGC 1 cut(s) 1102
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 1 cut(s) 252
HapII CCGG 1 cut(s) 265
HhaI GCGC 1 cut(s) 1103
Hin1II CATG 2 cut(s) 757, 1164
Hin6I GCGC 1 cut(s) 1101
HinP1I GCGC 1 cut(s) 1101
HincII GTYRAC 3 cut(s) 220, 296, 316
HindII GTYRAC 3 cut(s) 220, 296, 316
HinfI GANTC 3 cut(s) 242, 826, 845
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 4 cut(s) 220, 296, 316, 929
Hpy188I TCNGA 4 cut(s) 85, 712, 916, 1155
Hpy188III TCNNGA 3 cut(s) 22, 321, 365
Hpy8I GTNNAC 4 cut(s) 220, 296, 316, 929
Hpy99I CGWCG 1 cut(s) 297
HpyAV CCTTC 4 cut(s) 90, 629, 727, 1090
HpyCH4III ACNGT 2 cut(s) 101, 293
HpyCH4V TGCA 6 cut(s) 62, 89, 200, 356, 993, 1016
HpyF3I CTNAG 5 cut(s) 35, 319, 612, 672, 915
Hsp92II CATG 2 cut(s) 757, 1164
HspAI GCGC 1 cut(s) 1101
Ksp22I TGATCA 1 cut(s) 957
Kzo9I GATC 3 cut(s) 574, 957, 1086
LguI GCTCTTC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 608, 1065
LweI GCATC 4 cut(s) 76, 187, 556, 1037
MaeI CTAG 1 cut(s) 945
MaeIII GTNAC 1 cut(s) 397
MalI GATC 3 cut(s) 576, 959, 1088
MboI GATC 3 cut(s) 574, 957, 1086
MboII GAAGA 6 cut(s) 150, 440, 472, 751, 823, 854
MfeI CAATTG 1 cut(s) 1000
MluCI AATT 7 cut(s) 180, 274, 676, 685, 908, 1000, 1149
MlyI GAGTC 1 cut(s) 835
MmeI TCCRAC 1 cut(s) 783
MnlI CCTC 4 cut(s) 537, 593, 761, 861
Mph1103I ATGCAT 1 cut(s) 91
MseI TTAA 4 cut(s) 92, 474, 557, 647
MslI CAYNNNNRTG 1 cut(s) 892
MspA1I CMGCKG 1 cut(s) 119
MspCI CTTAAG 2 cut(s) 556, 646
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 3 cut(s) 110, 453, 1044
MunI CAATTG 1 cut(s) 1000
MvaI CCWGG 3 cut(s) 110, 453, 1044
MvnI CGCG 1 cut(s) 225
NdeII GATC 3 cut(s) 574, 957, 1086
NlaIII CATG 2 cut(s) 757, 1164
NsiI ATGCAT 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 242, 845
PflMI CCANNNNNTGG 1 cut(s) 542
PleI GAGTC 1 cut(s) 834
PpsI GAGTC 1 cut(s) 834
Psp6I CCWGG 3 cut(s) 108, 451, 1042
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 3 cut(s) 108, 451, 1042
PspPI GGNCC 2 cut(s) 382, 787
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 4 cut(s) 406, 683, 949, 1012
RsaNI GTAC 4 cut(s) 405, 682, 948, 1011
RseI CAYNNNNRTG 1 cut(s) 892
SalI GTCGAC 1 cut(s) 294
SapI GCTCTTC 1 cut(s) 163
SaqAI TTAA 4 cut(s) 92, 474, 557, 647
Sau3AI GATC 3 cut(s) 574, 957, 1086
Sau96I GGNCC 2 cut(s) 382, 787
ScaI AGTACT 1 cut(s) 949
SchI GAGTC 1 cut(s) 835
ScrFI CCNGG 3 cut(s) 110, 453, 1044
SfaNI GCATC 4 cut(s) 76, 187, 556, 1037
SinI GGWCC 2 cut(s) 382, 787
SmiMI CAYNNNNRTG 1 cut(s) 892
SmlI CTYRAG 2 cut(s) 556, 646
SmoI CTYRAG 2 cut(s) 556, 646
SpeI ACTAGT 1 cut(s) 944
Sse9I AATT 7 cut(s) 180, 274, 676, 685, 908, 1000, 1149
SsiI CCGC 2 cut(s) 223, 1120
SspMI CTAG 1 cut(s) 945
StyD4I CCNGG 3 cut(s) 108, 451, 1042
TaaI ACNGT 2 cut(s) 101, 293
TaqI TCGA 1 cut(s) 295
TasI AATT 7 cut(s) 180, 274, 676, 685, 908, 1000, 1149
TatI WGTACW 3 cut(s) 681, 947, 1010
TfiI GAWTC 2 cut(s) 242, 845
Tru1I TTAA 4 cut(s) 92, 474, 557, 647
Tru9I TTAA 4 cut(s) 92, 474, 557, 647
TscAI CASTG 2 cut(s) 789, 1129
TspDTI ATGAA 7 cut(s) 36, 42, 165, 234, 473, 632, 935
TspRI CASTG 2 cut(s) 789, 1129
Van91I CCANNNNNTGG 1 cut(s) 542
Vha464I CTTAAG 2 cut(s) 556, 646
VpaK11BI GGWCC 2 cut(s) 382, 787
XapI RAATTY 5 cut(s) 180, 274, 676, 908, 1149
XcmI CCANNNNNNNNNTGG 2 cut(s) 781, 1058
XmiI GTMKAC 1 cut(s) 295
XspI CTAG 1 cut(s) 945
ZrmI AGTACT 1 cut(s) 949
Zsp2I ATGCAT 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.