RchiOBHm_Chr6g0298421

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59863873 .. 59866440
2568 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26789

Sequence Viewer

Length: 1410 bp
ATGGTCTTAGCCCTTAAAGCCCCAGCCCACTTTAGCCTAGTCCACTTTACCCTCTTTAGCCCAGTCAACTCGTGCTTCTCATTTGCACTTTTCTGCTACTGCAGAACTGCCTCTTGTTCTTGTTTTTGCTCTGACATAAGTTTTAATACACTTACATCCGAAGGCACACTAAGAAACAATGAAACCCTGGTATCAAATGGTGGGATTTTCGAGCTTGGCTTCTTCAGCACTGAAAGCTTTTCAGACTATCACTATCTGGGGATATGGTTGAGAGCTGATGCAAACAAGGTTGTCTGGGTTGACCGTGAAAATCCCATTTTGGGTTCATCTGGCTTGCTTCAAATTTGGTCTGGGAATTTGGTTCTCACGGACAGGCGACAAGTGCAATTGATAGTCAATTCTGGATATGTTGCCACTGCCACAACTAACACAAGTGCAACACTTCTTGACACTGGAAATTTGGTCCTTAAGGAAGCAGATACGGGTACTATTATATGGCAGAGTTTTGATATTCCAAGCGATACGTATCTTCCTGGTATGAAACTTGGGTTGTTTGGCCTAAACAGTACAAACAAGCCAGGCTTTCACATGCTTGTTTCTTGGGTAAGCCCCGAAGACCCTGCTCGTGGCCTCTTCACCTTAACTGTTGATGGCACCAACTTAACAAAGCTTAAAGTTTGGCGAGGAGATGGAGCAAAAATGGATATTGCTTTTTGGGACGGACATGGGTTACAGTTTGTTTTTGAGAACTCAACAGGGAATAATAACTACAACTTTAGTTACCAGTCCAATAAATATGAGGCCTATTACACTTTTAGCAGCAGTCAGAAGTATGATCTCATGTGGTTTGTATTGGCTTCCACTGGAAACCTTGAACAGTATGTTATGTTGGACAAGAAGATTTCTTCTGTGAGTCATACTTTGTGTGAGGATGGTGGGATGTGCTTGACTTCAGTACCCTCTAAGTGTGATGATGGTGGTACTTTTCTTGAGATGAATGGTTCTTTGCCATCTACATATAATAGTGGTTCCATCAATACGAGGGCCAGTGATTGTGAAATTTTATGCAAGAACAATTGTTCTTGTACCGCATTTGCTTCAGTTCAGAATGAAGAAACTGGATGTCAACTTTATTATGGGAGTAAACGTGAATTATTGAAGATTATAGAGAAGGGTCCAGGGATTATTTACATCCGTGGTGGCACTCCAAGTGATGGTAAGAAGTGGAAGCTGTGGTTGGCTATTGCAGTTCCTTTGGCTTTCCTCTTGGCTCTTATTCCAATCTCCTTGTCATGCTATTTGTGTCGACGTAAAGGTTTGAGTTTGGTTGTTATTAGGTTGAATACATTGCTATTTGTGATTGTTAGAATTAAATTGGGGAGAGTGCAGATGTCTGCTCTCTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

469

Amino Acids

51.82

Weight (kDa)

6.96

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 97 - 185 1.3e-22 D-mannose binding lectin
PAN_2 PF08276 325 - 378 4.5e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 653
AccB7I CCANNNNNTGG 1 cut(s) 1214
AccI GTMKAC 1 cut(s) 1306
AciI CCGC 1 cut(s) 1089
AcsI RAATTY 4 cut(s) 342, 355, 457, 1059
AcuI CTGAAG 3 cut(s) 208, 936, 1083
AfaI GTAC 5 cut(s) 487, 568, 957, 982, 1087
AfiI CCNNNNNNNGG 3 cut(s) 320, 626, 1214
AflII CTTAAG 1 cut(s) 467
AgsI TTSAA 4 cut(s) 341, 875, 1159, 1342
AjnI CCWGG 4 cut(s) 186, 532, 577, 1177
AjuI GAANNNNNNNTTGG 2 cut(s) 1220, 1252
AluBI AGCT 5 cut(s) 214, 237, 275, 670, 1231
AluI AGCT 5 cut(s) 214, 237, 275, 670, 1231
AoxI GGCC 4 cut(s) 556, 628, 801, 1044
ApeKI GCWGC 1 cut(s) 819
ApoI RAATTY 4 cut(s) 342, 355, 457, 1059
AspS9I GGNCC 3 cut(s) 463, 1044, 1175
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 2 cut(s) 463, 1175
BaeI ACNNNNGTAYC 4 cut(s) 174, 207, 939, 972
BanI GGYRCC 1 cut(s) 653
BauI CACGAG 2 cut(s) 70, 624
BbsI GAAGAC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 831
BccI CCATC 7 cut(s) 644, 683, 926, 968, 1018, 1040, 1208
BcgI CGANNNNNNTGC 2 cut(s) 602, 636
BciT130I CCWGG 4 cut(s) 188, 534, 579, 1179
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 100
BfrI CTTAAG 1 cut(s) 467
BisI GCNGC 1 cut(s) 820
BlsI GCNGC 1 cut(s) 821
Bme1390I CCNGG 4 cut(s) 188, 534, 579, 1179
Bme18I GGWCC 2 cut(s) 463, 1175
BmgT120I GGNCC 3 cut(s) 463, 1044, 1175
BmiI GGNNCC 3 cut(s) 655, 1030, 1176
BmrFI CCNGG 4 cut(s) 188, 534, 579, 1179
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 56
BpiI GAAGAC 1 cut(s) 621
BpuEI CTTGAG 1 cut(s) 1010
BsaAI YACGTR 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 525
BsaJI CCNNGG 3 cut(s) 186, 1178, 1195
BsaXI ACNNNNNCTCC 2 cut(s) 1132, 1162
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 626, 1214
Bse1I ACTGG 6 cut(s) 62, 457, 784, 868, 1047, 1123
Bse3DI GCAATG 1 cut(s) 1346
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 4 cut(s) 188, 534, 579, 1179
BseDI CCNNGG 3 cut(s) 186, 1178, 1195
BseGI GGATG 5 cut(s) 155, 937, 945, 1127, 1191
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 3 cut(s) 320, 626, 1214
BseMI GCAATG 1 cut(s) 1346
BseNI ACTGG 6 cut(s) 62, 457, 784, 868, 1047, 1123
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 1 cut(s) 831
BseYI CCCAGC 1 cut(s) 22
BsgI GTGCAG 1 cut(s) 1406
BshFI GGCC 4 cut(s) 558, 630, 803, 1046
BshNI GGYRCC 1 cut(s) 653
BslFI GGGAC 1 cut(s) 731
BslI CCNNNNNNNGG 3 cut(s) 320, 626, 1214
BsmFI GGGAC 1 cut(s) 731
BsnI GGCC 4 cut(s) 558, 630, 803, 1046
Bsp143I GATC 1 cut(s) 835
BspACI CCGC 1 cut(s) 1089
BspANI GGCC 4 cut(s) 558, 630, 803, 1046
BspLI GGNNCC 3 cut(s) 655, 1030, 1176
BspMAI CTGCAG 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 653
BspTI CTTAAG 1 cut(s) 467
BsrDI GCAATG 1 cut(s) 1346
BsrI ACTGG 6 cut(s) 62, 457, 784, 868, 1047, 1123
BssECI CCNNGG 3 cut(s) 186, 1178, 1195
BssMI GATC 1 cut(s) 835
BssSI CACGAG 2 cut(s) 70, 624
Bst2BI CACGAG 2 cut(s) 70, 624
Bst2UI CCWGG 4 cut(s) 188, 534, 579, 1179
Bst4CI ACNGT 6 cut(s) 305, 566, 646, 735, 879, 1407
Bst6I CTCTTC 1 cut(s) 638
BstAFI CTTAAG 1 cut(s) 467
BstBAI YACGTR 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 335
BstDEI CTNAG 3 cut(s) 7, 170, 963
BstDSI CCRYGG 1 cut(s) 1195
BstF5I GGATG 5 cut(s) 155, 937, 945, 1127, 1191
BstKTI GATC 1 cut(s) 838
BstMBI GATC 1 cut(s) 835
BstMWI GCNNNNNNNGC 4 cut(s) 17, 225, 234, 382
BstNI CCWGG 4 cut(s) 188, 534, 579, 1179
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 4 cut(s) 186, 532, 577, 1177
BstSFI CTRYAG 1 cut(s) 100
BstSNI TACGTA 1 cut(s) 525
BstV1I GCAGC 1 cut(s) 831
BstV2I GAAGAC 1 cut(s) 621
BsuRI GGCC 4 cut(s) 558, 630, 803, 1046
BtgI CCRYGG 1 cut(s) 1195
BtsCI GGATG 5 cut(s) 155, 937, 945, 1127, 1191
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 5 cut(s) 228, 414, 450, 861, 1054
Cac8I GCNNGC 1 cut(s) 335
Cfr13I GGNCC 3 cut(s) 463, 1044, 1175
Csp6I GTAC 5 cut(s) 486, 567, 956, 981, 1086
CviAII CATG 4 cut(s) 589, 725, 841, 1293
CviQI GTAC 5 cut(s) 486, 567, 956, 981, 1086
DdeI CTNAG 3 cut(s) 7, 170, 963
DpnI GATC 1 cut(s) 837
DpnII GATC 1 cut(s) 835
Eam1104I CTCTTC 1 cut(s) 638
EarI CTCTTC 1 cut(s) 638
Eco105I TACGTA 1 cut(s) 525
Eco147I AGGCCT 1 cut(s) 803
Eco47I GGWCC 2 cut(s) 463, 1175
Eco57I CTGAAG 3 cut(s) 208, 936, 1083
EcoRII CCWGG 4 cut(s) 186, 532, 577, 1177
FaeI CATG 4 cut(s) 592, 728, 844, 1296
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 731
FatI CATG 4 cut(s) 588, 724, 840, 1292
FblI GTMKAC 1 cut(s) 1306
Fnu4HI GCNGC 1 cut(s) 820
FokI GGATG 5 cut(s) 142, 944, 952, 1134, 1178
Fsp4HI GCNGC 1 cut(s) 820
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 820
GsaI CCCAGC 1 cut(s) 26
HaeIII GGCC 4 cut(s) 558, 630, 803, 1046
Hin1II CATG 4 cut(s) 592, 728, 844, 1296
HincII GTYRAC 4 cut(s) 67, 301, 1127, 1307
HindII GTYRAC 4 cut(s) 67, 301, 1127, 1307
HindIII AAGCTT 2 cut(s) 235, 668
HinfI GANTC 1 cut(s) 913
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 6 cut(s) 43, 67, 301, 1127, 1145, 1307
Hpy188I TCNGA 5 cut(s) 133, 160, 244, 828, 1107
Hpy188III TCNNGA 3 cut(s) 402, 446, 989
Hpy8I GTNNAC 6 cut(s) 43, 67, 301, 1127, 1145, 1307
Hpy99I CGWCG 1 cut(s) 1311
HpyAV CCTTC 2 cut(s) 155, 1165
HpyCH4III ACNGT 6 cut(s) 305, 566, 646, 735, 879, 1407
HpyCH4IV ACGT 3 cut(s) 524, 1147, 1309
HpyCH4V TGCA 8 cut(s) 86, 102, 281, 385, 437, 1068, 1247, 1387
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 225, 234, 382
HpyF3I CTNAG 3 cut(s) 7, 170, 963
HpySE526I ACGT 3 cut(s) 524, 1147, 1309
Hsp92II CATG 4 cut(s) 592, 728, 844, 1296
Kzo9I GATC 1 cut(s) 835
LmnI GCTCC 1 cut(s) 692
Lsp1109I GCAGC 1 cut(s) 831
LweI GCATC 1 cut(s) 268
MaeI CTAG 1 cut(s) 38
MaeII ACGT 3 cut(s) 524, 1147, 1309
MaeIII GTNAC 2 cut(s) 729, 779
MalI GATC 1 cut(s) 837
MboI GATC 1 cut(s) 835
MboII GAAGA 8 cut(s) 214, 521, 625, 626, 897, 910, 1124, 1171
MfeI CAATTG 2 cut(s) 386, 1075
MlyI GAGTC 1 cut(s) 922
MmeI TCCRAC 1 cut(s) 870
MnlI CCTC 9 cut(s) 62, 121, 641, 677, 793, 922, 970, 1035, 1274
MseI TTAA 7 cut(s) 15, 144, 468, 641, 662, 672, 1371
MspCI CTTAAG 1 cut(s) 467
MspR9I CCNGG 4 cut(s) 188, 534, 579, 1179
MunI CAATTG 2 cut(s) 386, 1075
MvaI CCWGG 4 cut(s) 188, 534, 579, 1179
MwoI GCNNNNNNNGC 4 cut(s) 17, 225, 234, 382
NdeII GATC 1 cut(s) 835
NlaIII CATG 4 cut(s) 592, 728, 844, 1296
NlaIV GGNNCC 3 cut(s) 655, 1030, 1176
NspI RCATGY 1 cut(s) 592
PceI AGGCCT 1 cut(s) 803
PflMI CCANNNNNTGG 1 cut(s) 1214
PkrI GCNGC 1 cut(s) 821
PleI GAGTC 1 cut(s) 921
PpsI GAGTC 1 cut(s) 921
Ppu21I YACGTR 1 cut(s) 525
Psp6I CCWGG 4 cut(s) 186, 532, 577, 1177
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 4 cut(s) 186, 532, 577, 1177
PspN4I GGNNCC 3 cut(s) 655, 1030, 1176
PspPI GGNCC 3 cut(s) 463, 1044, 1175
PstI CTGCAG 1 cut(s) 104
RsaI GTAC 5 cut(s) 487, 568, 957, 982, 1087
RsaNI GTAC 5 cut(s) 486, 567, 956, 981, 1086
SalI GTCGAC 1 cut(s) 1305
SaqAI TTAA 7 cut(s) 15, 144, 468, 641, 662, 672, 1371
SatI GCNGC 1 cut(s) 820
Sau3AI GATC 1 cut(s) 835
Sau96I GGNCC 3 cut(s) 463, 1044, 1175
SchI GAGTC 1 cut(s) 922
ScrFI CCNGG 4 cut(s) 188, 534, 579, 1179
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 100
SinI GGWCC 2 cut(s) 463, 1175
SmlI CTYRAG 2 cut(s) 467, 989
SmoI CTYRAG 2 cut(s) 467, 989
SnaBI TACGTA 1 cut(s) 525
SseBI AGGCCT 1 cut(s) 803
SsiI CCGC 1 cut(s) 1089
SspMI CTAG 1 cut(s) 38
StuI AGGCCT 1 cut(s) 803
StyD4I CCNGG 4 cut(s) 186, 532, 577, 1177
TaaI ACNGT 6 cut(s) 305, 566, 646, 735, 879, 1407
TaiI ACGT 3 cut(s) 527, 1150, 1312
TaqI TCGA 2 cut(s) 210, 1306
TatI WGTACW 1 cut(s) 566
Tru1I TTAA 7 cut(s) 15, 144, 468, 641, 662, 672, 1371
Tru9I TTAA 7 cut(s) 15, 144, 468, 641, 662, 672, 1371
TscAI CASTG 5 cut(s) 235, 421, 457, 868, 1054
TseI GCWGC 1 cut(s) 819
TspDTI ATGAA 5 cut(s) 195, 315, 554, 1010, 1125
TspGWI ACGGA 3 cut(s) 383, 735, 1184
TspRI CASTG 5 cut(s) 235, 421, 457, 868, 1054
Van91I CCANNNNNTGG 1 cut(s) 1214
Vha464I CTTAAG 1 cut(s) 467
VpaK11BI GGWCC 2 cut(s) 463, 1175
XapI RAATTY 4 cut(s) 342, 355, 457, 1059
XceI RCATGY 1 cut(s) 592
XmiI GTMKAC 1 cut(s) 1306
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.