Rh6BG399500

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000509
Physical Location & Seq
Reverse (-)
62725435 .. 62726990
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG399500.1

Sequence Viewer

Length: 687 bp
ATGATCTCCACATCTGGGTTCTTTTGGAAAGCAAAAGCTGGTAGGATTTTTGAGCTTGGCTTCTTCAGTGATGACTTTTCAGGCAATTATTATATTGGCATTTGGTTCAAAGCCGATAAGAACAAGGTTGTCTGGGTTGGTAACCGCGAAATTCCCATATCAGATTCCTCAGGTATTCTTCAAATACGATCTGGGAATCTGGTTTTCATGGACAGACGTCAAGTTCCTTGGCTACTCAATTCTGAAAATGTTGCCACGGCCATAAACACAACTGCAACACTTCTTGATTCAGGAAATTTTGTCCTTAAAGAAGAATATACAGGTACTGTTCTATGGCAAAGTTTTGATAATCCAACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCGGCACTAAACACTAACCAACCAAGCTTTCACCTTTTTGTTTCTTGGGTAAGCCCCCAAAGCCCTACTCGTGGCCTTTTCACCTTAACCATGGATAGGATCAACTTTACAAAGATTCAGGTTTGGCGAGGAGATAAAGTTCGAATGGATATTGGGTTTTGGGATGGACATAACCTGCGGTTTATTTTTGACAACTCAACAAGTGGAAATGACTACAATTTTAGTCACCATTCCACTGCAGATGAAGCTACTTTAATTTTAGTGGCAATAAGAATTATGACATTGTGTGGTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

6.41

Isoelectric Point (pI)

26.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 43 - 136 7.5e-28 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 220
Acc36I ACCTGC 1 cut(s) 573
AccII CGCG 1 cut(s) 147
AciI CCGC 2 cut(s) 145, 568
AclWI GGATC 1 cut(s) 497
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 150, 295
AcuI CTGAAG 1 cut(s) 49
AcyI GRCGYC 1 cut(s) 217
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 3 cut(s) 15, 461, 486
AgsI TTSAA 2 cut(s) 109, 182
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 2 cut(s) 402, 434
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 4 cut(s) 38, 55, 417, 638
AluI AGCT 4 cut(s) 38, 55, 417, 638
AlwI GGATC 1 cut(s) 497
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 2 cut(s) 258, 463
ApoI RAATTY 2 cut(s) 150, 295
AsuHPI GGTGA 3 cut(s) 413, 463, 608
AsuII TTCGAA 1 cut(s) 532
AxyI CCTNAGG 1 cut(s) 169
BauI CACGAG 1 cut(s) 459
BccI CCATC 1 cut(s) 548
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 372
BfmI CTRYAG 1 cut(s) 627
BfuAI ACCTGC 1 cut(s) 573
Bme1390I CCNGG 1 cut(s) 372
BmrFI CCNGG 1 cut(s) 372
BoxI GACNNNNGTC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 532
BsaBI GATNNNNATC 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 217
BsaJI CCNNGG 4 cut(s) 227, 255, 371, 480
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 461, 486
Bse21I CCTNAGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 363
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 4 cut(s) 227, 255, 371, 480
BseGI GGATG 2 cut(s) 381, 559
BseJI GATNNNNATC 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 15, 461, 486
BseMII CTCAG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 534
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 260, 465
BslI CCNNNNNNNGG 3 cut(s) 15, 461, 486
BsnI GGCC 2 cut(s) 260, 465
Bsp119I TTCGAA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 3, 188, 489
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 2 cut(s) 145, 568
BspANI GGCC 2 cut(s) 260, 465
BspCNI CTCAG 1 cut(s) 182
BspFNI CGCG 1 cut(s) 147
BspMAI CTGCAG 1 cut(s) 631
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 497
BspT104I TTCGAA 1 cut(s) 532
BssECI CCNNGG 4 cut(s) 227, 255, 371, 480
BssMI GATC 3 cut(s) 3, 188, 489
BssNI GRCGYC 1 cut(s) 217
BssSI CACGAG 1 cut(s) 459
BssT1I CCWWGG 2 cut(s) 227, 480
Bst2BI CACGAG 1 cut(s) 459
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 532
BstDEI CTNAG 1 cut(s) 169
BstDSI CCRYGG 2 cut(s) 255, 480
BstEII GGTNACC 1 cut(s) 140
BstF5I GGATG 2 cut(s) 381, 559
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 3 cut(s) 6, 191, 492
BstMBI GATC 3 cut(s) 3, 188, 489
BstMWI GCNNNNNNNGC 2 cut(s) 450, 635
BstNI CCWGG 1 cut(s) 372
BstPAI GACNNNNGTC 1 cut(s) 216
BstPI GGTNACC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 370
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 1 cut(s) 147
Bsu36I CCTNAGG 1 cut(s) 169
BsuRI GGCC 2 cut(s) 260, 465
BtgI CCRYGG 2 cut(s) 255, 480
BtsCI GGATG 2 cut(s) 381, 559
BtsI GCAGTG 1 cut(s) 624
BtsIMutI CAGTG 2 cut(s) 73, 624
BveI ACCTGC 1 cut(s) 573
CaiI CAGNNNCTG 1 cut(s) 326
Csp6I GTAC 1 cut(s) 324
CviAII CATG 2 cut(s) 208, 481
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 169
DpnI GATC 3 cut(s) 5, 190, 491
DpnII GATC 3 cut(s) 3, 188, 489
EaeI YGGCCR 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 227, 480
Eco57I CTGAAG 1 cut(s) 49
Eco81I CCTNAGG 1 cut(s) 169
Eco91I GGTNACC 1 cut(s) 140
EcoO65I GGTNACC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 227, 480
ErhI CCWWGG 2 cut(s) 227, 480
FaeI CATG 2 cut(s) 211, 484
FaiI YATR 9 cut(s) 93, 158, 209, 263, 318, 334, 482, 561, 668
FatI CATG 2 cut(s) 207, 480
FokI GGATG 2 cut(s) 388, 566
HaeIII GGCC 2 cut(s) 260, 465
Hin1I GRCGYC 1 cut(s) 217
Hin1II CATG 2 cut(s) 211, 484
HindIII AAGCTT 1 cut(s) 415
HinfI GANTC 4 cut(s) 164, 196, 287, 505
HphI GGTGA 3 cut(s) 413, 463, 608
Hpy188I TCNGA 2 cut(s) 163, 244
Hpy188III TCNNGA 2 cut(s) 284, 291
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 275, 629
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 635
HpyF3I CTNAG 1 cut(s) 169
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 217
Hsp92II CATG 2 cut(s) 211, 484
Kzo9I GATC 3 cut(s) 3, 188, 489
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 2 cut(s) 140, 614
MalI GATC 3 cut(s) 5, 190, 491
MboI GATC 3 cut(s) 3, 188, 489
MboII GAAGA 4 cut(s) 55, 170, 323, 359
MluCI AATT 7 cut(s) 85, 150, 238, 295, 607, 645, 663
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 2 cut(s) 178, 512
MseI TTAA 3 cut(s) 306, 476, 644
MspR9I CCNGG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 450, 635
NcoI CCATGG 1 cut(s) 480
NdeII GATC 3 cut(s) 3, 188, 489
NlaIII CATG 2 cut(s) 211, 484
NmuCI GTSAC 1 cut(s) 614
NspV TTCGAA 1 cut(s) 532
PfeI GAWTC 4 cut(s) 164, 196, 287, 505
PshAI GACNNNNGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 370
PspEI GGTNACC 1 cut(s) 140
PspGI CCWGG 1 cut(s) 370
PstI CTGCAG 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 326
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
SaqAI TTAA 3 cut(s) 306, 476, 644
Sau3AI GATC 3 cut(s) 3, 188, 489
ScrFI CCNGG 1 cut(s) 372
SfcI CTRYAG 1 cut(s) 627
SfuI TTCGAA 1 cut(s) 532
Sse9I AATT 7 cut(s) 85, 150, 238, 295, 607, 645, 663
SsiI CCGC 2 cut(s) 145, 568
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 2 cut(s) 227, 480
TaaI ACNGT 1 cut(s) 328
TaiI ACGT 1 cut(s) 220
TaqI TCGA 1 cut(s) 532
TasI AATT 7 cut(s) 85, 150, 238, 295, 607, 645, 663
TfiI GAWTC 4 cut(s) 164, 196, 287, 505
Tru1I TTAA 3 cut(s) 306, 476, 644
Tru9I TTAA 3 cut(s) 306, 476, 644
TscAI CASTG 2 cut(s) 73, 631
TseFI GTSAC 1 cut(s) 614
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 3 cut(s) 196, 392, 648
TspRI CASTG 2 cut(s) 73, 631
XapI RAATTY 2 cut(s) 150, 295
ZraI GACGTC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.