Rw6G034230

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
58810736 .. 58813088
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G034230.1

Sequence Viewer

Length: 1320 bp
ATGGCAAGCATGAGAATTACCGAAACCAAAGAGTTTTTTCCTCTTATATTGTGCTTGATATCGTTCTTCAGTAGCTTCTTTTCATTTTCGTCTCATGCAACAGATACACTTACATCCGAAGGCACACTAAGAAACAATGAAACCCTGGTATCAAATGGTGGGATTTTCGAGCTTGGCTTCTTCAGCACTGAAAGCTTTTCAGACTATCACTATCTGGGGATATGGTTGAGAGCTGATGCAAACAAGGTTGTCTGGGTTGACCGTGAAAATCCCATTTTGGGTTCATCTGGCTTGCTTCAAATTTGGTCTGGGAATTTGGTTCTCACGGACAGGCGACAAGTGCAATTGATAGTCAATTCTGGATATGTTGCCACTGCCACAACTAACACAAGTGCAATACTTCTTGACACTGGAAATTTGGTCCTTAAGGAAGCAGATACGGGTACTATTATCTGGCAGAGTTTTGATATTCCAAGCGATACGTATCTTCCTGGTATGAAACTTGGGTTGTTTGGCCTAAACAGTACAAACAAGCCAGCCTTTCACATGCTTGTTTCTTGGGTAAGCCCCGAAGACCCTGCTCGTGGCCTCTTCACCTTAACTGTTGATGGCACCAACTTAACAAAGCTTAAAGTTTGGCGAGGAGATGGAGCAAAAATGGATATTGCTTTTTGGGACGGACATGGGTTACAGTTTGTTTTTGAGAACTCAACAGGGAATAATAACTACAACTTTAGTTACCAGTCCAATAAATATGAGGCCTATTACACTTTTAGCAGCAGTCAGAAGTATGATCTCATGTGGTTTGTATTGGCTTCCACTGGAAACCTTGAACAGTATGTTATGTTGGACAAGAAGATTTCTTCTGTGAGTCATACTTTGTGTGAGGATGGTGGGATGTGCTTGACTTCAGTACCCTCTAAGTGTGACGATGGTGGTACTTTTCTTGAGATGAATGGTTCTTTGCCATCTACATATAATAGTGGTTCCATCGATACGAGGGCTAGTGATTGTGAAATTTTATGCAAGAACAATTGTTCTTGTACCGCATTTGCTTCAGTTCAGAATGAAGAAACTGGATGTCAACTTTATTATGGGAGTAAACGTGAATTATTGAAGATTATAGAGAAGGGTCCAGGGATTGTTTACATCCGCGGTGGCACTCCAAGTGATAGTAAGAAGTGGAAGCTGTGGTTGGCTATTGCAGTTCCTTTGGCTTTCCTCTTGGCTCTTATTCCAATCTCCTTGTCATGCTATTTGTGTCGACGTAAAGGTTTGAGTTTGGTTGTTATTAGGTTGAATACTATTTGTGATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

439

Amino Acids

48.62

Weight (kDa)

5.38

Isoelectric Point (pI)

31.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 83 - 171 2.3e-22 D-mannose binding lectin
PAN_2 PF08276 311 - 364 4.3e-06 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 611
AccI GTMKAC 1 cut(s) 1264
AccII CGCG 1 cut(s) 1155
AciI CCGC 3 cut(s) 1047, 1153, 1155
AcsI RAATTY 4 cut(s) 300, 313, 415, 1017
AcuI CTGAAG 4 cut(s) 52, 166, 894, 1041
AfaI GTAC 5 cut(s) 445, 526, 915, 940, 1045
AfiI CCNNNNNNNGG 2 cut(s) 278, 584
AflII CTTAAG 1 cut(s) 425
AgsI TTSAA 4 cut(s) 299, 833, 1117, 1300
AjnI CCWGG 3 cut(s) 144, 490, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 1178, 1210
AluBI AGCT 6 cut(s) 75, 172, 195, 233, 628, 1189
AluI AGCT 6 cut(s) 75, 172, 195, 233, 628, 1189
Alw26I GTCTC 1 cut(s) 96
AoxI GGCC 3 cut(s) 514, 586, 759
ApeKI GCWGC 1 cut(s) 777
ApoI RAATTY 4 cut(s) 300, 313, 415, 1017
AspS9I GGNCC 2 cut(s) 421, 1133
AsuHPI GGTGA 1 cut(s) 586
AvaII GGWCC 2 cut(s) 421, 1133
BaeI ACNNNNGTAYC 4 cut(s) 132, 165, 897, 930
BanI GGYRCC 1 cut(s) 611
BauI CACGAG 1 cut(s) 582
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 1 cut(s) 789
BccI CCATC 6 cut(s) 602, 641, 884, 926, 976, 998
BcgI CGANNNNNNTGC 2 cut(s) 560, 594
BciT130I CCWGG 3 cut(s) 146, 492, 1137
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 1 cut(s) 1005
BfrI CTTAAG 1 cut(s) 425
BisI GCNGC 1 cut(s) 778
BlsI GCNGC 1 cut(s) 779
Bme1390I CCNGG 3 cut(s) 146, 492, 1137
Bme18I GGWCC 2 cut(s) 421, 1133
BmgT120I GGNCC 2 cut(s) 421, 1133
BmiI GGNNCC 3 cut(s) 613, 988, 1134
BmrFI CCNGG 3 cut(s) 146, 492, 1137
BmsI GCATC 1 cut(s) 226
BpiI GAAGAC 1 cut(s) 579
BpuEI CTTGAG 1 cut(s) 968
Bsa29I ATCGAT 1 cut(s) 993
BsaAI YACGTR 1 cut(s) 483
BsaBI GATNNNNATC 1 cut(s) 483
BsaJI CCNNGG 3 cut(s) 144, 1136, 1153
BsaXI ACNNNNNCTCC 2 cut(s) 1090, 1120
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 584
Bse1I ACTGG 4 cut(s) 415, 742, 826, 1081
Bse8I GATNNNNATC 1 cut(s) 483
BseBI CCWGG 3 cut(s) 146, 492, 1137
BseCI ATCGAT 1 cut(s) 993
BseDI CCNNGG 3 cut(s) 144, 1136, 1153
BseGI GGATG 5 cut(s) 113, 895, 903, 1085, 1149
BseJI GATNNNNATC 1 cut(s) 483
BseLI CCNNNNNNNGG 2 cut(s) 278, 584
BseNI ACTGG 4 cut(s) 415, 742, 826, 1081
BseRI GAGGAG 1 cut(s) 657
BseXI GCAGC 1 cut(s) 789
Bsh1236I CGCG 1 cut(s) 1155
BshFI GGCC 3 cut(s) 516, 588, 761
BshNI GGYRCC 1 cut(s) 611
BshVI ATCGAT 1 cut(s) 993
BslFI GGGAC 1 cut(s) 689
BslI CCNNNNNNNGG 2 cut(s) 278, 584
BsmAI GTCTC 1 cut(s) 96
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 689
BsnI GGCC 3 cut(s) 516, 588, 761
Bsp143I GATC 1 cut(s) 793
BspACI CCGC 3 cut(s) 1047, 1153, 1155
BspANI GGCC 3 cut(s) 516, 588, 761
BspDI ATCGAT 1 cut(s) 993
BspFNI CGCG 1 cut(s) 1155
BspLI GGNNCC 3 cut(s) 613, 988, 1134
BspT107I GGYRCC 1 cut(s) 611
BspTI CTTAAG 1 cut(s) 425
BsrI ACTGG 4 cut(s) 415, 742, 826, 1081
BssECI CCNNGG 3 cut(s) 144, 1136, 1153
BssMI GATC 1 cut(s) 793
BssSI CACGAG 1 cut(s) 582
Bst2BI CACGAG 1 cut(s) 582
Bst2UI CCWGG 3 cut(s) 146, 492, 1137
Bst4CI ACNGT 5 cut(s) 263, 524, 604, 693, 837
Bst6I CTCTTC 1 cut(s) 596
BstAFI CTTAAG 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 3 cut(s) 7, 293, 537
BstDEI CTNAG 2 cut(s) 128, 921
BstDSI CCRYGG 1 cut(s) 1153
BstF5I GGATG 5 cut(s) 113, 895, 903, 1085, 1149
BstFNI CGCG 1 cut(s) 1155
BstKTI GATC 1 cut(s) 796
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 1 cut(s) 793
BstMWI GCNNNNNNNGC 3 cut(s) 183, 192, 340
BstNI CCWGG 3 cut(s) 146, 492, 1137
BstNSI RCATGY 1 cut(s) 550
BstSCI CCNGG 3 cut(s) 144, 490, 1135
BstSNI TACGTA 1 cut(s) 483
BstUI CGCG 1 cut(s) 1155
BstV1I GCAGC 1 cut(s) 789
BstV2I GAAGAC 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 993
BsuRI GGCC 3 cut(s) 516, 588, 761
BsuTUI ATCGAT 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 1153
BtsCI GGATG 5 cut(s) 113, 895, 903, 1085, 1149
BtsI GCAGTG 1 cut(s) 372
BtsIMutI CAGTG 4 cut(s) 186, 372, 408, 819
Cac8I GCNNGC 3 cut(s) 7, 293, 537
Cfr13I GGNCC 2 cut(s) 421, 1133
Cfr42I CCGCGG 1 cut(s) 1156
ClaI ATCGAT 1 cut(s) 993
Csp6I GTAC 5 cut(s) 444, 525, 914, 939, 1044
CviAII CATG 6 cut(s) 10, 95, 547, 683, 799, 1251
CviQI GTAC 5 cut(s) 444, 525, 914, 939, 1044
DdeI CTNAG 2 cut(s) 128, 921
DpnI GATC 1 cut(s) 795
DpnII GATC 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco105I TACGTA 1 cut(s) 483
Eco147I AGGCCT 1 cut(s) 761
Eco32I GATATC 1 cut(s) 60
Eco47I GGWCC 2 cut(s) 421, 1133
Eco57I CTGAAG 4 cut(s) 52, 166, 894, 1041
EcoRII CCWGG 3 cut(s) 144, 490, 1135
EcoRV GATATC 1 cut(s) 60
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 6 cut(s) 13, 98, 550, 686, 802, 1254
FalI AAGNNNNNCTT 2 cut(s) 524, 556
FaqI GGGAC 1 cut(s) 689
FatI CATG 6 cut(s) 9, 94, 546, 682, 798, 1250
FblI GTMKAC 1 cut(s) 1264
Fnu4HI GCNGC 1 cut(s) 778
FokI GGATG 5 cut(s) 100, 902, 910, 1092, 1136
Fsp4HI GCNGC 1 cut(s) 778
FspBI CTAG 1 cut(s) 1005
GluI GCNGC 1 cut(s) 778
HaeIII GGCC 3 cut(s) 516, 588, 761
Hin1II CATG 6 cut(s) 13, 98, 550, 686, 802, 1254
HincII GTYRAC 3 cut(s) 259, 1085, 1265
HindII GTYRAC 3 cut(s) 259, 1085, 1265
HindIII AAGCTT 2 cut(s) 193, 626
HinfI GANTC 1 cut(s) 871
HphI GGTGA 1 cut(s) 586
Hpy166II GTNNAC 5 cut(s) 259, 1085, 1103, 1147, 1265
Hpy188I TCNGA 4 cut(s) 118, 202, 786, 1065
Hpy188III TCNNGA 3 cut(s) 360, 404, 947
Hpy8I GTNNAC 5 cut(s) 259, 1085, 1103, 1147, 1265
Hpy99I CGWCG 1 cut(s) 1269
HpyAV CCTTC 2 cut(s) 113, 1123
HpyCH4III ACNGT 5 cut(s) 263, 524, 604, 693, 837
HpyCH4IV ACGT 3 cut(s) 482, 1105, 1267
HpyCH4V TGCA 6 cut(s) 98, 239, 343, 395, 1026, 1205
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 192, 340
HpyF3I CTNAG 2 cut(s) 128, 921
HpySE526I ACGT 3 cut(s) 482, 1105, 1267
Hsp92II CATG 6 cut(s) 13, 98, 550, 686, 802, 1254
KspI CCGCGG 1 cut(s) 1156
Kzo9I GATC 1 cut(s) 793
LmnI GCTCC 1 cut(s) 650
Lsp1109I GCAGC 1 cut(s) 789
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 1005
MaeII ACGT 3 cut(s) 482, 1105, 1267
MaeIII GTNAC 3 cut(s) 687, 737, 926
MalI GATC 1 cut(s) 795
MboI GATC 1 cut(s) 793
MboII GAAGA 9 cut(s) 58, 172, 479, 583, 584, 855, 868, 1082, 1129
MfeI CAATTG 2 cut(s) 344, 1033
MluCI AATT 9 cut(s) 15, 300, 313, 344, 355, 415, 1017, 1033, 1109
MlyI GAGTC 1 cut(s) 880
MmeI TCCRAC 1 cut(s) 828
MnlI CCTC 8 cut(s) 51, 599, 635, 751, 880, 928, 993, 1232
MseI TTAA 4 cut(s) 426, 599, 620, 630
MspA1I CMGCKG 1 cut(s) 1155
MspCI CTTAAG 1 cut(s) 425
MspR9I CCNGG 3 cut(s) 146, 492, 1137
MunI CAATTG 2 cut(s) 344, 1033
MvaI CCWGG 3 cut(s) 146, 492, 1137
MvnI CGCG 1 cut(s) 1155
MwoI GCNNNNNNNGC 3 cut(s) 183, 192, 340
NdeII GATC 1 cut(s) 793
NlaIII CATG 6 cut(s) 13, 98, 550, 686, 802, 1254
NlaIV GGNNCC 3 cut(s) 613, 988, 1134
NmuCI GTSAC 1 cut(s) 926
NspI RCATGY 1 cut(s) 550
PceI AGGCCT 1 cut(s) 761
PkrI GCNGC 1 cut(s) 779
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
Ppu21I YACGTR 1 cut(s) 483
Psp6I CCWGG 3 cut(s) 144, 490, 1135
PspGI CCWGG 3 cut(s) 144, 490, 1135
PspN4I GGNNCC 3 cut(s) 613, 988, 1134
PspPI GGNCC 2 cut(s) 421, 1133
RsaI GTAC 5 cut(s) 445, 526, 915, 940, 1045
RsaNI GTAC 5 cut(s) 444, 525, 914, 939, 1044
SacII CCGCGG 1 cut(s) 1156
SalI GTCGAC 1 cut(s) 1263
SaqAI TTAA 4 cut(s) 426, 599, 620, 630
SatI GCNGC 1 cut(s) 778
Sau3AI GATC 1 cut(s) 793
Sau96I GGNCC 2 cut(s) 421, 1133
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 3 cut(s) 146, 492, 1137
SfaNI GCATC 1 cut(s) 226
Sfr303I CCGCGG 1 cut(s) 1156
SgrBI CCGCGG 1 cut(s) 1156
SinI GGWCC 2 cut(s) 421, 1133
SmlI CTYRAG 2 cut(s) 425, 947
SmoI CTYRAG 2 cut(s) 425, 947
SnaBI TACGTA 1 cut(s) 483
Sse9I AATT 9 cut(s) 15, 300, 313, 344, 355, 415, 1017, 1033, 1109
SseBI AGGCCT 1 cut(s) 761
SsiI CCGC 3 cut(s) 1047, 1153, 1155
SspMI CTAG 1 cut(s) 1005
StuI AGGCCT 1 cut(s) 761
StyD4I CCNGG 3 cut(s) 144, 490, 1135
TaaI ACNGT 5 cut(s) 263, 524, 604, 693, 837
TaiI ACGT 3 cut(s) 485, 1108, 1270
TaqI TCGA 3 cut(s) 168, 993, 1264
TasI AATT 9 cut(s) 15, 300, 313, 344, 355, 415, 1017, 1033, 1109
TatI WGTACW 1 cut(s) 524
Tru1I TTAA 4 cut(s) 426, 599, 620, 630
Tru9I TTAA 4 cut(s) 426, 599, 620, 630
TscAI CASTG 4 cut(s) 193, 379, 415, 826
TseFI GTSAC 1 cut(s) 926
TseI GCWGC 1 cut(s) 777
Tsp45I GTSAC 1 cut(s) 926
TspDTI ATGAA 6 cut(s) 72, 153, 273, 512, 968, 1083
TspGWI ACGGA 2 cut(s) 341, 693
TspRI CASTG 4 cut(s) 193, 379, 415, 826
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 421, 1133
XapI RAATTY 4 cut(s) 300, 313, 415, 1017
XceI RCATGY 1 cut(s) 550
XmiI GTMKAC 1 cut(s) 1264
XspI CTAG 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.