Prupe.1G474000_v2.0.a1

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000509
Physical Location & Seq
Forward (+)
39368045 .. 39371025
2981 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G474000.3

Sequence Viewer

Length: 1191 bp
ATGACTGGTTCGCTGCCATCTACGAGTGGTGTTTCCGTAAGTAGTATTGGTATTTCTGATTGCCAAACTTTGTGCAAGGCCAATTGTTCTTGTGCCGGATTCGCTTCTCTTCAGAATGAATCAACATGTCAACTTTATTATGGGAGTAAACAGAATCTATTGAAGATCATAGAGAAAGGGGCGGGGCTTATTTACATCCGTGATCGTGCTTCAAGTGGTAATAAGAAGGATAGTCTCTGGTTAATTGTGGCGGTTCCTTTGGCTTCCCACTTGGCTTTTGTTTCAATCTCGTTATATTGTTTTGTGCGTTGGAGAAGGTGGCGTAGAGAAGATCAAGCAAGGAGACGAGAAGAAGGCATTATCAATCCTGATCATGAAGGTAGAGGTGCAATTAACATGAATGTAGGCAGACCGAAGGATCAAGAATTGCCCTTTTTTGGTATTTCTACAATAAAGGCTGCAACAAATGACTTTGCCAAGGCTAATAAACTTGGGGAAGATTCAACCAAACGGGTGCTTTTGGATTGGAGAAAGCGCATGAACATTATAGAAGGGATTGCTCAAGGTCTTCTGTATCTTCATAAATACTCAAGATTACGGATCATTCACCGCGATATGAAGACCAGTAATATTCTGTTGGACTGTGACATGAACCCAAAAATATCTGATTTTGGCATGGCACGAATTTTCGGGGATAATGACACCAGGGGACAAACAAATCGGGTTGTTGGTACATTTGGTTACATGTCTCCGGAGTACGCTGTGGATGGCCGTTTTTCTGAAAAGTCAGATGTATTCAGCTTCGGGGTTATGTTATTTGAGATCATAAGTGGCAAGAAGAATATAGCCTTCTTTGAGGCTGATCACTCCCTAAACTTGCTAGGCATCGCTTGGAATTTGTGGAAAGAAGGAAAGAGCATGGAGTTGATGGATTCAACATTGAGCAGTTCTTGTTCAAGCACTGAAGTCACCAGATGCATTCAGATGGGTCTTTTGTGTGTGCAAGAAAAAGCTATGGACCGACCAACCATGTCGGATGTTGTTTCGATGCTAAGCAACAAAACAATGGCTCTGCCTCTTCCTAAAGAACCTGCATTTTTTAGTCGATCCAGTGATGCAGAATCATCTTCAAGTAGGAAAAGATGTCACTCTGGAAATGACATAACAATTTCAGACGTAGATGGTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

397

Amino Acids

44.14

Weight (kDa)

8.88

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1099
AccII CGCG 1 cut(s) 612
AccIII TCCGGA 1 cut(s) 751
AciI CCGC 3 cut(s) 182, 251, 610
AclWI GGATC 3 cut(s) 426, 608, 1101
AcoI YGGCCR 1 cut(s) 769
AcsI RAATTY 2 cut(s) 684, 895
AcuI CTGAAG 2 cut(s) 95, 984
AfaI GTAC 2 cut(s) 733, 758
AfiI CCNNNNNNNGG 1 cut(s) 437
AflIII ACRYGT 2 cut(s) 125, 744
AgsI TTSAA 7 cut(s) 163, 213, 285, 504, 936, 957, 1131
AjnI CCWGG 1 cut(s) 704
AluBI AGCT 2 cut(s) 801, 1013
AluI AGCT 2 cut(s) 801, 1013
Alw26I GTCTC 3 cut(s) 239, 337, 753
AlwI GGATC 3 cut(s) 426, 608, 1101
Aor13HI TCCGGA 1 cut(s) 751
AoxI GGCC 2 cut(s) 78, 769
ApeKI GCWGC 2 cut(s) 13, 458
ApoI RAATTY 2 cut(s) 684, 895
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 1018
AsuHPI GGTGA 2 cut(s) 599, 961
AvaII GGWCC 1 cut(s) 1018
BbsI GAAGAC 2 cut(s) 560, 626
BbvI GCAGC 1 cut(s) 445
BccI CCATC 5 cut(s) 25, 761, 922, 979, 1175
BceAI ACGGC 1 cut(s) 756
BciT130I CCWGG 1 cut(s) 706
BclI TGATCA 2 cut(s) 370, 862
BcoDI GTCTC 3 cut(s) 239, 337, 753
BfaI CTAG 1 cut(s) 881
BfuAI ACCTGC 1 cut(s) 1099
BisI GCNGC 2 cut(s) 14, 459
BlpI GCTNAGC 1 cut(s) 1052
BlsI GCNGC 2 cut(s) 15, 460
Bme1390I CCNGG 1 cut(s) 706
Bme18I GGWCC 1 cut(s) 1018
BmgT120I GGNCC 1 cut(s) 1018
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 1 cut(s) 706
BmsI GCATC 4 cut(s) 894, 965, 1038, 1105
BpiI GAAGAC 2 cut(s) 560, 626
Bpu1102I GCTNAGC 1 cut(s) 1052
BpuEI CTTGAG 2 cut(s) 546, 574
BsaJI CCNNGG 2 cut(s) 477, 705
BsaWI WCCGGW 1 cut(s) 751
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 10, 624, 1110
BseAI TCCGGA 1 cut(s) 751
BseBI CCWGG 1 cut(s) 706
BseDI CCNNGG 2 cut(s) 477, 705
BseGI GGATG 3 cut(s) 195, 772, 1042
BseLI CCNNNNNNNGG 1 cut(s) 437
BseNI ACTGG 3 cut(s) 10, 624, 1110
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 2 cut(s) 80, 771
BsiSI CCGG 2 cut(s) 96, 752
BslFI GGGAC 1 cut(s) 723
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 3 cut(s) 239, 337, 753
BsmBI CGTCTC 1 cut(s) 337
BsmFI GGGAC 1 cut(s) 723
BsmI GAATGC 1 cut(s) 978
BsnI GGCC 2 cut(s) 80, 771
Bsp13I TCCGGA 1 cut(s) 751
Bsp143I GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
Bsp1720I GCTNAGC 1 cut(s) 1052
BspACI CCGC 3 cut(s) 182, 251, 610
BspANI GGCC 2 cut(s) 80, 771
BspEI TCCGGA 1 cut(s) 751
BspFNI CGCG 1 cut(s) 612
BspHI TCATGA 1 cut(s) 373
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 1099
BspPI GGATC 3 cut(s) 426, 608, 1101
BsrI ACTGG 3 cut(s) 10, 624, 1110
BssECI CCNNGG 2 cut(s) 477, 705
BssMI GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
BssT1I CCWWGG 1 cut(s) 477
Bst2UI CCWGG 1 cut(s) 706
Bst4CI ACNGT 1 cut(s) 644
Bst6I CTCTTC 2 cut(s) 114, 1083
BstDEI CTNAG 1 cut(s) 1052
BstF5I GGATG 3 cut(s) 195, 772, 1042
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 9 cut(s) 168, 205, 334, 373, 421, 603, 825, 865, 1109
BstMAI GTCTC 3 cut(s) 239, 337, 753
BstMBI GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
BstMWI GCNNNNNNNGC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 706
BstNSI RCATGY 2 cut(s) 129, 748
BstSCI CCNGG 1 cut(s) 704
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 2 cut(s) 560, 626
BsuRI GGCC 2 cut(s) 80, 771
BtgZI GCGATG 1 cut(s) 871
BtsCI GGATG 3 cut(s) 195, 772, 1042
BtsIMutI CAGTG 2 cut(s) 960, 1117
BveI ACCTGC 1 cut(s) 1099
CciI TCATGA 1 cut(s) 373
CfoI GCGC 1 cut(s) 537
Cfr13I GGNCC 1 cut(s) 1018
Csp6I GTAC 2 cut(s) 732, 757
CviAII CATG 9 cut(s) 126, 374, 397, 538, 649, 676, 745, 919, 1030
CviQI GTAC 2 cut(s) 732, 757
DdeI CTNAG 1 cut(s) 1052
DpnI GATC 9 cut(s) 167, 204, 333, 372, 420, 602, 824, 864, 1108
DpnII GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
EaeI YGGCCR 1 cut(s) 769
Eam1104I CTCTTC 2 cut(s) 114, 1083
EarI CTCTTC 2 cut(s) 114, 1083
Eco130I CCWWGG 1 cut(s) 477
Eco47I GGWCC 1 cut(s) 1018
Eco57I CTGAAG 2 cut(s) 95, 984
EcoRII CCWGG 1 cut(s) 704
EcoT14I CCWWGG 1 cut(s) 477
EcoT22I ATGCAT 1 cut(s) 980
ErhI CCWWGG 1 cut(s) 477
Esp3I CGTCTC 1 cut(s) 337
FaeI CATG 9 cut(s) 129, 377, 400, 541, 652, 679, 748, 922, 1033
FaqI GGGAC 1 cut(s) 723
FatI CATG 9 cut(s) 125, 373, 396, 537, 648, 675, 744, 918, 1029
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 2 cut(s) 370, 862
Fnu4HI GCNGC 2 cut(s) 14, 459
FokI GGATG 3 cut(s) 182, 779, 1049
Fsp4HI GCNGC 2 cut(s) 14, 459
FspBI CTAG 1 cut(s) 881
GlaI GCGC 1 cut(s) 536
GluI GCNGC 2 cut(s) 14, 459
HaeIII GGCC 2 cut(s) 80, 771
HapII CCGG 2 cut(s) 96, 752
HhaI GCGC 1 cut(s) 537
Hin1II CATG 9 cut(s) 129, 377, 400, 541, 652, 679, 748, 922, 1033
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 6 cut(s) 99, 119, 154, 500, 932, 1121
HpaII CCGG 2 cut(s) 96, 752
HphI GGTGA 2 cut(s) 599, 961
Hpy166II GTNNAC 2 cut(s) 131, 149
Hpy188I TCNGA 8 cut(s) 58, 114, 667, 781, 790, 984, 1036, 1174
Hpy188III TCNNGA 6 cut(s) 368, 374, 422, 591, 752, 1152
Hpy8I GTNNAC 2 cut(s) 131, 149
HpyAV CCTTC 8 cut(s) 220, 309, 347, 371, 409, 545, 859, 902
HpyCH4III ACNGT 1 cut(s) 644
HpyCH4IV ACGT 1 cut(s) 1176
HpyCH4V TGCA 7 cut(s) 75, 389, 461, 978, 1003, 1094, 1118
HpyF10VI GCNNNNNNNGC 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 1052
HpySE526I ACGT 1 cut(s) 1176
Hsp92II CATG 9 cut(s) 129, 377, 400, 541, 652, 679, 748, 922, 1033
HspAI GCGC 1 cut(s) 535
Kpn2I TCCGGA 1 cut(s) 751
Ksp22I TGATCA 2 cut(s) 370, 862
Kzo9I GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 4 cut(s) 894, 965, 1038, 1105
MaeI CTAG 1 cut(s) 881
MaeII ACGT 1 cut(s) 1176
MaeIII GTNAC 4 cut(s) 644, 740, 967, 1145
MalI GATC 9 cut(s) 167, 204, 333, 372, 420, 602, 824, 864, 1108
MboI GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
MfeI CAATTG 1 cut(s) 82
MluCI AATT 7 cut(s) 82, 243, 390, 425, 684, 895, 1167
MmeI TCCRAC 3 cut(s) 290, 618, 1014
MnlI CCTC 3 cut(s) 377, 850, 1086
Mph1103I ATGCAT 1 cut(s) 980
MroI TCCGGA 1 cut(s) 751
MseI TTAA 2 cut(s) 242, 393
MslI CAYNNNNRTG 1 cut(s) 983
MspI CCGG 2 cut(s) 96, 752
MspR9I CCNGG 1 cut(s) 706
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 978
MvaI CCWGG 1 cut(s) 706
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 1 cut(s) 101
NdeII GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
NlaIII CATG 9 cut(s) 129, 377, 400, 541, 652, 679, 748, 922, 1033
NlaIV GGNNCC 1 cut(s) 255
NmuCI GTSAC 3 cut(s) 644, 967, 1145
NsiI ATGCAT 1 cut(s) 980
NspI RCATGY 2 cut(s) 129, 748
PagI TCATGA 1 cut(s) 373
PciI ACATGT 2 cut(s) 125, 744
PctI GAATGC 1 cut(s) 978
PfeI GAWTC 6 cut(s) 99, 119, 154, 500, 932, 1121
PkrI GCNGC 2 cut(s) 15, 460
PscI ACATGT 2 cut(s) 125, 744
Psp6I CCWGG 1 cut(s) 704
PspGI CCWGG 1 cut(s) 704
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 1 cut(s) 1018
RsaI GTAC 2 cut(s) 733, 758
RsaNI GTAC 2 cut(s) 732, 757
RseI CAYNNNNRTG 1 cut(s) 983
SaqAI TTAA 2 cut(s) 242, 393
SatI GCNGC 2 cut(s) 14, 459
Sau3AI GATC 9 cut(s) 165, 202, 331, 370, 418, 600, 822, 862, 1106
Sau96I GGNCC 1 cut(s) 1018
ScrFI CCNGG 1 cut(s) 706
SetI ASST 9 cut(s) 320, 382, 388, 568, 803, 1015, 1093, 1179, 1190
SfaNI GCATC 4 cut(s) 894, 965, 1038, 1105
SinI GGWCC 1 cut(s) 1018
SmiMI CAYNNNNRTG 1 cut(s) 983
SmlI CTYRAG 2 cut(s) 561, 589
SmoI CTYRAG 2 cut(s) 561, 589
Sse9I AATT 7 cut(s) 82, 243, 390, 425, 684, 895, 1167
SsiI CCGC 3 cut(s) 182, 251, 610
SspI AATATT 1 cut(s) 631
SspMI CTAG 1 cut(s) 881
StyD4I CCNGG 1 cut(s) 704
StyI CCWWGG 1 cut(s) 477
TaaI ACNGT 1 cut(s) 644
TaiI ACGT 1 cut(s) 1179
TaqI TCGA 2 cut(s) 1046, 1105
TaqII GACCGA 2 cut(s) 427, 1035
TasI AATT 7 cut(s) 82, 243, 390, 425, 684, 895, 1167
TfiI GAWTC 6 cut(s) 99, 119, 154, 500, 932, 1121
Tru1I TTAA 2 cut(s) 242, 393
Tru9I TTAA 2 cut(s) 242, 393
TscAI CASTG 2 cut(s) 967, 1117
TseFI GTSAC 3 cut(s) 644, 967, 1145
TseI GCWGC 2 cut(s) 13, 458
Tsp45I GTSAC 3 cut(s) 644, 967, 1145
TspDTI ATGAA 7 cut(s) 132, 390, 413, 554, 569, 632, 665
TspGWI ACGGA 3 cut(s) 25, 188, 613
TspRI CASTG 2 cut(s) 967, 1117
VpaK11BI GGWCC 1 cut(s) 1018
XapI RAATTY 2 cut(s) 684, 895
XceI RCATGY 2 cut(s) 129, 748
XspI CTAG 1 cut(s) 881
Zsp2I ATGCAT 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.