RchiOBHm_Chr6g0298461

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59886027 .. 59886949
923 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26793

Sequence Viewer

Length: 549 bp
ATGAACCCAAAGATTTCTGATTTTGGCATGGCAAGGATTTTCGGGGACAATGACACTAGAGGCAAAACAAACCGGGTTGTTGGTACATTTGGTTACATGTCACCGGAGTATGCCATGGACGGCCTCTTTTCTGAAAAATCCGATGTGTTTAGCTTTGGGGTGATCGTATTAGAGATTATTACTGGCAAGAAGAATATTGCCTTCTTTGAAGCTGATCATTCTCTGAACTTACTGGGCAAAGCTTGGACTTTGTGGAAAGAAGGTAATGGCATGGAGTTGATGGATTTGACACTGCGTGCTTCTTGTTCGAGCAGTGAAGTTATGAGATACATACAGATGGGTCTTCTGTGCGTGCAAGAAAGAGCTATTGATCGACCAAACATGTCTGATGTAGTTTCTCTGCTAAGCAATCAGTCATTTGCTCTGCCTTTTCCTAAAGAACCTGCATTTTTGAGTCAGCAAATTTCGACTGATGCAGATTCATCTTCAAGTAGGCAAAGACATTACTCTCAGAATGATCTAACCATTTCACAAGTGCATGGCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

182

Amino Acids

20.34

Weight (kDa)

5.6

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 3 - 66 4e-12 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 4 - 133 2.1e-14 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 141 - 182 7.2e-08 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 451, 534
AcsI RAATTY 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 85
AflIII ACRYGT 2 cut(s) 96, 381
AgsI TTSAA 2 cut(s) 209, 489
AluBI AGCT 4 cut(s) 153, 212, 242, 365
AluI AGCT 4 cut(s) 153, 212, 242, 365
AoxI GGCC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 462
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 93, 172
BbsI GAAGAC 1 cut(s) 335
BccI CCATC 2 cut(s) 274, 331
BceAI ACGGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 57
BfuAI ACCTGC 2 cut(s) 451, 534
BlpI GCTNAGC 1 cut(s) 404
Bme1390I CCNGG 1 cut(s) 74
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 242
BmsI GCATC 1 cut(s) 463
BmuI ACTGGG 1 cut(s) 242
BpiI GAAGAC 1 cut(s) 335
Bpu1102I GCTNAGC 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 114
BsaWI WCCGGW 1 cut(s) 103
Bse1I ACTGG 2 cut(s) 187, 237
BseDI CCNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 524
BseNI ACTGG 2 cut(s) 187, 237
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 73, 104
BslFI GGGAC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 4 cut(s) 162, 214, 370, 517
Bsp1720I GCTNAGC 1 cut(s) 404
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 523
BspMI ACCTGC 2 cut(s) 451, 534
BsrI ACTGG 2 cut(s) 187, 237
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 4 cut(s) 162, 214, 370, 517
BssT1I CCWWGG 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 297, 353
BstDEI CTNAG 2 cut(s) 404, 510
BstDSI CCRYGG 1 cut(s) 114
BstKTI GATC 4 cut(s) 165, 217, 373, 520
BstMBI GATC 4 cut(s) 162, 214, 370, 517
BstNSI RCATGY 2 cut(s) 100, 385
BstSCI CCNGG 1 cut(s) 72
BstV2I GAAGAC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 114
BtsI GCAGTG 2 cut(s) 290, 319
BtsIMutI CAGTG 2 cut(s) 290, 319
BveI ACCTGC 2 cut(s) 451, 534
Cac8I GCNNGC 2 cut(s) 297, 353
Csp6I GTAC 1 cut(s) 84
CviAII CATG 6 cut(s) 28, 97, 115, 271, 382, 539
CviJI RGCY 5 cut(s) 123, 153, 212, 242, 365
CviKI_1 RGCY 5 cut(s) 123, 153, 212, 242, 365
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 2 cut(s) 404, 510
DpnI GATC 4 cut(s) 164, 216, 372, 519
DpnII GATC 4 cut(s) 162, 214, 370, 517
DraIII CACNNNGTG 1 cut(s) 296
Eco130I CCWWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 31, 100, 118, 274, 385, 542
FaiI YATR 9 cut(s) 29, 98, 111, 116, 272, 323, 332, 383, 540
FaqI GGGAC 1 cut(s) 59
FatI CATG 6 cut(s) 27, 96, 114, 270, 381, 538
FbaI TGATCA 1 cut(s) 214
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 73, 104
Hin1II CATG 6 cut(s) 31, 100, 118, 274, 385, 542
HindIII AAGCTT 1 cut(s) 240
HinfI GANTC 2 cut(s) 454, 479
HpaII CCGG 2 cut(s) 73, 104
HphI GGTGA 2 cut(s) 93, 172
Hpy188I TCNGA 6 cut(s) 19, 133, 142, 225, 388, 513
HpyAV CCTTC 2 cut(s) 211, 254
HpyCH4V TGCA 4 cut(s) 355, 446, 476, 538
HpyF3I CTNAG 2 cut(s) 404, 510
Hsp92II CATG 6 cut(s) 31, 100, 118, 274, 385, 542
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 162, 214, 370, 517
LpnPI CCDG 6 cut(s) 86, 117, 168, 218, 456, 529
LweI GCATC 1 cut(s) 463
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 92, 99
MalI GATC 4 cut(s) 164, 216, 372, 519
MboI GATC 4 cut(s) 162, 214, 370, 517
MboII GAAGA 3 cut(s) 202, 335, 477
MluCI AATT 1 cut(s) 462
MlyI GAGTC 1 cut(s) 463
MnlI CCTC 2 cut(s) 53, 134
MslI CAYNNNNRTG 1 cut(s) 335
MspI CCGG 2 cut(s) 73, 104
MspR9I CCNGG 1 cut(s) 74
NciI CCSGG 1 cut(s) 74
NcoI CCATGG 1 cut(s) 114
NdeII GATC 4 cut(s) 162, 214, 370, 517
NlaIII CATG 6 cut(s) 31, 100, 118, 274, 385, 542
NmuCI GTSAC 1 cut(s) 99
NspI RCATGY 2 cut(s) 100, 385
PciI ACATGT 2 cut(s) 96, 381
PfeI GAWTC 1 cut(s) 479
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
PscI ACATGT 2 cut(s) 96, 381
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 335
Sau3AI GATC 4 cut(s) 162, 214, 370, 517
SchI GAGTC 1 cut(s) 463
ScrFI CCNGG 1 cut(s) 74
SetI ASST 7 cut(s) 155, 214, 244, 265, 367, 445, 548
SfaNI GCATC 1 cut(s) 463
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 1 cut(s) 462
SspI AATATT 1 cut(s) 196
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 114
TaqI TCGA 3 cut(s) 308, 373, 467
TasI AATT 1 cut(s) 462
TfiI GAWTC 1 cut(s) 479
TscAI CASTG 2 cut(s) 297, 319
TseFI GTSAC 1 cut(s) 99
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 2 cut(s) 17, 471
TspRI CASTG 2 cut(s) 297, 319
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 100, 385
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.