Rh6AG392200

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000509
Physical Location & Seq
Reverse (-)
59105433 .. 59107033
1601 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG392200.1

Sequence Viewer

Length: 1167 bp
ATGGCAATGGCTCTTCCTCTTATTATTTGCTTGATATTATTCTCAAGCTTGTTTCCATTTCCATGCCATGCAATCACAGACACGCTCACAGCTTCAGACTCGTTGAGCGACAACCAAACGCTGGTTTCTGCAGGCGGAGTCTTCGTCCTTGGCTTCTTCATCGATAGCTCTTCAGGTAATCACTATCTAGGTATATGGCTGAGAGCTGATGCAAACAGAGTTGTTTGGGTTGCCTACCGTGAAATACCTATATTGGACTCTTCCGGCGTGCTTCAAATCCGGTCTGGGAATCTGGTTGTCTCCGACCGGCGACAACTGCAGCTCATAGTCAACTCGGGAAACCTCGCCGCCACCACCACCAACACGAGTGCAACACTTCTTGATACGGGAAATCTTGTGCTTAAGGATGAAAATACAGGTACCACTGTATGGCAGAGCTTCGATGTACCAACAGACACCTATCTTCCGGGGATGAAAGTTGGGTTGTTTGGCCTAAACACAAACCAACAAAGCTTTCGGATTCTCACTTCCTGGGAAAGCCCTCAAAACCCTAGTCGTGGCCTCTTCACCTTCTCTCTGGATAGAATAGACTTCACTAAAATTGATGTTTGGCGAGGAGATGGACTCCAAATGCATATCGCTTTCTGGGACGGAAATGATCTCCGGTTCATTTTCGAGAACACAAGCGCAAACAATGACTACAACTTTAGCTACACTTCCATTAATGGAAGTGAAGCCTACTACACTTTTAGCCACAACAAGAAGTATGACCTCATGTGGTTTGTAATGGCTTCAACAGGAAACCTAGACCAGTACTTCATGGTGAATGGGAAGATTACTTCTACGAGTCATGCTTTGTGTGAAGATTCAAGTGGTGGTAATAGTGGAAAGTGCTTGACTTCTTTACCACCTATGTGTGGTAATACTTTTAACCAGACGAATGGTTCGTTGCCGTCGACTGTTAAGGTTGACTCAATTAATATAGGGGCTAATGATTGTGAGACTTTGTGCAAGAGCAATTGTTCTTGTACTGCATATGTTTCAGTTCAGAATGATCAATCGGTTTGTCAGCTTTATTATGGGAGTAAACAGGAGTTGATGAAGATGATGGAGATAGGGTCAGGGACTATCAACGTGCGTGTTTCTGCTAATACAAGTGGTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

388

Amino Acids

42.51

Weight (kDa)

4.9

Isoelectric Point (pI)

37.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 74 - 178 1.3e-27 D-mannose binding lectin
PAN_2 PF08276 316 - 358 4.8e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 419
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 2 cut(s) 121, 429
AccI GTMKAC 1 cut(s) 956
AciI CCGC 2 cut(s) 135, 348
AcuI CTGAAG 2 cut(s) 78, 156
AfaI GTAC 5 cut(s) 421, 447, 815, 1030, 1162
AfiI CCNNNNNNNGG 4 cut(s) 121, 429, 557, 917
AflII CTTAAG 1 cut(s) 401
AgsI TTSAA 3 cut(s) 275, 795, 870
AjnI CCWGG 1 cut(s) 530
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AleI CACNNNNGTG 1 cut(s) 913
AluBI AGCT 9 cut(s) 48, 92, 168, 206, 322, 438, 513, 711, 1072
AluI AGCT 9 cut(s) 48, 92, 168, 206, 322, 438, 513, 711, 1072
Alw26I GTCTC 2 cut(s) 304, 995
Ama87I CYCGRG 1 cut(s) 334
AoxI GGCC 2 cut(s) 490, 559
ApeKI GCWGC 1 cut(s) 319
ArsI GACNNNNNNTTYG 4 cut(s) 538, 570, 928, 960
AseI ATTAAT 2 cut(s) 723, 978
Asp718I GGTACC 1 cut(s) 419
AspLEI GCGC 1 cut(s) 689
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 2 cut(s) 559, 835
AvaI CYCGRG 1 cut(s) 334
BaeI ACNNNNGTAYC 2 cut(s) 411, 444
BanI GGYRCC 1 cut(s) 419
BauI CACGAG 1 cut(s) 364
BbsI GAAGAC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 331
BccI CCATC 2 cut(s) 614, 1102
BceAI ACGGC 1 cut(s) 937
BciT130I CCWGG 1 cut(s) 532
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 304, 995
BfaI CTAG 3 cut(s) 188, 552, 806
BfmI CTRYAG 2 cut(s) 129, 317
BfrI CTTAAG 1 cut(s) 401
BisI GCNGC 2 cut(s) 320, 348
BlsI GCNGC 2 cut(s) 321, 349
BmcAI AGTACT 1 cut(s) 815
Bme1390I CCNGG 2 cut(s) 468, 532
BmeT110I CYCGRG 1 cut(s) 334
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 2 cut(s) 468, 532
BmsI GCATC 1 cut(s) 199
BpiI GAAGAC 1 cut(s) 133
BplI GAGNNNNNCTC 2 cut(s) 609, 641
BpuEI CTTGAG 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 1164
BsaJI CCNNGG 3 cut(s) 148, 467, 531
BsaWI WCCGGW 2 cut(s) 279, 663
BsaXI ACNNNNNCTCC 4 cut(s) 129, 159, 1103, 1133
Bsc4I CCNNNNNNNGG 4 cut(s) 121, 429, 557, 917
Bse118I RCCGGY 1 cut(s) 306
Bse1I ACTGG 1 cut(s) 811
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 532
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 3 cut(s) 148, 467, 531
BseGI GGATG 2 cut(s) 412, 477
BseLI CCNNNNNNNGG 4 cut(s) 121, 429, 557, 917
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 811
BseRI GAGGAG 1 cut(s) 630
BseXI GCAGC 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 2 cut(s) 492, 561
BshNI GGYRCC 1 cut(s) 419
BshVI ATCGAT 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 307
BsiHKCI CYCGRG 1 cut(s) 334
BsiSI CCGG 5 cut(s) 264, 280, 307, 467, 664
BslFI GGGAC 2 cut(s) 662, 1138
BslI CCNNNNNNNGG 4 cut(s) 121, 429, 557, 917
BsmAI GTCTC 2 cut(s) 304, 995
BsmFI GGGAC 2 cut(s) 662, 1138
BsnI GGCC 2 cut(s) 492, 561
BsoBI CYCGRG 1 cut(s) 334
Bsp143I GATC 2 cut(s) 658, 1054
BspACI CCGC 2 cut(s) 135, 348
BspANI GGCC 2 cut(s) 492, 561
BspCNI CTCAG 1 cut(s) 192
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 1 cut(s) 421
BspMAI CTGCAG 2 cut(s) 133, 321
BspQI GCTCTTC 2 cut(s) 18, 175
BspT107I GGYRCC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 306
BsrI ACTGG 1 cut(s) 811
BssAI RCCGGY 1 cut(s) 306
BssECI CCNNGG 3 cut(s) 148, 467, 531
BssMI GATC 2 cut(s) 658, 1054
BssSI CACGAG 1 cut(s) 364
BssT1I CCWWGG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 364
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 3 cut(s) 239, 427, 961
Bst6I CTCTTC 4 cut(s) 18, 175, 265, 569
BstAFI CTTAAG 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 1164
BstC8I GCNNGC 2 cut(s) 133, 269
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 412, 477
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 661, 1057
BstMAI GTCTC 2 cut(s) 304, 995
BstMBI GATC 2 cut(s) 658, 1054
BstMCI CGRYCG 1 cut(s) 307
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 466, 530
BstSFI CTRYAG 2 cut(s) 129, 317
BstSNI TACGTA 1 cut(s) 1164
BstV1I GCAGC 1 cut(s) 331
BstV2I GAAGAC 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 941
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 2 cut(s) 492, 561
BsuTUI ATCGAT 1 cut(s) 162
BtsCI GGATG 2 cut(s) 412, 477
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 2 cut(s) 133, 269
CfoI GCGC 1 cut(s) 689
Cfr10I RCCGGY 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 162
Csp6I GTAC 5 cut(s) 420, 446, 814, 1029, 1161
CviAII CATG 5 cut(s) 63, 68, 775, 820, 851
CviQI GTAC 5 cut(s) 420, 446, 814, 1029, 1161
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 660, 1056
DpnII GATC 2 cut(s) 658, 1054
Eam1104I CTCTTC 4 cut(s) 18, 175, 265, 569
EarI CTCTTC 4 cut(s) 18, 175, 265, 569
EciI GGCGGA 1 cut(s) 150
Eco105I TACGTA 1 cut(s) 1164
Eco130I CCWWGG 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 78, 156
Eco88I CYCGRG 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 636
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 5 cut(s) 66, 71, 778, 823, 854
FaqI GGGAC 2 cut(s) 662, 1138
FatI CATG 5 cut(s) 62, 67, 774, 819, 850
FauNDI CATATG 1 cut(s) 1036
FbaI TGATCA 1 cut(s) 1054
FblI GTMKAC 1 cut(s) 956
Fnu4HI GCNGC 2 cut(s) 320, 348
FokI GGATG 2 cut(s) 419, 484
Fsp4HI GCNGC 2 cut(s) 320, 348
FspBI CTAG 3 cut(s) 188, 552, 806
GlaI GCGC 1 cut(s) 688
GluI GCNGC 2 cut(s) 320, 348
HaeIII GGCC 2 cut(s) 492, 561
HapII CCGG 5 cut(s) 264, 280, 307, 467, 664
HhaI GCGC 1 cut(s) 689
Hin1II CATG 5 cut(s) 66, 71, 778, 823, 854
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 3 cut(s) 331, 957, 970
HindII GTYRAC 3 cut(s) 331, 957, 970
HindIII AAGCTT 2 cut(s) 46, 511
HinfI GANTC 9 cut(s) 98, 138, 257, 289, 520, 624, 847, 866, 971
HpaII CCGG 5 cut(s) 264, 280, 307, 467, 664
HphI GGTGA 2 cut(s) 559, 835
Hpy166II GTNNAC 4 cut(s) 331, 957, 970, 1088
Hpy188I TCNGA 4 cut(s) 97, 304, 519, 1050
Hpy188III TCNNGA 4 cut(s) 336, 380, 578, 676
Hpy8I GTNNAC 4 cut(s) 331, 957, 970, 1088
Hpy99I CGWCG 1 cut(s) 958
HpyAV CCTTC 1 cut(s) 580
HpyCH4III ACNGT 3 cut(s) 239, 427, 961
HpyCH4IV ACGT 2 cut(s) 1134, 1163
HpyCH4V TGCA 8 cut(s) 71, 131, 212, 319, 371, 634, 1011, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 1134, 1163
Hsp92II CATG 5 cut(s) 66, 71, 778, 823, 854
HspAI GCGC 1 cut(s) 687
KpnI GGTACC 1 cut(s) 423
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 2 cut(s) 658, 1054
LguI GCTCTTC 2 cut(s) 18, 175
Lsp1109I GCAGC 1 cut(s) 331
LweI GCATC 1 cut(s) 199
MaeI CTAG 3 cut(s) 188, 552, 806
MaeII ACGT 2 cut(s) 1134, 1163
MalI GATC 2 cut(s) 660, 1056
MboI GATC 2 cut(s) 658, 1054
MfeI CAATTG 1 cut(s) 1018
MluCI AATT 3 cut(s) 600, 975, 1018
MlyI GAGTC 6 cut(s) 92, 147, 251, 618, 856, 965
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 6 cut(s) 27, 353, 552, 572, 608, 782
Mph1103I ATGCAT 1 cut(s) 636
MseI TTAA 5 cut(s) 402, 723, 930, 963, 978
MslI CAYNNNNRTG 2 cut(s) 61, 913
MspCI CTTAAG 1 cut(s) 401
MspI CCGG 5 cut(s) 264, 280, 307, 467, 664
MspR9I CCNGG 2 cut(s) 468, 532
MunI CAATTG 1 cut(s) 1018
MvaI CCWGG 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 316
NciI CCSGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 1036
NdeII GATC 2 cut(s) 658, 1054
NlaIII CATG 5 cut(s) 66, 71, 778, 823, 854
NlaIV GGNNCC 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 636
OliI CACNNNNGTG 1 cut(s) 913
PciSI GCTCTTC 2 cut(s) 18, 175
PcsI WCGNNNNNNNCGW 2 cut(s) 944, 953
PfeI GAWTC 3 cut(s) 289, 520, 866
PflMI CCANNNNNTGG 2 cut(s) 121, 429
PkrI GCNGC 2 cut(s) 321, 349
PleI GAGTC 6 cut(s) 92, 146, 251, 618, 855, 965
PpsI GAGTC 6 cut(s) 92, 146, 251, 618, 855, 965
Ppu21I YACGTR 1 cut(s) 1164
PshBI ATTAAT 2 cut(s) 723, 978
Psp6I CCWGG 1 cut(s) 530
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 1 cut(s) 421
PstI CTGCAG 2 cut(s) 133, 321
RsaI GTAC 5 cut(s) 421, 447, 815, 1030, 1162
RsaNI GTAC 5 cut(s) 420, 446, 814, 1029, 1161
RseI CAYNNNNRTG 2 cut(s) 61, 913
SalI GTCGAC 1 cut(s) 955
SapI GCTCTTC 2 cut(s) 18, 175
SaqAI TTAA 5 cut(s) 402, 723, 930, 963, 978
SatI GCNGC 2 cut(s) 320, 348
Sau3AI GATC 2 cut(s) 658, 1054
ScaI AGTACT 1 cut(s) 815
SchI GAGTC 6 cut(s) 92, 147, 251, 618, 856, 965
ScrFI CCNGG 2 cut(s) 468, 532
SfaNI GCATC 1 cut(s) 199
SfcI CTRYAG 2 cut(s) 129, 317
SmiMI CAYNNNNRTG 2 cut(s) 61, 913
SmlI CTYRAG 2 cut(s) 43, 401
SmoI CTYRAG 2 cut(s) 43, 401
SnaBI TACGTA 1 cut(s) 1164
Sse9I AATT 3 cut(s) 600, 975, 1018
SsiI CCGC 2 cut(s) 135, 348
SspMI CTAG 3 cut(s) 188, 552, 806
StyD4I CCNGG 2 cut(s) 466, 530
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 3 cut(s) 239, 427, 961
TaiI ACGT 2 cut(s) 1137, 1166
TaqI TCGA 4 cut(s) 162, 441, 675, 956
TasI AATT 3 cut(s) 600, 975, 1018
TatI WGTACW 2 cut(s) 813, 1028
TauI GCSGC 1 cut(s) 350
TfiI GAWTC 3 cut(s) 289, 520, 866
Tru1I TTAA 5 cut(s) 402, 723, 930, 963, 978
Tru9I TTAA 5 cut(s) 402, 723, 930, 963, 978
TscAI CASTG 1 cut(s) 430
TseI GCWGC 1 cut(s) 319
TspDTI ATGAA 6 cut(s) 148, 423, 488, 658, 808, 1115
TspGWI ACGGA 1 cut(s) 666
TspRI CASTG 1 cut(s) 430
Van91I CCANNNNNTGG 2 cut(s) 121, 429
Vha464I CTTAAG 1 cut(s) 401
VspI ATTAAT 2 cut(s) 723, 978
XmiI GTMKAC 1 cut(s) 956
XspI CTAG 3 cut(s) 188, 552, 806
ZrmI AGTACT 1 cut(s) 815
Zsp2I ATGCAT 1 cut(s) 636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.