Rmu_co8314937.1_g000001

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8314937.1
OG0000509
Physical Location & Seq
Reverse (-)
2 .. 887
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8314937.1_g000001.1.cds

Sequence Viewer

Length: 679 bp
atgcctagcacgagggttatcatcagaaaagaattgtgtcctcttatctgcttcatatttttatttagcttctttttatcttcatcttttgcaacagacacactaacacccggagacacacttacagtcaatcaaaccctggtttcagctggtggagttttcgagcttggcttcttcaaaagtgacttttcaggtagttactatctaggaatttggttcagagccgatgcaaacaaggttgtttgggttggtaaccgcagagttcccatattggacgcttcaggaagtcttcaaatactatctgggaatctggttcttatagaccgccatcaaaaccatttgctagtcagtacaggaaatgttgccatggccataaacgcaaccgcaacacttcttgactctggaaattttatccttaaagaagcaaatacaggtactatgctatggcaaagttttgatattcctactgatacttatcttcctgggatgaaacttggttggtctcagcttaacagtaaccagccaatctttcgcgcttttgtttcttgggtcaacccccaaaatcctgctcttggcaactttactttaaccatggataggatcaactttacaaagattcaggtttggcgaggagataaagttcgaatggatattgggttttgggatggacataacctgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

226

Amino Acids

25.22

Weight (kDa)

7.8

Isoelectric Point (pI)

21.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 534
AciI CCGC 3 cut(s) 256, 325, 384
AclWI GGATC 1 cut(s) 608
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 2 cut(s) 210, 406
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 2 cut(s) 352, 436
AfiI CCNNNNNNNGG 2 cut(s) 572, 597
AgsI TTSAA 2 cut(s) 178, 293
AjnI CCWGG 2 cut(s) 138, 481
AloI GAACNNNNNNTCC 2 cut(s) 624, 656
AluBI AGCT 4 cut(s) 69, 149, 166, 508
AluI AGCT 4 cut(s) 69, 149, 166, 508
Alw26I GTCTC 2 cut(s) 108, 507
AlwI GGATC 1 cut(s) 608
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 2 cut(s) 210, 406
AspLEI GCGC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 111
AsuII TTCGAA 1 cut(s) 643
BalI TGGCCA 1 cut(s) 371
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 281
BccI CCATC 2 cut(s) 336, 659
BciT130I CCWGG 2 cut(s) 140, 483
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 2 cut(s) 108, 507
BfaI CTAG 3 cut(s) 6, 206, 344
Bme1390I CCNGG 3 cut(s) 111, 140, 483
BmrFI CCNGG 3 cut(s) 111, 140, 483
BmsI GCATC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 281
Bpu14I TTCGAA 1 cut(s) 643
BpuMI CCSGG 1 cut(s) 111
BsaBI GATNNNNATC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 4 cut(s) 138, 366, 482, 591
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 597
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 2 cut(s) 140, 483
BseDI CCNNGG 4 cut(s) 138, 366, 482, 591
BseGI GGATG 2 cut(s) 492, 670
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 2 cut(s) 572, 597
BseMII CTCAG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 572, 597
BsmAI GTCTC 2 cut(s) 108, 507
BsnI GGCC 1 cut(s) 371
Bso31I GGTCTC 1 cut(s) 507
Bsp119I TTCGAA 1 cut(s) 643
Bsp143I GATC 1 cut(s) 600
Bsp19I CCATGG 2 cut(s) 366, 591
BspACI CCGC 3 cut(s) 256, 325, 384
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 1 cut(s) 517
BspFNI CGCG 1 cut(s) 534
BspPI GGATC 1 cut(s) 608
BspT104I TTCGAA 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 507
BssECI CCNNGG 4 cut(s) 138, 366, 482, 591
BssMI GATC 1 cut(s) 600
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 2 cut(s) 366, 591
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 2 cut(s) 140, 483
Bst4CI ACNGT 2 cut(s) 127, 515
BstBI TTCGAA 1 cut(s) 643
BstDEI CTNAG 1 cut(s) 504
BstDSI CCRYGG 2 cut(s) 366, 591
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 2 cut(s) 492, 670
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 1 cut(s) 536
BstKTI GATC 1 cut(s) 603
BstMAI GTCTC 2 cut(s) 108, 507
BstMBI GATC 1 cut(s) 600
BstMWI GCNNNNNNNGC 1 cut(s) 377
BstNI CCWGG 2 cut(s) 140, 483
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 3 cut(s) 109, 138, 481
BstUI CGCG 1 cut(s) 534
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 2 cut(s) 366, 591
BtsCI GGATG 2 cut(s) 492, 670
CfoI GCGC 1 cut(s) 536
CseI GACGC 1 cut(s) 284
Csp6I GTAC 2 cut(s) 351, 435
CviAII CATG 2 cut(s) 367, 592
CviJI RGCY 8 cut(s) 69, 149, 166, 171, 224, 371, 508, 523
CviKI_1 RGCY 8 cut(s) 69, 149, 166, 171, 224, 371, 508, 523
CviQI GTAC 2 cut(s) 351, 435
DdeI CTNAG 1 cut(s) 504
DpnI GATC 1 cut(s) 602
DpnII GATC 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 366, 591
Eco31I GGTCTC 1 cut(s) 507
Eco57I CTGAAG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 138, 481
EcoT14I CCWWGG 2 cut(s) 366, 591
ErhI CCWWGG 2 cut(s) 366, 591
FaeI CATG 2 cut(s) 370, 595
FaiI YATR 9 cut(s) 56, 269, 320, 368, 374, 440, 445, 593, 672
FatI CATG 2 cut(s) 366, 591
FokI GGATG 1 cut(s) 499
FspBI CTAG 3 cut(s) 6, 206, 344
GlaI GCGC 1 cut(s) 535
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 284
HhaI GCGC 1 cut(s) 536
Hin1II CATG 2 cut(s) 370, 595
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 3 cut(s) 307, 398, 616
HpaII CCGG 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 2 cut(s) 26, 221
Hpy188III TCNNGA 3 cut(s) 282, 395, 402
Hpy8I GTNNAC 1 cut(s) 553
HpyCH4III ACNGT 2 cut(s) 127, 515
HpyCH4V TGCA 2 cut(s) 92, 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 377
HpyF3I CTNAG 1 cut(s) 504
Hsp92II CATG 2 cut(s) 370, 595
HspAI GCGC 1 cut(s) 534
Kzo9I GATC 1 cut(s) 600
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 6, 206, 344
MaeIII GTNAC 4 cut(s) 182, 197, 251, 515
MalI GATC 1 cut(s) 602
MboI GATC 1 cut(s) 600
MboII GAAGA 4 cut(s) 72, 166, 281, 470
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 32, 210, 406
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 3 cut(s) 6, 51, 623
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 3 cut(s) 417, 510, 587
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 3 cut(s) 111, 140, 483
MvaI CCWGG 2 cut(s) 140, 483
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 1 cut(s) 377
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 2 cut(s) 366, 591
NdeII GATC 1 cut(s) 600
NlaIII CATG 2 cut(s) 370, 595
NmuCI GTSAC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 643
PfeI GAWTC 2 cut(s) 307, 616
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
Psp6I CCWGG 2 cut(s) 138, 481
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 2 cut(s) 138, 481
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 352, 436
RsaNI GTAC 2 cut(s) 351, 435
SaqAI TTAA 3 cut(s) 417, 510, 587
Sau3AI GATC 1 cut(s) 600
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 3 cut(s) 111, 140, 483
SetI ASST 9 cut(s) 71, 151, 168, 196, 240, 436, 510, 624, 678
SfaNI GCATC 1 cut(s) 217
SfuI TTCGAA 1 cut(s) 643
Sse9I AATT 3 cut(s) 32, 210, 406
SsiI CCGC 3 cut(s) 256, 325, 384
SspMI CTAG 3 cut(s) 6, 206, 344
StyD4I CCNGG 3 cut(s) 109, 138, 481
StyI CCWWGG 2 cut(s) 366, 591
TaaI ACNGT 2 cut(s) 127, 515
TaqI TCGA 2 cut(s) 162, 643
TasI AATT 3 cut(s) 32, 210, 406
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 2 cut(s) 307, 616
Tru1I TTAA 3 cut(s) 417, 510, 587
Tru9I TTAA 3 cut(s) 417, 510, 587
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 3 cut(s) 43, 72, 503
XapI RAATTY 2 cut(s) 210, 406
XspI CTAG 3 cut(s) 6, 206, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.