Rh6BG399400

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000509
Physical Location & Seq
Reverse (-)
62704336 .. 62712484
8149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG399400.1

Sequence Viewer

Length: 2712 bp
ATGGCCATATTTCTTCCTCTAATTTGCTTGATATTATCATTCTTTAGCTTCTTTTCGTTTTCATCTCTTGCAACAGATACTCTTACACCTTCAGACACATTGAGAGATGGTCAAATCCTGGTTTCAGCTGGTGGAGTTTTTGAGCTGGGCTTGTTCAATGAAAGCTTTTCAGGCTATCACTATCTGGGAATTTGGTTGAGAGCCGATGCAAGCAAGGTTGTCTGGGTTGATCGCGATAATCCTATATTGGATTCATCAGGCATGCTTCAAATCCTGTCTGGAAATTTGGTTCTCGCTGACCGTCGACAAGTACAATTGATAGTCAACTCAGGGAGTCTTGCCAGAGTCACAGCTAACACAAGTGCAACACTTCTTGACACCGGTAACTTTGTCCTTAAGGAAACAGATACAGGAACTAAAATATGGCAAAGTTTTGATATACCGACTGATACTTATCTTCCTGGGATGGAACTTGGGTTCTTTGGCCTAAACACATCTCGGGTAAGCTTTCACATTCTTATTTCTTGGGCAAGCCCCCAAAACCCAGACCTTGGCCTCTTCACTTTAAGCATTGATAGGAACAACACCACAAAGCTTTTGGTTAGGCGAAAAGATGGAGCAAGAATGGAAATCGGTTTCTGGAATGGAAATGGCATCCGTTTTATTTTTGAGAACTCATCTGCTGGGAATATGTACGATTTTAGCTTCCAGTCCAATGCAAATGAATCTGTTTACACTTTTACTACCAGTAAGACTTATGACCTTGTGTGGTTTGTGATGAGTTACATGGGAAACCTGGACCAGTATTTTATGGTAGATGGGAAGATCTCTTCTTTGAGTCATGCTTTGTGTGAGGATTCGGCTGGTGGTAATACTGGGACATGCTTTAGTTCAATACCTTCTAACTGTGGCAATGGTGATAGCTTTTTTCAGATGAATGGTTTGCTGCCATCTACATTTAATAGCACTGGTTCCGTAAATATGGCGATTACTGATTGTGAAACTTTCTGCAAGAACAATTGTTCTTGTACAGCATTTGCTTCAGTTCAGAATGGTCAACCAGGATGTCAACTATACTATGGGAGTAAGCAGGAGCTATTGAAGATCATAGAGAAGGGAGAAGGGCTTATATACATTCGCCGTGGTGCTCCAAGTGATGCTAAAAAGTGGAAACTCTGGTTGACTGTTGTGGTTCCCTTGGCCTCCCTCTTGGTTCTTATACCAATCTCCATAGCCTGCTATTTGCGCTGGAGAAAGCGACTGAAAGACACACTTACACCTTCAGACACATTAAGAGACAGTCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGTGCTTGGCTTATTCAATGAAAGCTCTTCAGGTTATTACTATCTGGGAATTTGGCTTAAAGCTGATGCAGACAACGTTGTCTGGGTTGACCGCGAAAACCCCATATTGGATTCATCTGGCCTGCTTCAAATCCGGTCTGGGAATTTGGTTCTCACAGACCGTCGACAAGTGCTACTGATAGTCAACTCAGGAAATCTTGCCACCACTACAACTAACACAAGTGCAACACTTCTTGATACTGGAAACTTGGTCCTCAAGGAAGCAGCTACAGGTACTATCATATGGCAGAGTTTTGATATTCCAACTGACACTTATCTTCCTGGGATGAAGATTGGGTTATTTGGCCTAAACACAACCCAGCAGACCTTTCGCATTCTTGTTTCTTGGGCAAGCCCTCAAAATCCAACTCGTGGCCTATTTACCTTAAGCATTGATGCCAACGACCACACAAGGATTTCGGTTTGGCGAGGAGATGGAGCTAAGATGAATATCGGTTTCTGGGAAGGAAATGGCTTAAGGTTTATTTTTGAGAACTCAACTGAGAATATGTACAATTTTAGCTTCCAGTCCAATCAATCTGAAGCCTTCTACACTTTTAGCACACCGAAGAACTACGACCTCATGTGGTTTGTGATGGCTTCCACAGGAACGCTGGACCAGTATAATATGTTGGATGGGAAGATTTCTAATGTAAGTCATGCTTTGTGTGAAGATTCAAATGGTGGAAATACTGGGAGGTGCTTGACTTCGCTACCATCTATGTGTGATGATGGTAAATTTTCTGAGATGAATGGTTTACTACCATCTAACACTAGTACTGATTCCATCATTGTATGGACTGCTGATTGTGAAACGCTGTGCAAAAACAATTGTTCTTGTACTGCATATACTTCACTTCACAATGGACAACCAGGATGTCAACTTTATTATGGGAGCAGACAAAATCTATCAAAGATCATAGAGAAGGGCGCGGGGGTTATTTACATCCGCAGTGATGCTTCAACTGATGATAAGAAGTGGAAGCTCTGGTTGTCTATAGCAGTTCCTTTGGCTTCCCTCTTGATTTCTATTTCAATCTCCTTCTTCTGGTATATGTGTTGCAGAAGGAAACATAAAGAAGATCAAGTAACCAGACGAGAATCTGATCAAGCAAGGTTATTCCAAATGTGCTCCAATGATGCATCACCAATACAACTTGATGAAGTTAGAAGTGCAAATAACATGGAATTAGGCAGACGGAAGGACCAAGATCTACCCTTCTTTAGTTTTTCTGCAATAAAGACTGCAACAGATTACTTCGCAGAGGCTAATAAACTTGGGGAAGGTGGATATGGGCCTGTATATAAGGTAAGGCTTCAGTTCCCTGCTTTACATTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

903

Amino Acids

100.12

Weight (kDa)

5.52

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 73 - 161 5e-22 D-mannose binding lectin
PAN_2 PF08276 303 - 359 7.3e-07 PAN-like domain
B_lectin PF01453 470 - 573 1.6e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1409
AccB7I CCANNNNNTGG 2 cut(s) 551, 1742
AccI GTMKAC 2 cut(s) 304, 1495
AccII CGCG 3 cut(s) 234, 1425, 2303
AciI CCGC 3 cut(s) 1423, 2303, 2320
AclI AACGTT 1 cut(s) 1407
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 189, 283, 1380, 1474, 2108
AcuI CTGAAG 6 cut(s) 75, 1026, 1266, 1344, 1932, 2672
AfaI GTAC 7 cut(s) 312, 695, 1030, 1606, 1883, 2149, 2212
AfiI CCNNNNNNNGG 4 cut(s) 551, 1438, 1742, 2418
AflII CTTAAG 3 cut(s) 395, 1756, 1846
AgeI ACCGGT 1 cut(s) 380
AgsI TTSAA 9 cut(s) 157, 269, 894, 1102, 1348, 1460, 2049, 2334, 2406
AhlI ACTAGT 1 cut(s) 2144
AjnI CCWGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
AloI GAACNNNNNNTCC 4 cut(s) 273, 305, 461, 493
Alw21I GWGCWC 2 cut(s) 1150, 2504
Alw26I GTCTC 1 cut(s) 1290
Ama87I CYCGRG 1 cut(s) 498
AoxI GGCC 8 cut(s) 3, 484, 553, 1200, 1450, 1675, 1744, 2666
ApeKI GCWGC 2 cut(s) 946, 1595
ApoI RAATTY 5 cut(s) 189, 283, 1380, 1474, 2108
AsiGI ACCGGT 1 cut(s) 380
AspLEI GCGC 2 cut(s) 1248, 2303
AspS9I GGNCC 5 cut(s) 799, 1582, 1987, 2575, 2666
AsuHPI GGTGA 2 cut(s) 929, 2508
AvaI CYCGRG 1 cut(s) 498
AvaII GGWCC 4 cut(s) 799, 1582, 1987, 2575
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 1740
Bbv12I GWGCWC 2 cut(s) 1150, 2504
BbvI GCAGC 2 cut(s) 933, 1607
BceAI ACGGC 1 cut(s) 1125
BcgI CGANNNNNNTGC 2 cut(s) 1682, 1716
BciT130I CCWGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
BclI TGATCA 1 cut(s) 2476
BcoDI GTCTC 1 cut(s) 1290
BcuI ACTAGT 1 cut(s) 2144
BfaI CTAG 1 cut(s) 2145
BfmI CTRYAG 2 cut(s) 1599, 2367
BfrI CTTAAG 3 cut(s) 395, 1756, 1846
BglII AGATCT 2 cut(s) 825, 2581
BisI GCNGC 2 cut(s) 947, 1596
BlsI GCNGC 2 cut(s) 948, 1597
BmcAI AGTACT 1 cut(s) 2149
Bme1390I CCNGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
Bme18I GGWCC 4 cut(s) 799, 1582, 1987, 2575
BmeT110I CYCGRG 1 cut(s) 498
BmgT120I GGNCC 5 cut(s) 799, 1582, 1987, 2575, 2666
BmiI GGNNCC 2 cut(s) 973, 1194
BmrFI CCNGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
BmrI ACTGGG 2 cut(s) 885, 2073
BmsI GCATC 8 cut(s) 196, 663, 1147, 1387, 1756, 2317, 2500, 2522
BmuI ACTGGG 2 cut(s) 885, 2073
BpmI CTGGAG 1 cut(s) 1270
BpuEI CTTGAG 1 cut(s) 1571
BsaBI GATNNNNATC 2 cut(s) 453, 1820
BsaJI CCNNGG 6 cut(s) 461, 550, 1141, 1197, 1308, 1652
BsaWI WCCGGW 2 cut(s) 380, 1464
BsaXI ACNNNNNCTCC 2 cut(s) 1317, 1347
Bsc4I CCNNNNNNNGG 4 cut(s) 551, 1438, 1742, 2418
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 9 cut(s) 709, 747, 802, 880, 973, 1576, 1897, 1990, 2068
Bse3DI GCAATG 2 cut(s) 919, 2704
Bse8I GATNNNNATC 2 cut(s) 453, 1820
BseBI CCWGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
BseDI CCNNGG 6 cut(s) 461, 550, 1141, 1197, 1308, 1652
BseGI GGATG 7 cut(s) 471, 654, 1070, 1662, 2011, 2252, 2316
BseJI GATNNNNATC 2 cut(s) 453, 1820
BseLI CCNNNNNNNGG 4 cut(s) 551, 1438, 1742, 2418
BseMI GCAATG 2 cut(s) 919, 2704
BseMII CTCAG 4 cut(s) 342, 1533, 1863, 2106
BseNI ACTGG 9 cut(s) 709, 747, 802, 880, 973, 1576, 1897, 1990, 2068
BseRI GAGGAG 1 cut(s) 1815
BseXI GCAGC 2 cut(s) 933, 1607
BseYI CCCAGC 3 cut(s) 145, 683, 1689
Bsh1236I CGCG 3 cut(s) 234, 1425, 2303
BshFI GGCC 8 cut(s) 5, 486, 555, 1202, 1452, 1677, 1746, 2668
BshTI ACCGGT 1 cut(s) 380
BsiHKAI GWGCWC 2 cut(s) 1150, 2504
BsiHKCI CYCGRG 1 cut(s) 498
BsiSI CCGG 2 cut(s) 381, 1465
BslFI GGGAC 1 cut(s) 892
BslI CCNNNNNNNGG 4 cut(s) 551, 1438, 1742, 2418
BsmAI GTCTC 1 cut(s) 1290
BsmFI GGGAC 1 cut(s) 892
BsmI GAATGC 1 cut(s) 1704
BsnI GGCC 8 cut(s) 5, 486, 555, 1202, 1452, 1677, 1746, 2668
BsoBI CYCGRG 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 1150, 2504
Bsp1407I TGTACA 2 cut(s) 1028, 1881
Bsp143I GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
Bsp68I TCGCGA 1 cut(s) 234
BspACI CCGC 3 cut(s) 1423, 2303, 2320
BspANI GGCC 8 cut(s) 5, 486, 555, 1202, 1452, 1677, 1746, 2668
BspCNI CTCAG 4 cut(s) 341, 1532, 1864, 2107
BspFNI CGCG 3 cut(s) 234, 1425, 2303
BspLI GGNNCC 2 cut(s) 973, 1194
BspQI GCTCTTC 1 cut(s) 1363
BspTI CTTAAG 3 cut(s) 395, 1756, 1846
BsrDI GCAATG 2 cut(s) 919, 2704
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 2 cut(s) 1028, 1881
BsrI ACTGG 9 cut(s) 709, 747, 802, 880, 973, 1576, 1897, 1990, 2068
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 6 cut(s) 461, 550, 1141, 1197, 1308, 1652
BssMI GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
BssSI CACGAG 1 cut(s) 1740
BssT1I CCWWGG 2 cut(s) 550, 1197
Bst2BI CACGAG 1 cut(s) 1740
Bst2UI CCWGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
Bst4CI ACNGT 5 cut(s) 302, 908, 1186, 1301, 1493
Bst6I CTCTTC 3 cut(s) 563, 835, 1363
BstAFI CTTAAG 3 cut(s) 395, 1756, 1846
BstAUI TGTACA 2 cut(s) 1028, 1881
BstC8I GCNNGC 6 cut(s) 211, 263, 532, 1237, 1454, 1723
BstDEI CTNAG 5 cut(s) 328, 1519, 1812, 1872, 2115
BstDSI CCRYGG 1 cut(s) 1141
BstF5I GGATG 7 cut(s) 471, 654, 1070, 1662, 2011, 2252, 2316
BstFNI CGCG 3 cut(s) 234, 1425, 2303
BstHHI GCGC 2 cut(s) 1248, 2303
BstKTI GATC 7 cut(s) 232, 828, 1107, 2289, 2455, 2479, 2584
BstMAI GTCTC 1 cut(s) 1290
BstMBI GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
BstMWI GCNNNNNNNGC 2 cut(s) 171, 1245
BstNI CCWGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
BstNSI RCATGY 2 cut(s) 265, 885
BstSCI CCNGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
BstSFI CTRYAG 2 cut(s) 1599, 2367
BstUI CGCG 3 cut(s) 234, 1425, 2303
BstV1I GCAGC 2 cut(s) 933, 1607
BstX2I RGATCY 2 cut(s) 825, 2581
BstYI RGATCY 2 cut(s) 825, 2581
BsuRI GGCC 8 cut(s) 5, 486, 555, 1202, 1452, 1677, 1746, 2668
BtgI CCRYGG 1 cut(s) 1141
BtsCI GGATG 7 cut(s) 471, 654, 1070, 1662, 2011, 2252, 2316
BtsI GCAGTG 1 cut(s) 2329
BtsIMutI CAGTG 2 cut(s) 966, 2329
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 6 cut(s) 211, 263, 532, 1237, 1454, 1723
CfoI GCGC 2 cut(s) 1248, 2303
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 5 cut(s) 799, 1582, 1987, 2575, 2666
Csp6I GTAC 7 cut(s) 311, 694, 1029, 1605, 1882, 2148, 2211
CspAI ACCGGT 1 cut(s) 380
CviAII CATG 7 cut(s) 262, 787, 842, 882, 1954, 2030, 2554
CviQI GTAC 7 cut(s) 311, 694, 1029, 1605, 1882, 2148, 2211
DdeI CTNAG 5 cut(s) 328, 1519, 1812, 1872, 2115
DpnI GATC 7 cut(s) 231, 827, 1106, 2288, 2454, 2478, 2583
DpnII GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
DrdI GACNNNNNNGTC 1 cut(s) 1409
DseDI GACNNNNNNGTC 1 cut(s) 1409
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 563, 835, 1363
EarI CTCTTC 3 cut(s) 563, 835, 1363
Eco130I CCWWGG 2 cut(s) 550, 1197
Eco47I GGWCC 4 cut(s) 799, 1582, 1987, 2575
Eco57I CTGAAG 6 cut(s) 75, 1026, 1266, 1344, 1932, 2672
Eco88I CYCGRG 1 cut(s) 498
EcoRII CCWGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
EcoT14I CCWWGG 2 cut(s) 550, 1197
EcoT22I ATGCAT 1 cut(s) 2515
ErhI CCWWGG 2 cut(s) 550, 1197
FaeI CATG 7 cut(s) 265, 790, 845, 885, 1957, 2033, 2557
FalI AAGNNNNNCTT 4 cut(s) 1257, 1289, 2017, 2049
FaqI GGGAC 1 cut(s) 892
FatI CATG 7 cut(s) 261, 786, 841, 881, 1953, 2029, 2553
FauI CCCGC 1 cut(s) 2296
FauNDI CATATG 1 cut(s) 1613
FbaI TGATCA 1 cut(s) 2476
FblI GTMKAC 2 cut(s) 304, 1495
Fnu4HI GCNGC 2 cut(s) 947, 1596
FokI GGATG 7 cut(s) 478, 641, 1077, 1669, 2018, 2259, 2303
Fsp4HI GCNGC 2 cut(s) 947, 1596
FspBI CTAG 1 cut(s) 2145
GlaI GCGC 2 cut(s) 1247, 2302
GluI GCNGC 2 cut(s) 947, 1596
GsaI CCCAGC 3 cut(s) 149, 687, 1693
GsuI CTGGAG 1 cut(s) 1270
HaeIII GGCC 8 cut(s) 5, 486, 555, 1202, 1452, 1677, 1746, 2668
HapII CCGG 2 cut(s) 381, 1465
HhaI GCGC 2 cut(s) 1248, 2303
Hin1II CATG 7 cut(s) 265, 790, 845, 885, 1957, 2033, 2557
Hin6I GCGC 2 cut(s) 1246, 2301
HinP1I GCGC 2 cut(s) 1246, 2301
HincII GTYRAC 9 cut(s) 305, 325, 1058, 1070, 1182, 1420, 1496, 1516, 2252
HindII GTYRAC 9 cut(s) 305, 325, 1058, 1070, 1182, 1420, 1496, 1516, 2252
HindIII AAGCTT 3 cut(s) 163, 505, 593
HpaII CCGG 2 cut(s) 381, 1465
HphI GGTGA 2 cut(s) 929, 2508
Hpy188I TCNGA 7 cut(s) 94, 933, 1050, 1285, 1912, 2116, 2476
Hpy188III TCNNGA 7 cut(s) 233, 279, 374, 640, 1521, 1565, 2392
Hpy99I CGWCG 2 cut(s) 306, 1497
HpyCH4III ACNGT 5 cut(s) 302, 908, 1186, 1301, 1493
HpyCH4IV ACGT 1 cut(s) 1407
HpyF10VI GCNNNNNNNGC 2 cut(s) 171, 1245
HpyF3I CTNAG 5 cut(s) 328, 1519, 1812, 1872, 2115
HpySE526I ACGT 1 cut(s) 1407
Hsp92II CATG 7 cut(s) 265, 790, 845, 885, 1957, 2033, 2557
HspAI GCGC 2 cut(s) 1246, 2301
Ksp22I TGATCA 1 cut(s) 2476
Kzo9I GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
LguI GCTCTTC 1 cut(s) 1363
LmnI GCTCC 6 cut(s) 617, 1093, 1153, 1808, 2265, 2507
Lsp1109I GCAGC 2 cut(s) 933, 1607
LweI GCATC 8 cut(s) 196, 663, 1147, 1387, 1756, 2317, 2500, 2522
MaeI CTAG 1 cut(s) 2145
MaeII ACGT 1 cut(s) 1407
MaeIII GTNAC 4 cut(s) 346, 383, 782, 2458
MalI GATC 7 cut(s) 231, 827, 1106, 2288, 2454, 2478, 2583
MboI GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
MfeI CAATTG 3 cut(s) 314, 1018, 2200
MflI RGATCY 2 cut(s) 825, 2581
MhlI GDGCHC 2 cut(s) 1150, 2504
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 343, 354, 847
MmeI TCCRAC 3 cut(s) 1658, 1760, 1983
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 2515
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 396, 566, 960, 1292, 1389, 1757, 1847
MslI CAYNNNNRTG 1 cut(s) 2092
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 128, 1319
MspCI CTTAAG 3 cut(s) 395, 1756, 1846
MspI CCGG 2 cut(s) 381, 1465
MspR9I CCNGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
MunI CAATTG 3 cut(s) 314, 1018, 2200
Mva1269I GAATGC 1 cut(s) 1704
MvaI CCWGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
MvnI CGCG 3 cut(s) 234, 1425, 2303
MwoI GCNNNNNNNGC 2 cut(s) 171, 1245
NdeI CATATG 1 cut(s) 1613
NdeII GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
NlaIII CATG 7 cut(s) 265, 790, 845, 885, 1957, 2033, 2557
NlaIV GGNNCC 2 cut(s) 973, 1194
NmuCI GTSAC 1 cut(s) 346
NruI TCGCGA 1 cut(s) 234
NsiI ATGCAT 1 cut(s) 2515
NspI RCATGY 2 cut(s) 265, 885
PaeI GCATGC 1 cut(s) 265
PciSI GCTCTTC 1 cut(s) 1363
PctI GAATGC 1 cut(s) 1704
PfeI GAWTC 7 cut(s) 251, 725, 857, 1442, 2045, 2153, 2471
PflMI CCANNNNNTGG 2 cut(s) 551, 1742
PinAI ACCGGT 1 cut(s) 380
PkrI GCNGC 2 cut(s) 948, 1597
PleI GAGTC 3 cut(s) 342, 353, 846
PpsI GAGTC 3 cut(s) 342, 353, 846
Psp1406I AACGTT 1 cut(s) 1407
Psp6I CCWGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
PspFI CCCAGC 3 cut(s) 145, 683, 1689
PspGI CCWGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
PspN4I GGNNCC 2 cut(s) 973, 1194
PspPI GGNCC 5 cut(s) 799, 1582, 1987, 2575, 2666
PsuI RGATCY 2 cut(s) 825, 2581
PvuII CAGCTG 2 cut(s) 128, 1319
RruI TCGCGA 1 cut(s) 234
RsaI GTAC 7 cut(s) 312, 695, 1030, 1606, 1883, 2149, 2212
RsaNI GTAC 7 cut(s) 311, 694, 1029, 1605, 1882, 2148, 2211
RseI CAYNNNNRTG 1 cut(s) 2092
SalI GTCGAC 2 cut(s) 303, 1494
SapI GCTCTTC 1 cut(s) 1363
SaqAI TTAA 7 cut(s) 396, 566, 960, 1292, 1389, 1757, 1847
SatI GCNGC 2 cut(s) 947, 1596
Sau3AI GATC 7 cut(s) 229, 825, 1104, 2286, 2452, 2476, 2581
Sau96I GGNCC 5 cut(s) 799, 1582, 1987, 2575, 2666
ScaI AGTACT 1 cut(s) 2149
SchI GAGTC 3 cut(s) 343, 354, 847
ScrFI CCNGG 7 cut(s) 119, 462, 797, 1062, 1310, 1653, 2244
SduI GDGCHC 2 cut(s) 1150, 2504
SfaNI GCATC 8 cut(s) 196, 663, 1147, 1387, 1756, 2317, 2500, 2522
SfcI CTRYAG 2 cut(s) 1599, 2367
SinI GGWCC 4 cut(s) 799, 1582, 1987, 2575
SmiMI CAYNNNNRTG 1 cut(s) 2092
SmlI CTYRAG 4 cut(s) 395, 1586, 1756, 1846
SmoI CTYRAG 4 cut(s) 395, 1586, 1756, 1846
SpeI ACTAGT 1 cut(s) 2144
SphI GCATGC 1 cut(s) 265
SsiI CCGC 3 cut(s) 1423, 2303, 2320
SspMI CTAG 1 cut(s) 2145
StyD4I CCNGG 7 cut(s) 117, 460, 795, 1060, 1308, 1651, 2242
StyI CCWWGG 2 cut(s) 550, 1197
TaaI ACNGT 5 cut(s) 302, 908, 1186, 1301, 1493
TaiI ACGT 1 cut(s) 1410
TaqI TCGA 2 cut(s) 304, 1495
TatI WGTACW 5 cut(s) 310, 1028, 1881, 2147, 2210
TfiI GAWTC 7 cut(s) 251, 725, 857, 1442, 2045, 2153, 2471
Tru1I TTAA 7 cut(s) 396, 566, 960, 1292, 1389, 1757, 1847
Tru9I TTAA 7 cut(s) 396, 566, 960, 1292, 1389, 1757, 1847
TscAI CASTG 2 cut(s) 973, 2329
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 2 cut(s) 946, 1595
Tsp45I GTSAC 1 cut(s) 346
TspGWI ACGGA 3 cut(s) 647, 964, 2584
TspRI CASTG 2 cut(s) 973, 2329
Van91I CCANNNNNTGG 2 cut(s) 551, 1742
Vha464I CTTAAG 3 cut(s) 395, 1756, 1846
VpaK11BI GGWCC 4 cut(s) 799, 1582, 1987, 2575
XapI RAATTY 5 cut(s) 189, 283, 1380, 1474, 2108
XceI RCATGY 2 cut(s) 265, 885
XcmI CCANNNNNNNNNTGG 2 cut(s) 595, 1981
XmiI GTMKAC 2 cut(s) 304, 1495
XspI CTAG 1 cut(s) 2145
ZrmI AGTACT 1 cut(s) 2149
Zsp2I ATGCAT 1 cut(s) 2515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.