Rh6CG405500

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000509
Physical Location & Seq
Reverse (-)
59122513 .. 59126159
3647 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG405500.1

Sequence Viewer

Length: 1311 bp
ATGACCACAAAAGTTTTCTCAATCAGAGGTTGGGCATCTGTTTTCACATCTGGGCTCTTTTTCATTTTACAAGACACACTTACACCTTCAGACACATTAAGAGACAGTCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGTGCTTGGCTTTTTCAATGAAAGCTCTTCAGGTTATTACTATCTGGGAATTTGGTTCAAAGCTGATGTAAACAAGGTTGTCTGGGTTGACCGCGAAAATCCCATAATGGATTCATCTGGCCTGCTTCAAATCCGGTCTGGGAATTTGGTTCTCACAGACCGTCGACAGGTGCTACTGATAGTCAACTCAGGAAATCTTGCCACCACTACAACTAATACAAGTGCAACGCTTCTTGATACTGGAAATTTGGTCCTCAAGGAAGCAGTTACAGGTACTACTATATGGCAGAGTTTTGATATACCAACTGATACTTATCTTCCTGGGATGAAGATTGGGTTATTTAACCTAAACACAACCCAGCAGACCTTTCACATTCTTGTTTCTTGGGCAAGCCCTCAAAATCCAACTCGTGGCCTATTTACCTTAAGCATTGATGCCAACGATCACACAAGGATTTCGGTTTGGCGAGGAGATGGAGCTAAGATGAATATCGGTTTCTGGGAAGGAAATGGCTTAAGGTTTATTTTTGAGAACTCAACTGAGAATTTGTACAATTTTAGCTTCCAGTCCAATCAATCTGAAGCCTTCTACACTTTTAGCACACCGAAGAACTACGACCTCATGTGGTTTGTGATGGCTTCCACAGGAACGCTGGACCAGTATAATATGTTGGATGGGAAGATTTCTAATGTGAGTCATGCTTTGTGTGAAGATTCAAATGGTGGAAATACTGGGAGGTGCTTGACTTCGCTACCATCTATGTGTGATGATGGTAAATTTTCTGAGATGAATGGTTTACTACCATCTAACACTAGTACTGATTCCATCATTGTATGGACTGCTGATTGTGAAACGCTGTGCAAAAACAATTGTTCTTGTACTGCATATACTTCACTTAACAATGGACAACCAGGATGCCAACTTTATTATGGGAGCAGGCAAAATCTATCAAAGATCATAGAGAAGGGCACGGGGGTTATTTACATCCGCAGTGGTGCTTCAACTGATGATAAGAAGTGGAAGCTCTGGTTGTCTATCGCAGTTCCTTTGGCTTCCCTCTTGATTTCTATTTCAATCTCCTTCTTCTGGTATATGCGTTGCAGAAGGAAACATAAAGGTTTGAGTTTAGTTGTTTTTAAGTCCAATCTTTGCTTACGTAATTGTTTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

436

Amino Acids

48.48

Weight (kDa)

7.46

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 72 - 175 1.8e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 548
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 231
AciI CCGC 2 cut(s) 229, 1126
AcsI RAATTY 5 cut(s) 186, 280, 382, 682, 914
AcuI CTGAAG 3 cut(s) 72, 150, 738
AfaI GTAC 4 cut(s) 412, 689, 955, 1018
AfiI CCNNNNNNNGG 3 cut(s) 304, 548, 1224
AflII CTTAAG 2 cut(s) 562, 652
AgsI TTSAA 6 cut(s) 154, 196, 266, 855, 1140, 1212
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 3 cut(s) 114, 457, 1048
AluBI AGCT 6 cut(s) 125, 162, 200, 617, 699, 1162
AluI AGCT 6 cut(s) 125, 162, 200, 617, 699, 1162
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 2 cut(s) 256, 550
ApoI RAATTY 5 cut(s) 186, 280, 382, 682, 914
AspS9I GGNCC 2 cut(s) 388, 793
AvaII GGWCC 2 cut(s) 388, 793
BaeGI GKGCMC 1 cut(s) 1109
BanII GRGCYC 1 cut(s) 57
BauI CACGAG 1 cut(s) 546
BccI CCATC 7 cut(s) 605, 766, 806, 901, 902, 949, 971
BciT130I CCWGG 3 cut(s) 116, 459, 1050
BcoDI GTCTC 1 cut(s) 96
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 1 cut(s) 951
BfrI CTTAAG 2 cut(s) 562, 652
BmcAI AGTACT 1 cut(s) 955
Bme1390I CCNGG 3 cut(s) 116, 459, 1050
Bme18I GGWCC 2 cut(s) 388, 793
BmgT120I GGNCC 2 cut(s) 388, 793
BmrFI CCNGG 3 cut(s) 116, 459, 1050
BmrI ACTGGG 1 cut(s) 879
BmsI GCATC 3 cut(s) 44, 562, 1043
BmuI ACTGGG 1 cut(s) 879
BpuEI CTTGAG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 1295
BsaBI GATNNNNATC 2 cut(s) 450, 626
BsaJI CCNNGG 2 cut(s) 114, 458
BsaWI WCCGGW 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 548, 1224
Bse1I ACTGG 4 cut(s) 382, 703, 796, 874
Bse8I GATNNNNATC 2 cut(s) 450, 626
BseBI CCWGG 3 cut(s) 116, 459, 1050
BseDI CCNNGG 2 cut(s) 114, 458
BseGI GGATG 4 cut(s) 468, 817, 1058, 1122
BseJI GATNNNNATC 2 cut(s) 450, 626
BseLI CCNNNNNNNGG 3 cut(s) 304, 548, 1224
BseMII CTCAG 3 cut(s) 339, 669, 912
BseNI ACTGG 4 cut(s) 382, 703, 796, 874
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 1109
BseYI CCCAGC 1 cut(s) 495
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 2 cut(s) 258, 552
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 3 cut(s) 304, 548, 1224
BsmAI GTCTC 1 cut(s) 96
BsnI GGCC 2 cut(s) 258, 552
Bsp1286I GDGCHC 2 cut(s) 57, 1109
Bsp1407I TGTACA 1 cut(s) 687
Bsp143I GATC 2 cut(s) 580, 1092
BspACI CCGC 2 cut(s) 229, 1126
BspANI GGCC 2 cut(s) 258, 552
BspCNI CTCAG 3 cut(s) 338, 670, 913
BspFNI CGCG 1 cut(s) 231
BspQI GCTCTTC 1 cut(s) 169
BspTI CTTAAG 2 cut(s) 562, 652
BsrGI TGTACA 1 cut(s) 687
BsrI ACTGG 4 cut(s) 382, 703, 796, 874
BssECI CCNNGG 2 cut(s) 114, 458
BssMI GATC 2 cut(s) 580, 1092
BssSI CACGAG 1 cut(s) 546
Bst2BI CACGAG 1 cut(s) 546
Bst2UI CCWGG 3 cut(s) 116, 459, 1050
Bst4CI ACNGT 2 cut(s) 107, 299
Bst6I CTCTTC 1 cut(s) 169
BstAFI CTTAAG 2 cut(s) 562, 652
BstAUI TGTACA 1 cut(s) 687
BstBAI YACGTR 1 cut(s) 1295
BstC8I GCNNGC 3 cut(s) 260, 529, 1076
BstDEI CTNAG 4 cut(s) 325, 618, 678, 921
BstF5I GGATG 4 cut(s) 468, 817, 1058, 1122
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 2 cut(s) 583, 1095
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 2 cut(s) 580, 1092
BstNI CCWGG 3 cut(s) 116, 459, 1050
BstSCI CCNGG 3 cut(s) 114, 457, 1048
BstSLI GKGCMC 1 cut(s) 1109
BstSNI TACGTA 1 cut(s) 1295
BstUI CGCG 1 cut(s) 231
BsuRI GGCC 2 cut(s) 258, 552
BtsCI GGATG 4 cut(s) 468, 817, 1058, 1122
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 1 cut(s) 1135
Cac8I GCNNGC 3 cut(s) 260, 529, 1076
Cfr13I GGNCC 2 cut(s) 388, 793
Csp6I GTAC 4 cut(s) 411, 688, 954, 1017
CviAII CATG 2 cut(s) 760, 836
CviQI GTAC 4 cut(s) 411, 688, 954, 1017
DdeI CTNAG 4 cut(s) 325, 618, 678, 921
DpnI GATC 2 cut(s) 582, 1094
DpnII GATC 2 cut(s) 580, 1092
DraI TTTAAA 1 cut(s) 1305
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco105I TACGTA 1 cut(s) 1295
Eco24I GRGCYC 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 388, 793
Eco57I CTGAAG 3 cut(s) 72, 150, 738
EcoRII CCWGG 3 cut(s) 114, 457, 1048
EcoT38I GRGCYC 1 cut(s) 57
FaeI CATG 2 cut(s) 763, 839
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 2 cut(s) 759, 835
FblI GTMKAC 1 cut(s) 301
FokI GGATG 4 cut(s) 475, 824, 1065, 1109
FriOI GRGCYC 1 cut(s) 57
FspBI CTAG 1 cut(s) 951
GsaI CCCAGC 1 cut(s) 499
HaeIII GGCC 2 cut(s) 258, 552
HapII CCGG 1 cut(s) 271
Hin1II CATG 2 cut(s) 763, 839
HincII GTYRAC 3 cut(s) 226, 302, 322
HindII GTYRAC 3 cut(s) 226, 302, 322
HinfI GANTC 4 cut(s) 248, 832, 851, 959
HpaII CCGG 1 cut(s) 271
Hpy166II GTNNAC 5 cut(s) 208, 226, 302, 322, 935
Hpy188I TCNGA 4 cut(s) 26, 91, 718, 922
Hpy188III TCNNGA 3 cut(s) 327, 371, 1198
Hpy8I GTNNAC 5 cut(s) 208, 226, 302, 322, 935
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 6 cut(s) 96, 635, 733, 1096, 1228, 1236
HpyCH4III ACNGT 2 cut(s) 107, 299
HpyCH4IV ACGT 1 cut(s) 1294
HpyCH4V TGCA 4 cut(s) 362, 999, 1022, 1239
HpyF3I CTNAG 4 cut(s) 325, 618, 678, 921
HpySE526I ACGT 1 cut(s) 1294
Hsp92II CATG 2 cut(s) 763, 839
Kzo9I GATC 2 cut(s) 580, 1092
LguI GCTCTTC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 614, 1071
LweI GCATC 3 cut(s) 44, 562, 1043
MaeI CTAG 1 cut(s) 951
MaeII ACGT 1 cut(s) 1294
MaeIII GTNAC 1 cut(s) 403
MalI GATC 2 cut(s) 582, 1094
MboI GATC 2 cut(s) 580, 1092
MboII GAAGA 7 cut(s) 156, 446, 478, 757, 829, 860, 1213
MfeI CAATTG 1 cut(s) 1006
MhlI GDGCHC 2 cut(s) 57, 1109
MluCI AATT 8 cut(s) 186, 280, 382, 682, 691, 914, 1006, 1297
MlyI GAGTC 1 cut(s) 841
MmeI TCCRAC 2 cut(s) 566, 789
MnlI CCTC 7 cut(s) 20, 401, 543, 599, 767, 867, 1205
MseI TTAA 7 cut(s) 98, 480, 563, 653, 1035, 1275, 1304
MslI CAYNNNNRTG 1 cut(s) 898
MspA1I CMGCKG 1 cut(s) 125
MspCI CTTAAG 2 cut(s) 562, 652
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 3 cut(s) 116, 459, 1050
MssI GTTTAAAC 1 cut(s) 1305
MunI CAATTG 1 cut(s) 1006
MvaI CCWGG 3 cut(s) 116, 459, 1050
MvnI CGCG 1 cut(s) 231
NdeII GATC 2 cut(s) 580, 1092
NlaIII CATG 2 cut(s) 763, 839
PciSI GCTCTTC 1 cut(s) 169
PfeI GAWTC 3 cut(s) 248, 851, 959
PflMI CCANNNNNTGG 1 cut(s) 548
PleI GAGTC 1 cut(s) 840
PmeI GTTTAAAC 1 cut(s) 1305
PpsI GAGTC 1 cut(s) 840
Ppu21I YACGTR 1 cut(s) 1295
Psp6I CCWGG 3 cut(s) 114, 457, 1048
PspFI CCCAGC 1 cut(s) 495
PspGI CCWGG 3 cut(s) 114, 457, 1048
PspPI GGNCC 2 cut(s) 388, 793
PvuII CAGCTG 1 cut(s) 125
RsaI GTAC 4 cut(s) 412, 689, 955, 1018
RsaNI GTAC 4 cut(s) 411, 688, 954, 1017
RseI CAYNNNNRTG 1 cut(s) 898
SalI GTCGAC 1 cut(s) 300
SapI GCTCTTC 1 cut(s) 169
SaqAI TTAA 7 cut(s) 98, 480, 563, 653, 1035, 1275, 1304
Sau3AI GATC 2 cut(s) 580, 1092
Sau96I GGNCC 2 cut(s) 388, 793
ScaI AGTACT 1 cut(s) 955
SchI GAGTC 1 cut(s) 841
ScrFI CCNGG 3 cut(s) 116, 459, 1050
SduI GDGCHC 2 cut(s) 57, 1109
SfaNI GCATC 3 cut(s) 44, 562, 1043
SinI GGWCC 2 cut(s) 388, 793
SmiMI CAYNNNNRTG 1 cut(s) 898
SmlI CTYRAG 3 cut(s) 392, 562, 652
SmoI CTYRAG 3 cut(s) 392, 562, 652
SnaBI TACGTA 1 cut(s) 1295
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 8 cut(s) 186, 280, 382, 682, 691, 914, 1006, 1297
SsiI CCGC 2 cut(s) 229, 1126
SspMI CTAG 1 cut(s) 951
StyD4I CCNGG 3 cut(s) 114, 457, 1048
TaaI ACNGT 2 cut(s) 107, 299
TaiI ACGT 1 cut(s) 1297
TaqI TCGA 1 cut(s) 301
TasI AATT 8 cut(s) 186, 280, 382, 682, 691, 914, 1006, 1297
TatI WGTACW 3 cut(s) 687, 953, 1016
TfiI GAWTC 3 cut(s) 248, 851, 959
Tru1I TTAA 7 cut(s) 98, 480, 563, 653, 1035, 1275, 1304
Tru9I TTAA 7 cut(s) 98, 480, 563, 653, 1035, 1275, 1304
TscAI CASTG 1 cut(s) 1135
TspDTI ATGAA 6 cut(s) 52, 171, 240, 479, 638, 941
TspRI CASTG 1 cut(s) 1135
Van91I CCANNNNNTGG 1 cut(s) 548
Vha464I CTTAAG 2 cut(s) 562, 652
VpaK11BI GGWCC 2 cut(s) 388, 793
XapI RAATTY 5 cut(s) 186, 280, 382, 682, 914
XcmI CCANNNNNNNNNTGG 2 cut(s) 787, 1064
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 1 cut(s) 951
ZrmI AGTACT 1 cut(s) 955
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.