Rh6DG392100

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000509
Physical Location & Seq
Reverse (-)
58438186 .. 58438776
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG392100.1

Sequence Viewer

Length: 591 bp
ATGGCCATGTTTCTTCCTCTAATTTGCTTGATATCATCATTCTTTAGCTTCCTTTCTTTTTCATCTCCTGCAACAGATACTCTTACACCTTCAGACACATTGAGAGATGGTCAAATCCTGGTTTCAGCTGGTGGAGTTTTTGAGCTTGGCTTCTTCGCTGAAAGCTTTTCAGGCTATCACTATCTGGGAATTTGGTTGAGAGCCGATGCAAGCAAGGTTGTCTGGGTTGATCGCGATACTCCCATATTGGATTCATCAGGCATGCTTCAAATCCTGTCTGGGAATTTGGTTCTCACAGACCGTCGACAAGTGCAATTGATAGTCAACACAGGAAGTCTTGCCACGGCCACAACTGCTAACACAAGTGCAACGCTTCTTGATACTGGAAATTTTGTCCTCAAGGAAGCAGATACAGGTAATACTATATGGCAAAGTTTTGATATACCGAGTGATACTTATCTTCCTGGGATGAAACTTGGGTTGTTTGGCCGAAACATATTTCACAGTATTGTTTCTTGGGCAAGCCCCCAAAACCCAGCTCGTGGCATCTTCACCTTAAGCATTAATAGCAACGACACCAGAAAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

196

Amino Acids

21.33

Weight (kDa)

4.96

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 73 - 173 3.4e-24 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 542
AccI GTMKAC 1 cut(s) 304
AccII CGCG 1 cut(s) 234
AcoI YGGCCR 3 cut(s) 3, 345, 487
AcsI RAATTY 3 cut(s) 189, 283, 388
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 542
AflII CTTAAG 1 cut(s) 556
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 2 cut(s) 117, 463
AluBI AGCT 6 cut(s) 48, 128, 145, 165, 539, 586
AluI AGCT 6 cut(s) 48, 128, 145, 165, 539, 586
AoxI GGCC 3 cut(s) 3, 345, 487
ApoI RAATTY 3 cut(s) 189, 283, 388
AseI ATTAAT 1 cut(s) 564
AsuHPI GGTGA 1 cut(s) 544
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 540
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 119, 465
BfrI CTTAAG 1 cut(s) 556
Bme1390I CCNGG 2 cut(s) 119, 465
BmrFI CCNGG 2 cut(s) 119, 465
BmsI GCATC 2 cut(s) 196, 555
BpuEI CTTGAG 1 cut(s) 383
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 2 cut(s) 342, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 388
Bse8I GATNNNNATC 1 cut(s) 456
BseBI CCWGG 2 cut(s) 119, 465
BseDI CCNNGG 2 cut(s) 342, 464
BseGI GGATG 1 cut(s) 474
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 542
BseNI ACTGG 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 234
BshFI GGCC 3 cut(s) 5, 347, 489
BslI CCNNNNNNNGG 1 cut(s) 542
BsnI GGCC 3 cut(s) 5, 347, 489
Bsp143I GATC 1 cut(s) 229
Bsp68I TCGCGA 1 cut(s) 234
BspANI GGCC 3 cut(s) 5, 347, 489
BspFNI CGCG 1 cut(s) 234
BspTI CTTAAG 1 cut(s) 556
BsrI ACTGG 1 cut(s) 388
BssECI CCNNGG 2 cut(s) 342, 464
BssMI GATC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 540
Bst2BI CACGAG 1 cut(s) 540
Bst2UI CCWGG 2 cut(s) 119, 465
Bst4CI ACNGT 2 cut(s) 302, 506
BstAFI CTTAAG 1 cut(s) 556
BstC8I GCNNGC 3 cut(s) 211, 263, 523
BstDSI CCRYGG 1 cut(s) 342
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 3 cut(s) 171, 353, 567
BstNI CCWGG 2 cut(s) 119, 465
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 117, 463
BstUI CGCG 1 cut(s) 234
BsuRI GGCC 3 cut(s) 5, 347, 489
BtgI CCRYGG 1 cut(s) 342
BtsCI GGATG 1 cut(s) 474
BtuMI TCGCGA 1 cut(s) 234
Cac8I GCNNGC 3 cut(s) 211, 263, 523
CviAII CATG 2 cut(s) 7, 262
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 3 cut(s) 3, 345, 487
Eco32I GATATC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 117, 463
EcoRV GATATC 1 cut(s) 33
FaeI CATG 2 cut(s) 10, 265
FaiI YATR 7 cut(s) 8, 245, 263, 425, 427, 443, 497
FatI CATG 2 cut(s) 6, 261
FblI GTMKAC 1 cut(s) 304
FokI GGATG 1 cut(s) 481
GsaI CCCAGC 1 cut(s) 539
HaeIII GGCC 3 cut(s) 5, 347, 489
Hin1II CATG 2 cut(s) 10, 265
HincII GTYRAC 2 cut(s) 305, 325
HindII GTYRAC 2 cut(s) 305, 325
HindIII AAGCTT 2 cut(s) 163, 584
HinfI GANTC 1 cut(s) 251
HphI GGTGA 1 cut(s) 544
Hpy166II GTNNAC 2 cut(s) 305, 325
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 233, 377
Hpy8I GTNNAC 2 cut(s) 305, 325
Hpy99I CGWCG 1 cut(s) 306
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 302, 506
HpyCH4V TGCA 4 cut(s) 71, 209, 313, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 353, 567
Hsp92II CATG 2 cut(s) 10, 265
Kzo9I GATC 1 cut(s) 229
LweI GCATC 2 cut(s) 196, 555
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 4 cut(s) 5, 145, 452, 541
MfeI CAATTG 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 21, 189, 283, 314, 388
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 27, 407
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 557, 564
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 128
MspCI CTTAAG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 119, 465
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 2 cut(s) 119, 465
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 171, 353, 567
NdeII GATC 1 cut(s) 229
NlaIII CATG 2 cut(s) 10, 265
NruI TCGCGA 1 cut(s) 234
NspI RCATGY 1 cut(s) 265
PaeI GCATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 251
PflMI CCANNNNNTGG 1 cut(s) 542
PshBI ATTAAT 1 cut(s) 564
Psp6I CCWGG 2 cut(s) 117, 463
PspFI CCCAGC 1 cut(s) 535
PspGI CCWGG 2 cut(s) 117, 463
PvuII CAGCTG 1 cut(s) 128
RruI TCGCGA 1 cut(s) 234
SalI GTCGAC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 557, 564
Sau3AI GATC 1 cut(s) 229
ScrFI CCNGG 2 cut(s) 119, 465
SfaNI GCATC 2 cut(s) 196, 555
SmlI CTYRAG 2 cut(s) 398, 556
SmoI CTYRAG 2 cut(s) 398, 556
SphI GCATGC 1 cut(s) 265
Sse9I AATT 5 cut(s) 21, 189, 283, 314, 388
StyD4I CCNGG 2 cut(s) 117, 463
TaaI ACNGT 2 cut(s) 302, 506
TaqI TCGA 1 cut(s) 304
TasI AATT 5 cut(s) 21, 189, 283, 314, 388
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 2 cut(s) 557, 564
Tru9I TTAA 2 cut(s) 557, 564
TspDTI ATGAA 3 cut(s) 51, 243, 485
Van91I CCANNNNNTGG 1 cut(s) 542
Vha464I CTTAAG 1 cut(s) 556
VspI ATTAAT 1 cut(s) 564
XapI RAATTY 3 cut(s) 189, 283, 388
XceI RCATGY 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.