RchiOBHm_Chr6g0298481

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59889198 .. 59890273
1076 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26795

Sequence Viewer

Length: 819 bp
ATGGCCAGCATCAAAGGAGAATTTCTTCATATTGTTTGTTTGATATCATCCTATACCTTCTTTTCATTTTCATCTCATGCATTAACTGATACACTTACACCTGAAGAAACACTAACAAATAATCAAACCTTGGTTTCAGCTGGTAGGATTTTTGAGCTTGGCTTCTTCGGTGATGACTTTTCAGGCAATTATTATATTGGCATTTGGTTCAAAGCCGATAAGAACAAGGTTGTCTGGGTTGGTAACCGTGAAATTCCCATATCAGATTCCTCAGGTATTCTTCAAATACGATCTGGGAATCTGGTTTTCATGGACAGACGTCAAGTTCCTTGGCTACTCAATTCTGGAAATGTTGCCACAGCCATAAACACAACTGCAACACTTCTTGATTCAGGAAATTTTGTCCTTAAAGAAGAATATACAGGTACTGTTCTATGGCAAAGTTTTGATAATCCAACTGATACTTATCTTCCTGGGATGAAACTTGGTTGGTCTGCACTAAACACTAACCAACCAAGCTTTCACCTTTTTGTTTCTTGGGTAAGCCCCCAAAGCCCTGCTCGTGGCCTTTTCACCTTAACCATGGACAGGATCAACTTTACAAAGATTCAGGTCTGGCGAGGAGATAAAGTTCGAATGGATATTGGGTTTTGGGATGGACATAACCTGCGGTTTATTTTTGACAACTCAACAAGTGGAAATGACTACAATTTTAGTCACCATTCCACTGCAGATGAAGCCTACTTTAATTTTAGAGGCAATAAGAATTATGACATCGTGTGGTTTGTGATGGCTTCCACGGGAAAACTAGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

272

Amino Acids

30.85

Weight (kDa)

5.64

Isoelectric Point (pI)

26.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 77 - 170 2.5e-27 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 675
AciI CCGC 1 cut(s) 670
AclWI GGATC 1 cut(s) 599
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 20, 252, 397
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 319
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 2 cut(s) 563, 588
AgsI TTSAA 2 cut(s) 211, 284
AjnI CCWGG 1 cut(s) 472
AjuI GAANNNNNNNTTGG 2 cut(s) 504, 536
AloI GAACNNNNNNTCC 2 cut(s) 615, 647
AluBI AGCT 3 cut(s) 140, 157, 519
AluI AGCT 3 cut(s) 140, 157, 519
AlwI GGATC 1 cut(s) 599
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 2 cut(s) 3, 565
ApoI RAATTY 3 cut(s) 20, 252, 397
Asp700I GAANNNNTTC 1 cut(s) 24
AsuHPI GGTGA 4 cut(s) 182, 515, 565, 710
AsuII TTCGAA 1 cut(s) 634
AxyI CCTNAGG 1 cut(s) 271
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 561
BccI CCATC 2 cut(s) 650, 784
BciT130I CCWGG 1 cut(s) 474
BfaI CTAG 1 cut(s) 809
BfmI CTRYAG 1 cut(s) 729
BfuAI ACCTGC 1 cut(s) 675
Bme1390I CCNGG 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 18
BoxI GACNNNNGTC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 319
BsaJI CCNNGG 5 cut(s) 129, 329, 473, 582, 798
BsaXI ACNNNNNCTCC 2 cut(s) 615, 645
Bsc4I CCNNNNNNNGG 2 cut(s) 563, 588
Bse21I CCTNAGG 1 cut(s) 271
Bse8I GATNNNNATC 1 cut(s) 465
BseBI CCWGG 1 cut(s) 474
BseDI CCNNGG 5 cut(s) 129, 329, 473, 582, 798
BseGI GGATG 3 cut(s) 47, 483, 661
BseJI GATNNNNATC 1 cut(s) 465
BseLI CCNNNNNNNGG 2 cut(s) 563, 588
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 636
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 2 cut(s) 5, 567
BslI CCNNNNNNNGG 2 cut(s) 563, 588
BsnI GGCC 2 cut(s) 5, 567
Bsp119I TTCGAA 1 cut(s) 634
Bsp143I GATC 3 cut(s) 290, 591, 811
Bsp19I CCATGG 1 cut(s) 582
BspACI CCGC 1 cut(s) 670
BspANI GGCC 2 cut(s) 5, 567
BspCNI CTCAG 1 cut(s) 284
BspMAI CTGCAG 1 cut(s) 733
BspMI ACCTGC 1 cut(s) 675
BspPI GGATC 1 cut(s) 599
BspT104I TTCGAA 1 cut(s) 634
BssECI CCNNGG 5 cut(s) 129, 329, 473, 582, 798
BssMI GATC 3 cut(s) 290, 591, 811
BssNI GRCGYC 1 cut(s) 319
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 3 cut(s) 129, 329, 582
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 474
Bst4CI ACNGT 2 cut(s) 248, 430
BstACI GRCGYC 1 cut(s) 319
BstBI TTCGAA 1 cut(s) 634
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 2 cut(s) 582, 798
BstEII GGTNACC 1 cut(s) 242
BstF5I GGATG 3 cut(s) 47, 483, 661
BstKTI GATC 3 cut(s) 293, 594, 814
BstMBI GATC 3 cut(s) 290, 591, 811
BstMWI GCNNNNNNNGC 2 cut(s) 552, 737
BstNI CCWGG 1 cut(s) 474
BstPAI GACNNNNGTC 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 472
BstSFI CTRYAG 1 cut(s) 729
Bsu36I CCTNAGG 1 cut(s) 271
BsuRI GGCC 2 cut(s) 5, 567
BtgI CCRYGG 2 cut(s) 582, 798
BtsCI GGATG 3 cut(s) 47, 483, 661
BtsI GCAGTG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 726
BveI ACCTGC 1 cut(s) 675
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 428
Csp6I GTAC 1 cut(s) 426
CviAII CATG 3 cut(s) 77, 310, 583
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 1 cut(s) 271
DpnI GATC 3 cut(s) 292, 593, 813
DpnII GATC 3 cut(s) 290, 591, 811
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 129, 329, 582
Eco32I GATATC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 242
EcoRII CCWGG 1 cut(s) 472
EcoRV GATATC 1 cut(s) 45
EcoT14I CCWWGG 3 cut(s) 129, 329, 582
EcoT22I ATGCAT 1 cut(s) 82
ErhI CCWWGG 3 cut(s) 129, 329, 582
FaeI CATG 3 cut(s) 80, 313, 586
FatI CATG 3 cut(s) 76, 309, 582
FokI GGATG 3 cut(s) 34, 490, 668
FspBI CTAG 1 cut(s) 809
HaeIII GGCC 2 cut(s) 5, 567
Hin1I GRCGYC 1 cut(s) 319
Hin1II CATG 3 cut(s) 80, 313, 586
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 4 cut(s) 266, 298, 389, 607
HphI GGTGA 4 cut(s) 182, 515, 565, 710
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 3 cut(s) 345, 386, 393
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 248, 430
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 80, 377, 497, 731
HpyF10VI GCNNNNNNNGC 2 cut(s) 552, 737
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 1 cut(s) 319
Hsp92II CATG 3 cut(s) 80, 313, 586
Kzo9I GATC 3 cut(s) 290, 591, 811
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 809
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 2 cut(s) 242, 716
MalI GATC 3 cut(s) 292, 593, 813
MboI GATC 3 cut(s) 290, 591, 811
MboII GAAGA 6 cut(s) 17, 116, 157, 272, 425, 461
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 20, 187, 252, 340, 397, 709, 748, 766
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 3 cut(s) 280, 614, 749
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 24
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 83, 408, 578, 747
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 474
MvaI CCWGG 1 cut(s) 474
MwoI GCNNNNNNNGC 2 cut(s) 552, 737
NcoI CCATGG 1 cut(s) 582
NdeII GATC 3 cut(s) 290, 591, 811
NlaIII CATG 3 cut(s) 80, 313, 586
NmuCI GTSAC 1 cut(s) 716
NsiI ATGCAT 1 cut(s) 82
NspV TTCGAA 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 24
PfeI GAWTC 4 cut(s) 266, 298, 389, 607
PshAI GACNNNNGTC 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 472
PspEI GGTNACC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 472
PstI CTGCAG 1 cut(s) 733
PstNI CAGNNNCTG 1 cut(s) 428
PvuII CAGCTG 1 cut(s) 140
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SaqAI TTAA 4 cut(s) 83, 408, 578, 747
Sau3AI GATC 3 cut(s) 290, 591, 811
ScrFI CCNGG 1 cut(s) 474
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 729
SfuI TTCGAA 1 cut(s) 634
Sse9I AATT 8 cut(s) 20, 187, 252, 340, 397, 709, 748, 766
SsiI CCGC 1 cut(s) 670
SspMI CTAG 1 cut(s) 809
StyD4I CCNGG 1 cut(s) 472
StyI CCWWGG 3 cut(s) 129, 329, 582
TaaI ACNGT 2 cut(s) 248, 430
TaiI ACGT 1 cut(s) 322
TaqI TCGA 1 cut(s) 634
TasI AATT 8 cut(s) 20, 187, 252, 340, 397, 709, 748, 766
TfiI GAWTC 4 cut(s) 266, 298, 389, 607
Tru1I TTAA 4 cut(s) 83, 408, 578, 747
Tru9I TTAA 4 cut(s) 83, 408, 578, 747
TscAI CASTG 1 cut(s) 733
TseFI GTSAC 1 cut(s) 716
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 6 cut(s) 17, 54, 60, 298, 494, 750
TspRI CASTG 1 cut(s) 733
XapI RAATTY 3 cut(s) 20, 252, 397
XmnI GAANNNNTTC 1 cut(s) 24
XspI CTAG 1 cut(s) 809
ZraI GACGTC 1 cut(s) 320
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.