Rroxscaffold_7G00169660

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000509
Physical Location & Seq
Forward (+)
10242625 .. 10243170
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169660.1

Sequence Viewer

Length: 450 bp
ATGTCTCCCGAATATGCCATGGACGGACTCTTTTCTGAAAAATCAGATGTGTTCAGCTTTGGGGTGATCATTTTAGAGATCATAAGCGGAAAGAAGAACATTGCCTTTTTTGATGTTGATCAGTCTCACAACCTACTTGGCAGGGCTTGGAATTTGTGGAAAGACGGCAATGGAATGGGATTGATGGATTCAGCATTGCATGCCTCTTGTTCAAGCAATGAAGTTATGAGATACATTCAAATCGGTCTTCTATGCGTTCAAGAAAGAGCAATTGATCGACCAAACATGTCGGATGTTATATTTATGCTAAGCAATGAATCAATTGCTCTGCCTTATCCCAAAGAACCTGCATTTTTAAGTCAGTTCAGCTCAGACGCAGATTCATCTTCAAGCAGGCAAAGATATTACTCTAAAAATGATATGACCATGTCAGAAGTAGATGCCAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.73

Weight (kDa)

4.7

Isoelectric Point (pI)

56.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 1 - 99 2.9e-07 Protein tyrosine and serine/threonine kinase
DUF3403 PF11883 105 - 149 3.8e-07 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 355
AciI CCGC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 151
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 4 cut(s) 213, 239, 260, 390
AjnI CCWGG 1 cut(s) 443
AluBI AGCT 2 cut(s) 57, 369
AluI AGCT 2 cut(s) 57, 369
Alw26I GTCTC 2 cut(s) 9, 129
ApoI RAATTY 1 cut(s) 151
AsuHPI GGTGA 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 445
BclI TGATCA 2 cut(s) 66, 118
BcoDI GTCTC 2 cut(s) 9, 129
BfuAI ACCTGC 1 cut(s) 355
BlpI GCTNAGC 1 cut(s) 308
Bme1390I CCNGG 1 cut(s) 445
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 430
BpiI GAAGAC 1 cut(s) 239
Bpu1102I GCTNAGC 1 cut(s) 308
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 18
Bse3DI GCAATG 5 cut(s) 99, 175, 194, 223, 319
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 445
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 1 cut(s) 298
BseJI GATNNNNATC 1 cut(s) 117
BseMI GCAATG 5 cut(s) 99, 175, 194, 223, 319
BseMII CTCAG 1 cut(s) 384
BsmAI GTCTC 2 cut(s) 9, 129
Bsp143I GATC 4 cut(s) 66, 78, 118, 274
Bsp1720I GCTNAGC 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 1 cut(s) 87
BspCNI CTCAG 1 cut(s) 383
BspMI ACCTGC 1 cut(s) 355
BsrDI GCAATG 5 cut(s) 99, 175, 194, 223, 319
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 4 cut(s) 66, 78, 118, 274
BssT1I CCWWGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 445
BstAPI GCANNNNNTGC 1 cut(s) 200
BstC8I GCNNGC 2 cut(s) 201, 395
BstDEI CTNAG 2 cut(s) 308, 370
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 4 cut(s) 69, 81, 121, 277
BstMAI GTCTC 2 cut(s) 9, 129
BstMBI GATC 4 cut(s) 66, 78, 118, 274
BstMWI GCNNNNNNNGC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 445
BstNSI RCATGY 2 cut(s) 203, 289
BstSCI CCNGG 1 cut(s) 443
BstV2I GAAGAC 1 cut(s) 239
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 1 cut(s) 298
BveI ACCTGC 1 cut(s) 355
Cac8I GCNNGC 2 cut(s) 201, 395
CseI GACGC 1 cut(s) 383
CviAII CATG 4 cut(s) 19, 200, 286, 427
CviJI RGCY 3 cut(s) 57, 146, 369
CviKI_1 RGCY 3 cut(s) 57, 146, 369
DdeI CTNAG 2 cut(s) 308, 370
DpnI GATC 4 cut(s) 68, 80, 120, 276
DpnII GATC 4 cut(s) 66, 78, 118, 274
Eco130I CCWWGG 1 cut(s) 18
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 4 cut(s) 22, 203, 289, 430
FatI CATG 4 cut(s) 18, 199, 285, 426
FbaI TGATCA 2 cut(s) 66, 118
FokI GGATG 1 cut(s) 305
HgaI GACGC 1 cut(s) 383
Hin1II CATG 4 cut(s) 22, 203, 289, 430
HinfI GANTC 4 cut(s) 27, 188, 317, 380
HphI GGTGA 1 cut(s) 76
Hpy188I TCNGA 5 cut(s) 37, 46, 292, 373, 433
Hpy188III TCNNGA 2 cut(s) 8, 260
HpyCH4V TGCA 2 cut(s) 199, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 308, 370
Hsp92II CATG 4 cut(s) 22, 203, 289, 430
Ksp22I TGATCA 2 cut(s) 66, 118
Kzo9I GATC 4 cut(s) 66, 78, 118, 274
LpnPI CCDG 4 cut(s) 127, 360, 379, 430
LweI GCATC 1 cut(s) 430
MalI GATC 4 cut(s) 68, 80, 120, 276
MboI GATC 4 cut(s) 66, 78, 118, 274
MboII GAAGA 3 cut(s) 106, 239, 378
MfeI CAATTG 2 cut(s) 270, 321
MluCI AATT 3 cut(s) 151, 270, 321
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 1 cut(s) 214
MseI TTAA 1 cut(s) 356
MspR9I CCNGG 1 cut(s) 445
MunI CAATTG 2 cut(s) 270, 321
MvaI CCWGG 1 cut(s) 445
MwoI GCNNNNNNNGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 18
NdeII GATC 4 cut(s) 66, 78, 118, 274
NlaIII CATG 4 cut(s) 22, 203, 289, 430
NspI RCATGY 2 cut(s) 203, 289
PaeI GCATGC 1 cut(s) 203
PciI ACATGT 1 cut(s) 285
PfeI GAWTC 3 cut(s) 188, 317, 380
PflFI GACNNNGTC 1 cut(s) 427
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
PscI ACATGT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PsyI GACNNNGTC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 356
Sau3AI GATC 4 cut(s) 66, 78, 118, 274
SchI GAGTC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 445
SetI ASST 5 cut(s) 59, 135, 349, 371, 449
SfaNI GCATC 1 cut(s) 430
SphI GCATGC 1 cut(s) 203
Sse9I AATT 3 cut(s) 151, 270, 321
SsiI CCGC 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 277
TaqII GACCGA 1 cut(s) 233
TasI AATT 3 cut(s) 151, 270, 321
TfiI GAWTC 3 cut(s) 188, 317, 380
Tru1I TTAA 1 cut(s) 356
Tru9I TTAA 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 234, 330, 372
TspGWI ACGGA 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 427
XapI RAATTY 1 cut(s) 151
XceI RCATGY 2 cut(s) 203, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.