RchiOBHm_Chr6g0298411

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59861803 .. 59863871
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26788

Sequence Viewer

Length: 1095 bp
ATGGGCTCCAATTTTGCATCAACAGTTCCCCATGATGAAGTTGGAGGAGGTGCAGATAACATTGAAATAGGCAGACTGAAGGATCAAGAATTGCCCTTATTTAGTTTTTCTACCATAAAGACTGCAACAGATAACTTTGCAGATACTAATAAACTGGGGGAAGGTGGATTTGGGCCTGTCTATAAGGGCAAGTTGCTAGTAGGACAGGAAATTGCAGTCAAAAGGCTGTCCAAAATTTCCCGGCAAGGATTGAGGGAGTTCAAAAATGAAGTCTCAGTAATTTGCAAGCTCCAGCACAGGAATTTGGTTCAGCTTTTGGGGTGCTGCATTGAAGCAGAAGAGAGTATACTAATTTATGAGTACATGCCCAACAAAAGTCTGGATTGCTTCATTTTTGATTCAACCAACCGGGCACTTATGGATTGGAGGAGGTGTATTGGCATCATTGAAGGGATTGCTCAAGGTCTTCTCTATCTTCATAAATACTCAAGATTAAGGATTATTCACCGTGATTTAAAGACCAGCAATATACTGTTGGACAGTGAGATGAACCCGAAAATTTCTGATTTTGGCATGGCTAGAATTTTTGGGGACAACGACAGTAAAGGAAAAACGAATCGGGTTGTTGGTACATTTGGTTACATGTCTCCTGAGTACGCCATGGATGGCCTGTTTTCTGAAAAATCAGATGTCTTTAGCTTTGGGGTGATCATATTAGAGATCATAAGTTGCAAGAAGAACGTTGCCTTCTTTGAGACTGATCATTCTTTGAACTTACTTGGAAAAGTTTGGTATTTGTGGAAAGAAGGCAATGGCATGGACTTGATTGATTCTACTCTCTGCGATTCTTGTTCAAGCAGTGAAGTTATGAGATGCATACAAATGGGTCTTTTGTGCGTCCAAGAAAGAGCTATGGATCGACCAAATATGTCAGATGTTGTTTCAATGCTAAGCAATGAATCAATTGCTCTGCCTGTTCCTAAAGAACCTGCATTTTTGAATCAGCTAAATTCTGCTAATACAGATATATCTTCAAGTAAGCAAAGATGTAGCTGTAACAATGATCTAACAGTTTCCTCAGAACATGCCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

364

Amino Acids

40.6

Weight (kDa)

5.65

Isoelectric Point (pI)

47.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 48 - 246 7.3e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 50 - 316 2.7e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 997
AccI GTMKAC 1 cut(s) 346
AclI AACGTT 1 cut(s) 741
AclWI GGATC 2 cut(s) 90, 924
AcsI RAATTY 5 cut(s) 234, 301, 558, 582, 1009
AcuI CTGAAG 1 cut(s) 98
AfaI GTAC 3 cut(s) 362, 631, 656
AflIII ACRYGT 1 cut(s) 642
AjnI CCWGG 1 cut(s) 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 6 cut(s) 289, 313, 699, 911, 1006, 1053
AluI AGCT 6 cut(s) 289, 313, 699, 911, 1006, 1053
Alw26I GTCTC 3 cut(s) 277, 651, 749
AlwI GGATC 2 cut(s) 90, 924
AoxI GGCC 2 cut(s) 173, 667
ApeKI GCWGC 1 cut(s) 324
ApoI RAATTY 5 cut(s) 234, 301, 558, 582, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AspS9I GGNCC 1 cut(s) 173
AsuC2I CCSGG 2 cut(s) 241, 410
AsuHPI GGTGA 2 cut(s) 497, 718
BaeGI GKGCMC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 8
BarI GAAGNNNNNNTAC 2 cut(s) 330, 362
BbsI GAAGAC 1 cut(s) 458
BbvI GCAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 1090
BclI TGATCA 2 cut(s) 708, 760
BcnI CCSGG 2 cut(s) 241, 410
BcoDI GTCTC 3 cut(s) 277, 651, 749
BfaI CTAG 2 cut(s) 197, 579
BfuAI ACCTGC 1 cut(s) 997
BisI GCNGC 1 cut(s) 325
BlpI GCTNAGC 1 cut(s) 950
BlsI GCNGC 1 cut(s) 326
Bme1390I CCNGG 3 cut(s) 241, 410, 1090
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 3 cut(s) 241, 410, 1090
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 3 cut(s) 26, 450, 863
BmuI ACTGGG 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 458
BpmI CTGGAG 1 cut(s) 275
Bpu1102I GCTNAGC 1 cut(s) 950
BpuEI CTTGAG 2 cut(s) 444, 472
BpuMI CCSGG 2 cut(s) 241, 410
BsaJI CCNNGG 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 817, 961
BseBI CCWGG 1 cut(s) 1090
BseDI CCNNGG 1 cut(s) 660
BseGI GGATG 1 cut(s) 670
BseMI GCAATG 2 cut(s) 817, 961
BseMII CTCAG 3 cut(s) 288, 642, 1092
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 2 cut(s) 60, 442
BseSI GKGCMC 1 cut(s) 415
BseXI GCAGC 1 cut(s) 311
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 2 cut(s) 175, 669
BsiSI CCGG 2 cut(s) 241, 409
BslFI GGGAC 1 cut(s) 605
BsmAI GTCTC 3 cut(s) 277, 651, 749
BsmFI GGGAC 1 cut(s) 605
BsnI GGCC 2 cut(s) 175, 669
Bsp1286I GDGCHC 2 cut(s) 8, 415
Bsp143I GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
Bsp1720I GCTNAGC 1 cut(s) 950
Bsp19I CCATGG 1 cut(s) 660
BspANI GGCC 2 cut(s) 175, 669
BspCNI CTCAG 3 cut(s) 287, 643, 1091
BspLI GGNNCC 1 cut(s) 7
BspMI ACCTGC 1 cut(s) 997
BspPI GGATC 2 cut(s) 90, 924
BsrDI GCAATG 2 cut(s) 817, 961
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 660
BssMI GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
BssNAI GTATAC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 660
Bst1107I GTATAC 1 cut(s) 347
Bst2UI CCWGG 1 cut(s) 1090
Bst4CI ACNGT 6 cut(s) 25, 509, 534, 542, 602, 1072
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 274, 651, 950, 1078
BstDSI CCRYGG 1 cut(s) 660
BstF5I GGATG 1 cut(s) 670
BstKTI GATC 6 cut(s) 85, 711, 723, 763, 919, 1066
BstMAI GTCTC 3 cut(s) 277, 651, 749
BstMBI GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
BstNI CCWGG 1 cut(s) 1090
BstNSI RCATGY 3 cut(s) 367, 646, 1088
BstSCI CCNGG 3 cut(s) 239, 408, 1088
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 1 cut(s) 458
BstZ17I GTATAC 1 cut(s) 347
BsuRI GGCC 2 cut(s) 175, 669
BtgI CCRYGG 1 cut(s) 660
BtsCI GGATG 1 cut(s) 670
BtsI GCAGTG 1 cut(s) 865
BtsIMutI CAGTG 2 cut(s) 547, 865
BveI ACCTGC 1 cut(s) 997
Cac8I GCNNGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 886
Csp6I GTAC 3 cut(s) 361, 630, 655
CviAII CATG 7 cut(s) 32, 364, 574, 643, 661, 817, 1085
CviQI GTAC 3 cut(s) 361, 630, 655
DdeI CTNAG 4 cut(s) 274, 651, 950, 1078
DpnI GATC 6 cut(s) 84, 710, 722, 762, 918, 1065
DpnII GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
DraI TTTAAA 1 cut(s) 516
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 660
Eco24I GRGCYC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 1088
EcoT14I CCWWGG 1 cut(s) 660
EcoT22I ATGCAT 1 cut(s) 878
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 660
FaeI CATG 7 cut(s) 35, 367, 577, 646, 664, 820, 1088
FaqI GGGAC 1 cut(s) 605
FatI CATG 7 cut(s) 31, 363, 573, 642, 660, 816, 1084
FbaI TGATCA 2 cut(s) 708, 760
FblI GTMKAC 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 325
FokI GGATG 1 cut(s) 677
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 325
FspBI CTAG 2 cut(s) 197, 579
GluI GCNGC 1 cut(s) 325
GsuI CTGGAG 1 cut(s) 275
HaeIII GGCC 2 cut(s) 175, 669
HapII CCGG 2 cut(s) 241, 409
HgaI GACGC 1 cut(s) 886
Hin1II CATG 7 cut(s) 35, 367, 577, 646, 664, 820, 1088
HinfI GANTC 6 cut(s) 398, 616, 830, 845, 959, 1000
HpaII CCGG 2 cut(s) 241, 409
HphI GGTGA 2 cut(s) 497, 718
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 5 cut(s) 565, 679, 688, 934, 1081
Hpy188III TCNNGA 4 cut(s) 86, 380, 489, 650
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 5 cut(s) 73, 155, 443, 757, 800
HpyCH4III ACNGT 6 cut(s) 25, 509, 534, 542, 602, 1072
HpyCH4IV ACGT 1 cut(s) 741
HpyF3I CTNAG 4 cut(s) 274, 651, 950, 1078
HpySE526I ACGT 1 cut(s) 741
Hsp92II CATG 7 cut(s) 35, 367, 577, 646, 664, 820, 1088
Ksp22I TGATCA 2 cut(s) 708, 760
Kzo9I GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
LmnI GCTCC 2 cut(s) 11, 294
Lsp1109I GCAGC 1 cut(s) 311
LweI GCATC 3 cut(s) 26, 450, 863
MaeI CTAG 2 cut(s) 197, 579
MaeII ACGT 1 cut(s) 741
MaeIII GTNAC 2 cut(s) 638, 1055
MalI GATC 6 cut(s) 84, 710, 722, 762, 918, 1065
MboI GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
MboII GAAGA 5 cut(s) 350, 458, 467, 748, 1023
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 8, 415
MmeI TCCRAC 2 cut(s) 22, 516
MnlI CCTC 6 cut(s) 38, 41, 246, 420, 423, 1087
Mph1103I ATGCAT 1 cut(s) 878
MseI TTAA 2 cut(s) 494, 515
MslI CAYNNNNRTG 1 cut(s) 881
MspI CCGG 2 cut(s) 241, 409
MspR9I CCNGG 3 cut(s) 241, 410, 1090
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 1 cut(s) 1090
NciI CCSGG 2 cut(s) 241, 410
NcoI CCATGG 1 cut(s) 660
NdeII GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
NlaIII CATG 7 cut(s) 35, 367, 577, 646, 664, 820, 1088
NlaIV GGNNCC 1 cut(s) 7
NsiI ATGCAT 1 cut(s) 878
NspI RCATGY 3 cut(s) 367, 646, 1088
PciI ACATGT 1 cut(s) 642
PfeI GAWTC 6 cut(s) 398, 616, 830, 845, 959, 1000
PkrI GCNGC 1 cut(s) 326
PscI ACATGT 1 cut(s) 642
Psp1406I AACGTT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 1088
PspGI CCWGG 1 cut(s) 1088
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 173
RsaI GTAC 3 cut(s) 362, 631, 656
RsaNI GTAC 3 cut(s) 361, 630, 655
RseI CAYNNNNRTG 1 cut(s) 881
SaqAI TTAA 2 cut(s) 494, 515
SatI GCNGC 1 cut(s) 325
Sau3AI GATC 6 cut(s) 82, 708, 720, 760, 916, 1063
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 3 cut(s) 241, 410, 1090
SduI GDGCHC 2 cut(s) 8, 415
SfaNI GCATC 3 cut(s) 26, 450, 863
SmiMI CAYNNNNRTG 1 cut(s) 881
SmlI CTYRAG 2 cut(s) 459, 487
SmoI CTYRAG 2 cut(s) 459, 487
SspMI CTAG 2 cut(s) 197, 579
StyD4I CCNGG 3 cut(s) 239, 408, 1088
StyI CCWWGG 1 cut(s) 660
TaaI ACNGT 6 cut(s) 25, 509, 534, 542, 602, 1072
TaiI ACGT 1 cut(s) 744
TaqI TCGA 1 cut(s) 919
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 6 cut(s) 398, 616, 830, 845, 959, 1000
Tru1I TTAA 2 cut(s) 494, 515
Tru9I TTAA 2 cut(s) 494, 515
TscAI CASTG 2 cut(s) 547, 865
TseI GCWGC 1 cut(s) 324
TspDTI ATGAA 6 cut(s) 51, 282, 379, 467, 563, 972
TspRI CASTG 2 cut(s) 547, 865
XapI RAATTY 5 cut(s) 234, 301, 558, 582, 1009
XceI RCATGY 3 cut(s) 367, 646, 1088
XcmI CCANNNNNNNNNTGG 2 cut(s) 38, 376
XmiI GTMKAC 1 cut(s) 346
XspI CTAG 2 cut(s) 197, 579
Zsp2I ATGCAT 1 cut(s) 878
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.