Rorug06G0280800

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000509
Physical Location & Seq
Reverse (-)
42814741 .. 42825245
10505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0280800.1

Sequence Viewer

Length: 3747 bp
ATGGCTCTGAGATATCGGCGTTTGAGAGAAATCTCAAGACTTTTGCCGCAAATTCACTCCGGTGATTGTTATATACAATGTAGATCGGCCACAAAATTAGCAGCATTGTCCATCATTCCTCGAGTATATTCTTGGGAGAGAAATGGTACGAGGATGCCACAGAGTAGGTTCTCAACCACTTCAGAAGTTTCATACAACTCTACCCAGGAGCTTGATCTTTTGTCCTTCATTAAATCGTCATTGGATGAGCGTGAAGGCCCATGCCATTGTTGGTTGAATAGGTCCAAAGGTAACAGAGATTTCCTTGGAAGAGATGGAACTTTCTTGGTTCTTGCTGGGCGGTGTGAAACTTTCTTAACAACTTGTGAATCTGTTATGATGTTAGAAAAAGTGAAGTCACTTCAACAGAGGTATCCTCAGCTCCATGTCATGGGTTTTCTGTCAGGCAGTTCAGTTAGTTTAGCTGCTGATCGAAGCCACCTAATCCAATATGTAATGAAGGAATATGTCACTTTTCCTGTCATATTGTCTAACAGGACCTTCCCTGAGATGGACAATGGGGCCTGCTACATTTTATTCAAAGATTTTGAAAGTCCAGTGTTTTACCATGAGAAGGACCTTGATCTCAGAATTCTTAACAAAGCCGTTGAGGAATTTCATGTGCAAGATGATGGGAGAGCCAGGTCCAGAGATAACTTGAAAAGCACTTGGGTGAAGCAATTTGAGATTATCAAGGAGCCATATGTCTATGCTTTGAGGAATTTACTCCTTAACTTCCCAGGGTGTGTCTCTGCAGATGAAAGTGGGAACCGTCTCTTCCTTTCTGACAGCAGCCACCATCGGATTATTGTATTTGATGGAAACGGAAAGATTCTGGACTGTATTGGTTCCTCCCCAGGTTTCGAGGATGGAAACTTTGAATCTGCCAAGATGGTGCGCCCTGCATCCTCACTTTATGATGCTGCTGAGGATTCCCTATATTTCGTTGATTCAGAGAATCATGCCATCAGGAAAGCTGATTTGGGTAAGCGGGTACTAGAAACTGTTTATCCGAATTATGACGCCAGTAAGAAAAGTAACTCAATTTGGACCAGAATCATGATCAAGCTGGGTTTGAGAAGCAATGATAAGCGGCCTGAAGAATTTGATATACAAGCACTAATGTTTCCTTGGCACCTGATGAAATCCAGTGAAGATAGTTTTTTCATTATAAACCGAAGCTTTGAAACTTTATGGATCCTAAATTTGGCTTCAGGAGAGATAGAACAAGTTGTCAAAGGGTTCCCAAAGATTTTGGATGTCTGTGGGCCGCAGATCATGGAGAAAGTATCCCTGTTGAAGCAGATGCCACATGATTGGTTGCGACAGCAGACTAATGCTGTCTGTTCACCAAAGAGGCTTCCATATGCTAGTCTTATATCTTCATTGACGACCTTGCAGAATCACGTGATCCTTTGTGACATGGTTGGACAGCAGATTTTGAAACTAAGTGAAGAAGCTGGAGTATGTTCGGCGTTCCAATTTTCGAATTTTGGAATCCTTGGATTGCCATATTGGCTGGCTTCCTCCTTGGAGAGAGTTTGTACAGTGGTTGGTGGGCATCAAGAAGAGATTGATCATCAGGAATGTTTCAGTTTGTTACCAGGTAGAATTGGTATACAATTAAATGTTGAAATCCCTGTGGGTACTGAGCTTGTAGAACAGTTACAAGAGGGGTGTATATGGCGCCAGGCAAGGGGTGCTGCCACTGAAGTGTTAGGGGCAGAGGATGCAGGAGGATCTTCAGAGAAGGTTGGTGCTGCCCAACAATGGTATGATGAATTGGATAATCTTGCCTTTTCACTATCGACACCTGAATCAGAGTTAAATGTTGAAGATGATCGTACAACTTCAGATATAGGATTTCAAGATGCGAGAGTTCACATTGATTGTGCTGTCAATACAAGTCCTGGTACAAGTGAGGTCATTGTTTATGCAGCATTGTATTTAAAACTTAGAAAGCAAGAATTATTAGAGGCTGATCAGGAGAAATGTGCAGCAAGGATAGCAGATATTTTGAACTCGGAGAGAAGTGGAAAGATGGGAAGAGATTCATTCATCCAATTCTTGTTAAACTCAAACAGAGATTTGAGAGACCTCATCTTCATGAAACCTCTCCATGTGAGGGTGAAATTGGATTGCCTTGATCACCCAAAGGCAGCTAATGGAAAAGACATTATCTTAACAGACTCCAACATTGAGATACTACCTTTGGAATTTATTTTGAAATATCAAGCAAGGGTGCCTTTGGTAGTTTGTACAGAGGGAGGATCGATTTTGATCTTCAGAGTCGGGAAGGATCCATACATTGAAGTAGTTGGGAAAACCATCTACTTCATTGTTGGGATCAAAGCTTACACTTATCTTATATACAAAGTTTTGCAAGGATTTGAACAAGTAGTATATGACATGAGTTGCTTTTCGTGCTTTTCATCTCATGAAAAGAAAGCATCTGCCAAAAGATCAAATAGTGGGAAGAGAGAACAACTTTTGACTCCTTCCGAAAGGGAACCGACTAATAATGTAGCACCTGCTGAAGTGCCTAAACAAGCACCGGCTGCTGAGCAAACCACAAACAATAAGAATGCCAATGCAAATGCCAATAAAGATGGCGGTCATAATATTGCTGCACAAACTTTCACCTTCCGGGAACTGGCAACAGCAACAAAGAACTTCCGACAAGAATGTCTGATAGGCGAGGGCGGATTTGGAAGAGTTTATAAGGGGAAGCTTGAAACAACAGAACAGATTGTAGCTGTGAAGCAACTTGATAGGAATGGCTTGCAAGGCAATAGAGAGTTCCTTGTTGAGGTGTTGATGTTGAGCCTCTTACACCATGACAATTTAGTGAATCTTATCGGATATTGCGCTGATGGTGATCAGAGACTTCTGGTGTATGAATACATGCCTTTGGGATCTTTAGAAGACCATTTATTAGACCTCCCATCAGAGCAAAAGCCATTAGATTGGTTCAAGAGAATGAAGATAGCTCTAGGAGCTGCCAAGGGTCTAGAATACTTGCACGATAAGGCGAATCCTCCTGTTATTTACCGCGATTTAAAATCTTCAAACATCTTATTAGATGGCGATTTCAATGCAAAACTCTCTGATTTCGGGCTAGCTAAGCTTGGACCGGTTGGAGACAAGACACATGTATCTTCAAGAATAATGGGCACGTACGGGTATTGTGCCCCAGAGTACCAAAGAACAGGCCAACTGACTGTTAAGTCGGATGTCTACAGTTTTGGAGTTGTGTTGTTAGAACTGATCACCGGAAGAAGAGCAATTGACACCACAAGGCCAACAAGGGAGCAAAATCTAGTGACTTGGGCAGAGCCAGTGTTTAAGGATCCTCATAAGTTTCCGGAACTAGCTGATCCACTTCTTCAAGGAGACTATCCGGTAAGAGCATTGAATCAAGCAGTTGCAGTTGCAGCAATGTGTCTTCATGACGAAGCACCGGCTCGTCCCTTAATGAGTGATGTGGTCAGTGCTCTCAGTTTCCTTGGGACTGATGATGACGAAAGTGTTCCCGGCTCGCCTCTACAATCTGATGATGAAGAAATGTCCAACGTAGAAGATGAGAATCCAAAGGATAAAGAAACTGTAAGGGAACGCGAACGAGCTGTGGCAGAAGCCATAGAATGGGGCTCAACGTCAAGGAGCAATGCAGCCACGTCAAAGTTGGAAAGTACTGCTTCATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

1248

Amino Acids

139.94

Weight (kDa)

5.52

Isoelectric Point (pI)

48.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 907 - 1117 2.2e-44 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 909 - 1118 5.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1211, 2760
AarI CACCTGC 1 cut(s) 2578
AasI GACNNNNNNGTC 2 cut(s) 2724, 3265
Acc36I ACCTGC 1 cut(s) 2578
AccB1I GGYRCC 3 cut(s) 1173, 1725, 2281
AccB7I CCANNNNNTGG 2 cut(s) 430, 3684
AccI GTMKAC 2 cut(s) 1657, 3276
AccII CGCG 2 cut(s) 3093, 3657
AccIII TCCGGA 1 cut(s) 3403
AciI CCGC 8 cut(s) 47, 340, 1030, 1132, 1310, 2652, 2742, 3091
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 8 cut(s) 51, 630, 653, 760, 1142, 1243, 1528, 2255
AcuI CTGAAG 8 cut(s) 165, 1158, 1236, 1767, 1770, 1875, 2308, 2595
AcvI CACGTG 1 cut(s) 1447
AcyI GRCGYC 2 cut(s) 1062, 1726
AflIII ACRYGT 1 cut(s) 3190
AgeI ACCGGT 1 cut(s) 3172
AjiI CACGTC 1 cut(s) 3717
AjnI CCWGG 7 cut(s) 204, 680, 778, 895, 1642, 1728, 1948
AjuI GAANNNNNNNTTGG 2 cut(s) 1004, 1036
AleI CACNNNNGTG 3 cut(s) 60, 710, 1751
Alw21I GWGCWC 1 cut(s) 3535
Alw26I GTCTC 6 cut(s) 793, 818, 2127, 2917, 3174, 3426
Ama87I CYCGRG 1 cut(s) 120
Aor13HI TCCGGA 1 cut(s) 3403
AoxI GGCC 7 cut(s) 87, 256, 561, 1133, 1307, 3250, 3338
ApoI RAATTY 8 cut(s) 51, 630, 653, 760, 1142, 1243, 1528, 2255
AsiGI ACCGGT 1 cut(s) 3172
Asp700I GAANNNNTTC 2 cut(s) 2089, 3567
AspLEI GCGC 3 cut(s) 939, 1728, 2909
AspS9I GGNCC 9 cut(s) 257, 282, 537, 561, 616, 684, 1089, 1307, 3170
AsuC2I CCSGG 2 cut(s) 2687, 3573
AsuHPI GGTGA 8 cut(s) 74, 724, 1380, 2179, 2180, 2671, 2927, 3301
AsuII TTCGAA 1 cut(s) 1526
AsuNHI GCTAGC 1 cut(s) 3157
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 6 cut(s) 282, 537, 616, 684, 1089, 3170
BaeGI GKGCMC 2 cut(s) 3215, 3232
BaeI ACNNNNGTAYC 4 cut(s) 395, 428, 3177, 3210
BamHI GGATCC 3 cut(s) 1236, 2338, 3388
BanI GGYRCC 3 cut(s) 1173, 1725, 2281
BanII GRGCYC 1 cut(s) 3692
BarI GAAGNNNNNNTAC 2 cut(s) 2327, 2359
BbrPI CACGTG 1 cut(s) 1447
BbsI GAAGAC 2 cut(s) 2970, 3476
Bbv12I GWGCWC 1 cut(s) 3535
BbvCI CCTCAGC 2 cut(s) 417, 966
BceAI ACGGC 1 cut(s) 629
BcgI CGANNNNNNTGC 2 cut(s) 3116, 3150
BciT130I CCWGG 7 cut(s) 206, 682, 780, 897, 1644, 1730, 1950
BciVI GTATCC 2 cut(s) 423, 1339
BclI TGATCA 6 cut(s) 1101, 1615, 2020, 2185, 2917, 3306
BcnI CCSGG 2 cut(s) 2687, 3573
BcoDI GTCTC 6 cut(s) 793, 818, 2127, 2917, 3174, 3426
BfaI CTAG 7 cut(s) 1037, 1410, 3032, 3050, 3158, 3359, 3410
BfmI CTRYAG 2 cut(s) 792, 3277
BfoI RGCGCY 1 cut(s) 1729
BfuAI ACCTGC 1 cut(s) 2578
BfuI GTATCC 2 cut(s) 423, 1339
BglI GCCNNNNNGGC 1 cut(s) 1555
BlpI GCTNAGC 2 cut(s) 2601, 3162
BmcAI AGTACT 1 cut(s) 3733
Bme1390I CCNGG 9 cut(s) 206, 682, 780, 897, 1644, 1730, 1950, 2687, 3573
Bme18I GGWCC 6 cut(s) 282, 537, 616, 684, 1089, 3170
BmeT110I CYCGRG 1 cut(s) 120
BmgBI CACGTC 1 cut(s) 3717
BmgT120I GGNCC 9 cut(s) 257, 282, 537, 561, 616, 684, 1089, 1307, 3170
BmrFI CCNGG 9 cut(s) 206, 682, 780, 897, 1644, 1730, 1950, 2687, 3573
BmsI GCATC 8 cut(s) 144, 949, 953, 1335, 1609, 1759, 1900, 2498
BmtI GCTAGC 1 cut(s) 3161
BpiI GAAGAC 2 cut(s) 2970, 3476
BplI GAGNNNNNCTC 2 cut(s) 400, 432
BpmI CTGGAG 1 cut(s) 1521
Bpu10I CCTNAGC 2 cut(s) 417, 966
Bpu1102I GCTNAGC 2 cut(s) 2601, 3162
Bpu14I TTCGAA 1 cut(s) 1526
BpuEI CTTGAG 1 cut(s) 19
BpuMI CCSGG 2 cut(s) 2687, 3573
Bsa29I ATCGAT 1 cut(s) 2312
BsaAI YACGTR 2 cut(s) 1447, 3216
BsaBI GATNNNNATC 3 cut(s) 2318, 2916, 3624
BsaHI GRCGYC 2 cut(s) 1062, 1726
BsaI GGTCTC 1 cut(s) 2127
BsaWI WCCGGW 5 cut(s) 59, 3172, 3311, 3403, 3439
Bse118I RCCGGY 3 cut(s) 2593, 3172, 3499
Bse1I ACTGG 5 cut(s) 596, 1065, 1188, 2697, 3377
Bse3DI GCAATG 3 cut(s) 1129, 3483, 3712
Bse8I GATNNNNATC 3 cut(s) 2318, 2916, 3624
BseAI TCCGGA 1 cut(s) 3403
BseBI CCWGG 7 cut(s) 206, 682, 780, 897, 1644, 1730, 1950
BseCI ATCGAT 1 cut(s) 2312
BseGI GGATG 8 cut(s) 159, 250, 913, 944, 1303, 1774, 2097, 3277
BseJI GATNNNNATC 3 cut(s) 2318, 2916, 3624
BseMI GCAATG 3 cut(s) 1129, 3483, 3712
BseMII CTCAG 7 cut(s) 431, 537, 640, 957, 1680, 2592, 3550
BseNI ACTGG 5 cut(s) 596, 1065, 1188, 2697, 3377
BseSI GKGCMC 2 cut(s) 3215, 3232
BseYI CCCAGC 2 cut(s) 335, 1108
BsgI GTGCAG 2 cut(s) 2055, 2652
Bsh1236I CGCG 2 cut(s) 3093, 3657
BshFI GGCC 7 cut(s) 89, 258, 563, 1135, 1309, 3252, 3340
BshNI GGYRCC 3 cut(s) 1173, 1725, 2281
BshTI ACCGGT 1 cut(s) 3172
BshVI ATCGAT 1 cut(s) 2312
BsiHKAI GWGCWC 1 cut(s) 3535
BsiHKCI CYCGRG 1 cut(s) 120
BsiSI CCGG 9 cut(s) 60, 2594, 2686, 3173, 3312, 3404, 3440, 3500, 3573
BsiWI CGTACG 1 cut(s) 3216
BslFI GGGAC 2 cut(s) 3492, 3562
BsmAI GTCTC 6 cut(s) 793, 818, 2127, 2917, 3174, 3426
BsmBI CGTCTC 1 cut(s) 818
BsmFI GGGAC 2 cut(s) 3492, 3562
BsmI GAATGC 1 cut(s) 2629
BsnI GGCC 7 cut(s) 89, 258, 563, 1135, 1309, 3252, 3340
Bso31I GGTCTC 1 cut(s) 2127
BsoBI CYCGRG 1 cut(s) 120
Bsp119I TTCGAA 1 cut(s) 1526
Bsp1286I GDGCHC 4 cut(s) 3215, 3232, 3535, 3692
Bsp13I TCCGGA 1 cut(s) 3403
Bsp1407I TGTACA 2 cut(s) 1583, 2297
Bsp1720I GCTNAGC 2 cut(s) 2601, 3162
BspACI CCGC 8 cut(s) 47, 340, 1030, 1132, 1310, 2652, 2742, 3091
BspANI GGCC 7 cut(s) 89, 258, 563, 1135, 1309, 3252, 3340
BspCNI CTCAG 7 cut(s) 430, 538, 639, 958, 1681, 2593, 3549
BspDI ATCGAT 1 cut(s) 2312
BspEI TCCGGA 1 cut(s) 3403
BspFNI CGCG 2 cut(s) 3093, 3657
BspHI TCATGA 4 cut(s) 1098, 2145, 2476, 3487
BspMAI CTGCAG 1 cut(s) 796
BspMI ACCTGC 1 cut(s) 2578
BspOI GCTAGC 1 cut(s) 3161
BspQI GCTCTTC 1 cut(s) 3313
BspT104I TTCGAA 1 cut(s) 1526
BspT107I GGYRCC 3 cut(s) 1173, 1725, 2281
BspTNI GGTCTC 1 cut(s) 2127
BsrDI GCAATG 3 cut(s) 1129, 3483, 3712
BsrFI RCCGGY 3 cut(s) 2593, 3172, 3499
BsrGI TGTACA 2 cut(s) 1583, 2297
BsrI ACTGG 5 cut(s) 596, 1065, 1188, 2697, 3377
BssAI RCCGGY 3 cut(s) 2593, 3172, 3499
BssNAI GTATAC 1 cut(s) 1658
BssNI GRCGYC 2 cut(s) 1062, 1726
BssT1I CCWWGG 6 cut(s) 304, 1169, 1540, 1569, 3042, 3544
Bst1107I GTATAC 1 cut(s) 1658
Bst2UI CCWGG 7 cut(s) 206, 682, 780, 897, 1644, 1730, 1950
Bst4CI ACNGT 8 cut(s) 812, 881, 1045, 1588, 1704, 3262, 3281, 3646
Bst6I CTCTTC 7 cut(s) 304, 821, 1602, 2080, 2510, 2746, 3313
BstACI GRCGYC 2 cut(s) 1062, 1726
BstAPI GCANNNNNTGC 3 cut(s) 1739, 1769, 2597
BstAUI TGTACA 2 cut(s) 1583, 2297
BstBAI YACGTR 2 cut(s) 1447, 3216
BstBI TTCGAA 1 cut(s) 1526
BstC8I GCNNGC 5 cut(s) 565, 1560, 2822, 3159, 3578
BstENI CCTNNNNNAGG 1 cut(s) 2846
BstF5I GGATG 8 cut(s) 159, 250, 913, 944, 1303, 1774, 2097, 3277
BstFNI CGCG 2 cut(s) 3093, 3657
BstH2I RGCGCY 1 cut(s) 1729
BstHHI GCGC 3 cut(s) 939, 1728, 2909
BstMAI GTCTC 6 cut(s) 793, 818, 2127, 2917, 3174, 3426
BstNI CCWGG 7 cut(s) 206, 682, 780, 897, 1644, 1730, 1950
BstNSI RCATGY 2 cut(s) 2947, 3194
BstSCI CCNGG 9 cut(s) 204, 680, 778, 895, 1642, 1728, 1948, 2685, 3571
BstSFI CTRYAG 2 cut(s) 792, 3277
BstSLI GKGCMC 2 cut(s) 3215, 3232
BstUI CGCG 2 cut(s) 3093, 3657
BstV2I GAAGAC 2 cut(s) 2970, 3476
BstX2I RGATCY 5 cut(s) 1236, 1778, 2338, 2954, 3388
BstXI CCANNNNNNTGG 2 cut(s) 1356, 3006
BstYI RGATCY 5 cut(s) 1236, 1778, 2338, 2954, 3388
BstZ17I GTATAC 1 cut(s) 1658
Bsu15I ATCGAT 1 cut(s) 2312
BsuI GTATCC 2 cut(s) 423, 1339
BsuRI GGCC 7 cut(s) 89, 258, 563, 1135, 1309, 3252, 3340
BsuTUI ATCGAT 1 cut(s) 2312
BtrI CACGTC 1 cut(s) 3717
BtsCI GGATG 8 cut(s) 159, 250, 913, 944, 1303, 1774, 2097, 3277
BtsIMutI CAGTG 6 cut(s) 603, 1195, 1593, 1746, 3384, 3535
BveI ACCTGC 1 cut(s) 2578
Cac8I GCNNGC 5 cut(s) 565, 1560, 2822, 3159, 3578
CciI TCATGA 4 cut(s) 1098, 2145, 2476, 3487
CfoI GCGC 3 cut(s) 939, 1728, 2909
Cfr10I RCCGGY 3 cut(s) 2593, 3172, 3499
Cfr13I GGNCC 9 cut(s) 257, 282, 537, 561, 616, 684, 1089, 1307, 3170
ClaI ATCGAT 1 cut(s) 2312
CseI GACGC 1 cut(s) 1070
CsiI ACCWGGT 1 cut(s) 1642
CspAI ACCGGT 1 cut(s) 3172
DinI GGCGCC 1 cut(s) 1727
DraI TTTAAA 2 cut(s) 1989, 3099
DrdI GACNNNNNNGTC 2 cut(s) 2724, 3265
DseDI GACNNNNNNGTC 2 cut(s) 2724, 3265
EaeI YGGCCR 1 cut(s) 87
Eam1104I CTCTTC 7 cut(s) 304, 821, 1602, 2080, 2510, 2746, 3313
EarI CTCTTC 7 cut(s) 304, 821, 1602, 2080, 2510, 2746, 3313
EciI GGCGGA 1 cut(s) 2757
Eco130I CCWWGG 6 cut(s) 304, 1169, 1540, 1569, 3042, 3544
Eco24I GRGCYC 1 cut(s) 3692
Eco31I GGTCTC 1 cut(s) 2127
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 6 cut(s) 282, 537, 616, 684, 1089, 3170
Eco57I CTGAAG 8 cut(s) 165, 1158, 1236, 1767, 1770, 1875, 2308, 2595
Eco72I CACGTG 1 cut(s) 1447
Eco88I CYCGRG 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 2846
EcoO109I RGGNCCY 3 cut(s) 537, 561, 616
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 7 cut(s) 204, 680, 778, 895, 1642, 1728, 1948
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 6 cut(s) 304, 1169, 1540, 1569, 3042, 3544
EcoT38I GRGCYC 1 cut(s) 3692
EgeI GGCGCC 1 cut(s) 1727
EheI GGCGCC 1 cut(s) 1727
ErhI CCWWGG 6 cut(s) 304, 1169, 1540, 1569, 3042, 3544
Esp3I CGTCTC 1 cut(s) 818
FalI AAGNNNNNCTT 3 cut(s) 2269, 2301, 3721
FaqI GGGAC 2 cut(s) 3492, 3562
FauI CCCGC 1 cut(s) 1023
FauNDI CATATG 2 cut(s) 742, 1405
FbaI TGATCA 6 cut(s) 1101, 1615, 2020, 2185, 2917, 3306
FblI GTMKAC 2 cut(s) 1657, 3276
FokI GGATG 8 cut(s) 166, 257, 920, 931, 1310, 1781, 2084, 3284
FriOI GRGCYC 1 cut(s) 3692
FspBI CTAG 7 cut(s) 1037, 1410, 3032, 3050, 3158, 3359, 3410
GlaI GCGC 3 cut(s) 938, 1727, 2908
GsaI CCCAGC 2 cut(s) 339, 1112
GsuI CTGGAG 1 cut(s) 1521
HaeII RGCGCY 1 cut(s) 1729
HaeIII GGCC 7 cut(s) 89, 258, 563, 1135, 1309, 3252, 3340
HapII CCGG 9 cut(s) 60, 2594, 2686, 3173, 3312, 3404, 3440, 3500, 3573
HgaI GACGC 1 cut(s) 1070
HhaI GCGC 3 cut(s) 939, 1728, 2909
Hin1I GRCGYC 2 cut(s) 1062, 1726
Hin6I GCGC 3 cut(s) 937, 1726, 2907
HinP1I GCGC 3 cut(s) 937, 1726, 2907
HindIII AAGCTT 4 cut(s) 1219, 2391, 2768, 3164
HpaII CCGG 9 cut(s) 60, 2594, 2686, 3173, 3312, 3404, 3440, 3500, 3573
HphI GGTGA 8 cut(s) 74, 724, 1380, 2179, 2180, 2671, 2927, 3301
Hpy166II GTNNAC 4 cut(s) 1388, 1658, 1921, 3277
Hpy8I GTNNAC 4 cut(s) 1388, 1658, 1921, 3277
HpyAV CCTTC 9 cut(s) 235, 248, 493, 550, 607, 1783, 2329, 2547, 2692
HpyCH4III ACNGT 8 cut(s) 812, 881, 1045, 1588, 1704, 3262, 3281, 3646
HpyCH4IV ACGT 5 cut(s) 1446, 3215, 3612, 3695, 3716
HpySE526I ACGT 5 cut(s) 1446, 3215, 3612, 3695, 3716
Hsp92I GRCGYC 2 cut(s) 1062, 1726
HspAI GCGC 3 cut(s) 937, 1726, 2907
KasI GGCGCC 1 cut(s) 1725
Kpn2I TCCGGA 1 cut(s) 3403
Ksp22I TGATCA 6 cut(s) 1101, 1615, 2020, 2185, 2917, 3306
LguI GCTCTTC 1 cut(s) 3313
LmnI GCTCC 6 cut(s) 208, 426, 736, 3035, 3349, 3702
LweI GCATC 8 cut(s) 144, 949, 953, 1335, 1609, 1759, 1900, 2498
MabI ACCWGGT 1 cut(s) 1642
MaeI CTAG 7 cut(s) 1037, 1410, 3032, 3050, 3158, 3359, 3410
MaeII ACGT 5 cut(s) 1446, 3215, 3612, 3695, 3716
MaeIII GTNAC 8 cut(s) 290, 396, 508, 1076, 1457, 1638, 1704, 3361
MfeI CAATTG 1 cut(s) 3324
MflI RGATCY 5 cut(s) 1236, 1778, 2338, 2954, 3388
MhlI GDGCHC 4 cut(s) 3215, 3232, 3535, 3692
Mly113I GGCGCC 1 cut(s) 1726
MlyI GAGTC 3 cut(s) 2222, 2337, 2527
MmeI TCCRAC 7 cut(s) 1447, 2256, 2740, 3157, 3249, 3633, 3705
MroI TCCGGA 1 cut(s) 3403
MroXI GAANNNNTTC 2 cut(s) 2089, 3567
MslI CAYNNNNRTG 4 cut(s) 60, 710, 1751, 2144
MspI CCGG 9 cut(s) 60, 2594, 2686, 3173, 3312, 3404, 3440, 3500, 3573
MspR9I CCNGG 9 cut(s) 206, 682, 780, 897, 1644, 1730, 1950, 2687, 3573
MunI CAATTG 1 cut(s) 3324
Mva1269I GAATGC 1 cut(s) 2629
MvaI CCWGG 7 cut(s) 206, 682, 780, 897, 1644, 1730, 1950
MvnI CGCG 2 cut(s) 3093, 3657
NarI GGCGCC 1 cut(s) 1726
NciI CCSGG 2 cut(s) 2687, 3573
NdeI CATATG 2 cut(s) 742, 1405
NheI GCTAGC 1 cut(s) 3157
NmuCI GTSAC 4 cut(s) 396, 508, 1457, 3361
NspI RCATGY 2 cut(s) 2947, 3194
NspV TTCGAA 1 cut(s) 1526
OliI CACNNNNGTG 3 cut(s) 60, 710, 1751
PaeR7I CTCGAG 1 cut(s) 120
PagI TCATGA 4 cut(s) 1098, 2145, 2476, 3487
PaqCI CACCTGC 1 cut(s) 2578
PasI CCCWGGG 1 cut(s) 779
PciI ACATGT 1 cut(s) 3190
PciSI GCTCTTC 1 cut(s) 3313
PctI GAATGC 1 cut(s) 2629
PdmI GAANNNNTTC 2 cut(s) 2089, 3567
Pfl23II CGTACG 1 cut(s) 3216
PflMI CCANNNNNTGG 2 cut(s) 430, 3684
PfoI TCCNGGA 1 cut(s) 2685
PinAI ACCGGT 1 cut(s) 3172
PleI GAGTC 3 cut(s) 2222, 2336, 2527
PluTI GGCGCC 1 cut(s) 1729
PmaCI CACGTG 1 cut(s) 1447
PmlI CACGTG 1 cut(s) 1447
PpsI GAGTC 3 cut(s) 2222, 2336, 2527
Ppu21I YACGTR 2 cut(s) 1447, 3216
PpuMI RGGWCCY 2 cut(s) 537, 616
PscI ACATGT 1 cut(s) 3190
PsiI TTATAA 2 cut(s) 1211, 2760
Psp5II RGGWCCY 2 cut(s) 537, 616
Psp6I CCWGG 7 cut(s) 204, 680, 778, 895, 1642, 1728, 1948
PspCI CACGTG 1 cut(s) 1447
PspFI CCCAGC 2 cut(s) 335, 1108
PspGI CCWGG 7 cut(s) 204, 680, 778, 895, 1642, 1728, 1948
PspLI CGTACG 1 cut(s) 3216
PspPI GGNCC 9 cut(s) 257, 282, 537, 561, 616, 684, 1089, 1307, 3170
PspPPI RGGWCCY 2 cut(s) 537, 616
PspXI VCTCGAGB 1 cut(s) 120
PstI CTGCAG 1 cut(s) 796
PsuI RGATCY 5 cut(s) 1236, 1778, 2338, 2954, 3388
RseI CAYNNNNRTG 4 cut(s) 60, 710, 1751, 2144
SapI GCTCTTC 1 cut(s) 3313
Sau96I GGNCC 9 cut(s) 257, 282, 537, 561, 616, 684, 1089, 1307, 3170
ScaI AGTACT 1 cut(s) 3733
SchI GAGTC 3 cut(s) 2222, 2337, 2527
ScrFI CCNGG 9 cut(s) 206, 682, 780, 897, 1644, 1730, 1950, 2687, 3573
SduI GDGCHC 4 cut(s) 3215, 3232, 3535, 3692
SexAI ACCWGGT 1 cut(s) 1642
SfaNI GCATC 8 cut(s) 144, 949, 953, 1335, 1609, 1759, 1900, 2498
SfcI CTRYAG 2 cut(s) 792, 3277
SfoI GGCGCC 1 cut(s) 1727
Sfr274I CTCGAG 1 cut(s) 120
SfuI TTCGAA 1 cut(s) 1526
SinI GGWCC 6 cut(s) 282, 537, 616, 684, 1089, 3170
SlaI CTCGAG 1 cut(s) 120
SmiMI CAYNNNNRTG 4 cut(s) 60, 710, 1751, 2144
SmlI CTYRAG 2 cut(s) 34, 120
SmoI CTYRAG 2 cut(s) 34, 120
SsiI CCGC 8 cut(s) 47, 340, 1030, 1132, 1310, 2652, 2742, 3091
SspDI GGCGCC 1 cut(s) 1725
SspI AATATT 1 cut(s) 2662
SspMI CTAG 7 cut(s) 1037, 1410, 3032, 3050, 3158, 3359, 3410
StyD4I CCNGG 9 cut(s) 204, 680, 778, 895, 1642, 1728, 1948, 2685, 3571
StyI CCWWGG 6 cut(s) 304, 1169, 1540, 1569, 3042, 3544
TaaI ACNGT 8 cut(s) 812, 881, 1045, 1588, 1704, 3262, 3281, 3646
TaiI ACGT 5 cut(s) 1449, 3218, 3615, 3698, 3719
TaqI TCGA 6 cut(s) 121, 472, 903, 1526, 1847, 2312
TatI WGTACW 3 cut(s) 1583, 2297, 3731
TauI GCSGC 3 cut(s) 49, 1135, 1312
TscAI CASTG 6 cut(s) 603, 1195, 1593, 1753, 3384, 3535
TseFI GTSAC 4 cut(s) 396, 508, 1457, 3361
Tsp45I GTSAC 4 cut(s) 396, 508, 1457, 3361
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 6 cut(s) 603, 1195, 1593, 1753, 3384, 3535
Van91I CCANNNNNTGG 2 cut(s) 430, 3684
VpaK11BI GGWCC 6 cut(s) 282, 537, 616, 684, 1089, 3170
XagI CCTNNNNNAGG 1 cut(s) 2846
XapI RAATTY 8 cut(s) 51, 630, 653, 760, 1142, 1243, 1528, 2255
XbaI TCTAGA 1 cut(s) 3049
XceI RCATGY 2 cut(s) 2947, 3194
XcmI CCANNNNNNNNNTGG 2 cut(s) 267, 3721
XhoI CTCGAG 1 cut(s) 120
XmiI GTMKAC 2 cut(s) 1657, 3276
XmnI GAANNNNTTC 2 cut(s) 2089, 3567
XspI CTAG 7 cut(s) 1037, 1410, 3032, 3050, 3158, 3359, 3410
ZrmI AGTACT 1 cut(s) 3733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.