Rh6CG405400

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000509
Physical Location & Seq
Reverse (-)
59115792 .. 59116902
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG405400.1

Sequence Viewer

Length: 873 bp
ATGAAACTTGGGTTGTTTGGCCTAAACAGTACAAACAAGCCAGGCTTTCACATGCTTGTTTCTTGGGTAAGCCCCGAAGACCCTGCTCGTGGCCTCTTCACCTTAACTGTTGATGGCACCAACTTAACAAAGCTTAAAGTTTGGCGAGGAGATGGAGCAAAAATGGATATTGCGTTTTGGGACGGACATGGGTTACAGTTTGTTTTTGAGAACTCAACAGGGAATAATAACTACAACTTTAGTTACCAGTCCAATAAATATGAGGCCTATTACACTTTTAGCAGCAGTCAGAAGTATGATCTCATGTGGTTTGTATTGGCTTCCACTGGAAACCTTGAACAGTATGTTATGTTGGACAAGAAGATTTCTTCTGTGAGTCATACTTTGTGTGAGGATGGTGGGATGTGCTTGACTTCAGTACCCTCTAAGTGTGACGATGGTGGTACTTTTCTTGAGATGAATGGTTCTTTGCCATCTACATATAATAGTGGTTCCATCGATACGAGGGCTAGTGATTGTGAAATTTTATGCAAGAACAATTGTTCTTGTACCGCATTTGCTACAGTTCAGAATGAAGAAACTGGATGTCAACTTTATTATGGGAGTAAACGTGAATTATTGAAGATTATAGAGAAGGGTCCAGGGATTATTTACATCCGCGGTGGCACTCCAAGTGATAGTAAGAAGTGGAAGCTGTGGTTGGCTATTGCAGTTCCTTTGGCTTTCCTCTTGGCGCTTATTCCAATCTCCTTGTCATGCTATTTGTGTCGACGTAAAGGTTTGAGTTTGGTTGTTATTAGGTTGAATACATTGCTATTTGTGATTGTTAGAATTAAATTGGGGAGAGTGCAGATGTCTGCTCTCTTACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

290

Amino Acids

32.22

Weight (kDa)

8.6

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 146 - 199 1.9e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 769
AccII CGCG 1 cut(s) 660
AciI CCGC 3 cut(s) 552, 658, 660
AcsI RAATTY 1 cut(s) 522
AcuI CTGAAG 1 cut(s) 399
AfaI GTAC 4 cut(s) 31, 420, 445, 550
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 338, 622, 805
AjnI CCWGG 2 cut(s) 40, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 2 cut(s) 133, 694
AluI AGCT 2 cut(s) 133, 694
AoxI GGCC 3 cut(s) 19, 91, 264
ApeKI GCWGC 1 cut(s) 282
ApoI RAATTY 1 cut(s) 522
AspLEI GCGC 1 cut(s) 736
AspS9I GGNCC 1 cut(s) 638
AsuHPI GGTGA 1 cut(s) 91
AvaII GGWCC 1 cut(s) 638
BaeI ACNNNNGTAYC 2 cut(s) 402, 435
BanI GGYRCC 1 cut(s) 116
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 294
BccI CCATC 6 cut(s) 107, 146, 389, 431, 481, 503
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 2 cut(s) 42, 642
BfaI CTAG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 561
BfoI RGCGCY 1 cut(s) 737
BisI GCNGC 1 cut(s) 283
BlsI GCNGC 1 cut(s) 284
Bme1390I CCNGG 2 cut(s) 42, 642
Bme18I GGWCC 1 cut(s) 638
BmgT120I GGNCC 1 cut(s) 638
BmiI GGNNCC 3 cut(s) 118, 493, 639
BmrFI CCNGG 2 cut(s) 42, 642
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 498
BsaJI CCNNGG 2 cut(s) 641, 658
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 247, 331, 586
Bse3DI GCAATG 1 cut(s) 809
BseBI CCWGG 2 cut(s) 42, 642
BseCI ATCGAT 1 cut(s) 498
BseDI CCNNGG 2 cut(s) 641, 658
BseGI GGATG 4 cut(s) 400, 408, 590, 654
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 809
BseNI ACTGG 3 cut(s) 247, 331, 586
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 294
BsgI GTGCAG 1 cut(s) 869
Bsh1236I CGCG 1 cut(s) 660
BshFI GGCC 3 cut(s) 21, 93, 266
BshNI GGYRCC 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 498
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 3 cut(s) 21, 93, 266
Bsp143I GATC 1 cut(s) 298
BspACI CCGC 3 cut(s) 552, 658, 660
BspANI GGCC 3 cut(s) 21, 93, 266
BspDI ATCGAT 1 cut(s) 498
BspFNI CGCG 1 cut(s) 660
BspLI GGNNCC 3 cut(s) 118, 493, 639
BspT107I GGYRCC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 809
BsrI ACTGG 3 cut(s) 247, 331, 586
BssECI CCNNGG 2 cut(s) 641, 658
BssMI GATC 1 cut(s) 298
BssSI CACGAG 1 cut(s) 87
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 42, 642
Bst4CI ACNGT 6 cut(s) 29, 109, 198, 342, 565, 870
Bst6I CTCTTC 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 426
BstDSI CCRYGG 1 cut(s) 658
BstF5I GGATG 4 cut(s) 400, 408, 590, 654
BstFNI CGCG 1 cut(s) 660
BstH2I RGCGCY 1 cut(s) 737
BstHHI GCGC 1 cut(s) 736
BstKTI GATC 1 cut(s) 301
BstMBI GATC 1 cut(s) 298
BstNI CCWGG 2 cut(s) 42, 642
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 2 cut(s) 40, 640
BstSFI CTRYAG 1 cut(s) 561
BstUI CGCG 1 cut(s) 660
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 84
Bsu15I ATCGAT 1 cut(s) 498
BsuRI GGCC 3 cut(s) 21, 93, 266
BsuTUI ATCGAT 1 cut(s) 498
BtgI CCRYGG 1 cut(s) 658
BtsCI GGATG 4 cut(s) 400, 408, 590, 654
BtsIMutI CAGTG 1 cut(s) 324
CfoI GCGC 1 cut(s) 736
Cfr13I GGNCC 1 cut(s) 638
Cfr42I CCGCGG 1 cut(s) 661
ClaI ATCGAT 1 cut(s) 498
Csp6I GTAC 4 cut(s) 30, 419, 444, 549
CviAII CATG 4 cut(s) 52, 188, 304, 756
CviQI GTAC 4 cut(s) 30, 419, 444, 549
DdeI CTNAG 1 cut(s) 426
DpnI GATC 1 cut(s) 300
DpnII GATC 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco147I AGGCCT 1 cut(s) 266
Eco47I GGWCC 1 cut(s) 638
Eco57I CTGAAG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 40, 640
FaeI CATG 4 cut(s) 55, 191, 307, 759
FalI AAGNNNNNCTT 2 cut(s) 29, 61
FaqI GGGAC 1 cut(s) 194
FatI CATG 4 cut(s) 51, 187, 303, 755
FblI GTMKAC 1 cut(s) 769
Fnu4HI GCNGC 1 cut(s) 283
FokI GGATG 4 cut(s) 407, 415, 597, 641
Fsp4HI GCNGC 1 cut(s) 283
FspBI CTAG 1 cut(s) 510
GlaI GCGC 1 cut(s) 735
GluI GCNGC 1 cut(s) 283
HaeII RGCGCY 1 cut(s) 737
HaeIII GGCC 3 cut(s) 21, 93, 266
HhaI GCGC 1 cut(s) 736
Hin1II CATG 4 cut(s) 55, 191, 307, 759
Hin6I GCGC 1 cut(s) 734
HinP1I GCGC 1 cut(s) 734
HincII GTYRAC 2 cut(s) 590, 770
HindII GTYRAC 2 cut(s) 590, 770
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 1 cut(s) 376
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 3 cut(s) 590, 608, 770
Hpy188I TCNGA 2 cut(s) 291, 570
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 3 cut(s) 590, 608, 770
Hpy99I CGWCG 1 cut(s) 774
HpyAV CCTTC 1 cut(s) 628
HpyCH4III ACNGT 6 cut(s) 29, 109, 198, 342, 565, 870
HpyCH4IV ACGT 2 cut(s) 610, 772
HpyCH4V TGCA 3 cut(s) 531, 710, 850
HpyF3I CTNAG 1 cut(s) 426
HpySE526I ACGT 2 cut(s) 610, 772
Hsp92II CATG 4 cut(s) 55, 191, 307, 759
HspAI GCGC 1 cut(s) 734
KspI CCGCGG 1 cut(s) 661
Kzo9I GATC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 27, 54, 96, 204, 260, 312, 567, 627, 654
Lsp1109I GCAGC 1 cut(s) 294
MaeI CTAG 1 cut(s) 510
MaeII ACGT 2 cut(s) 610, 772
MaeIII GTNAC 3 cut(s) 192, 242, 431
MalI GATC 1 cut(s) 300
MboI GATC 1 cut(s) 298
MboII GAAGA 6 cut(s) 88, 89, 360, 373, 587, 634
MfeI CAATTG 1 cut(s) 538
MluCI AATT 5 cut(s) 522, 538, 614, 831, 836
MlyI GAGTC 1 cut(s) 385
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 7 cut(s) 104, 140, 256, 385, 433, 498, 737
MseI TTAA 4 cut(s) 104, 125, 135, 834
MspA1I CMGCKG 1 cut(s) 660
MspR9I CCNGG 2 cut(s) 42, 642
MunI CAATTG 1 cut(s) 538
MvaI CCWGG 2 cut(s) 42, 642
MvnI CGCG 1 cut(s) 660
NdeII GATC 1 cut(s) 298
NlaIII CATG 4 cut(s) 55, 191, 307, 759
NlaIV GGNNCC 3 cut(s) 118, 493, 639
NmuCI GTSAC 1 cut(s) 431
NspI RCATGY 1 cut(s) 55
PceI AGGCCT 1 cut(s) 266
PkrI GCNGC 1 cut(s) 284
PleI GAGTC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 40, 640
PspGI CCWGG 2 cut(s) 40, 640
PspN4I GGNNCC 3 cut(s) 118, 493, 639
PspPI GGNCC 1 cut(s) 638
RsaI GTAC 4 cut(s) 31, 420, 445, 550
RsaNI GTAC 4 cut(s) 30, 419, 444, 549
SacII CCGCGG 1 cut(s) 661
SalI GTCGAC 1 cut(s) 768
SaqAI TTAA 4 cut(s) 104, 125, 135, 834
SatI GCNGC 1 cut(s) 283
Sau3AI GATC 1 cut(s) 298
Sau96I GGNCC 1 cut(s) 638
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 2 cut(s) 42, 642
SetI ASST 8 cut(s) 104, 135, 336, 613, 696, 775, 781, 803
SfcI CTRYAG 1 cut(s) 561
Sfr303I CCGCGG 1 cut(s) 661
SgrBI CCGCGG 1 cut(s) 661
SinI GGWCC 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 5 cut(s) 522, 538, 614, 831, 836
SseBI AGGCCT 1 cut(s) 266
SsiI CCGC 3 cut(s) 552, 658, 660
SspMI CTAG 1 cut(s) 510
StuI AGGCCT 1 cut(s) 266
StyD4I CCNGG 2 cut(s) 40, 640
TaaI ACNGT 6 cut(s) 29, 109, 198, 342, 565, 870
TaiI ACGT 2 cut(s) 613, 775
TaqI TCGA 2 cut(s) 498, 769
TasI AATT 5 cut(s) 522, 538, 614, 831, 836
TatI WGTACW 1 cut(s) 29
Tru1I TTAA 4 cut(s) 104, 125, 135, 834
Tru9I TTAA 4 cut(s) 104, 125, 135, 834
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 431
TseI GCWGC 1 cut(s) 282
Tsp45I GTSAC 1 cut(s) 431
TspDTI ATGAA 3 cut(s) 17, 473, 588
TspGWI ACGGA 1 cut(s) 198
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 1 cut(s) 522
XceI RCATGY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.