RchiOBHm_Chr6g0298501

Domain of unknown function (DUF3403)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000509
Physical Location & Seq
Reverse (-)
59895391 .. 59895948
558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26797

Sequence Viewer

Length: 465 bp
ATGCCTAGCACGAGGGTTATCATCAGAAAAGAATTGTGTCCTCTTATCTGCTTCATATTTTTATTTAGCTTCTTTTTATCTTCATCTTTTGCAACAGACACACTAACACCCGGAGACACACTTACAGTCAATCAAACCCTGGTTTCAGCTGGTGGAGTTTTCGAGCTCGGCTTCTTCAAAAGTGACTTTTCAGGTAGTTACTATCTAGGAATTTGGTTCAGAGCCGATGCAAACAAGGTTGTTTGGGTTGGTAACCGCAGAGTTCCCATATTGGACGCTTCAGGAAGTCTTCAAATACTATCTGGGAATCTGGTTCTTATAGACCGCCGTCAAAACCCTTTGCTAGTCAGTACAGGAAATGTTGCCATGGCCATAAACGCAACCGCAACACTTCTTGACTCTGGAAATTTTATCCTTAAAGAAGAAAATACAGGCATGATTTGCACTTTTGATAAGCTTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

154

Amino Acids

16.85

Weight (kDa)

6.18

Isoelectric Point (pI)

32.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 80 - 144 1.5e-12 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 256, 325, 384
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 2 cut(s) 210, 406
AcuI CTGAAG 1 cut(s) 264
AfaI GTAC 1 cut(s) 352
AgsI TTSAA 2 cut(s) 178, 293
AjnI CCWGG 1 cut(s) 138
AluBI AGCT 4 cut(s) 69, 149, 166, 457
AluI AGCT 4 cut(s) 69, 149, 166, 457
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 108
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 2 cut(s) 210, 406
AsuC2I CCSGG 1 cut(s) 111
BalI TGGCCA 1 cut(s) 371
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 10
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 168
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 140
BcnI CCSGG 1 cut(s) 111
BcoDI GTCTC 1 cut(s) 108
BfaI CTAG 3 cut(s) 6, 206, 344
Bme1390I CCNGG 2 cut(s) 111, 140
BmrFI CCNGG 2 cut(s) 111, 140
BmsI GCATC 1 cut(s) 217
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 138, 366
BseBI CCWGG 1 cut(s) 140
BseDI CCNNGG 2 cut(s) 138, 366
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 111
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 168
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 3 cut(s) 256, 325, 384
BspANI GGCC 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 138, 366
BssSI CACGAG 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 441
BstDSI CCRYGG 1 cut(s) 366
BstEII GGTNACC 1 cut(s) 251
BstMAI GTCTC 1 cut(s) 108
BstMWI GCNNNNNNNGC 2 cut(s) 377, 441
BstNI CCWGG 1 cut(s) 140
BstPAI GACNNNNGTC 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 109, 138
BstV2I GAAGAC 1 cut(s) 281
BsuRI GGCC 1 cut(s) 371
BtgI CCRYGG 1 cut(s) 366
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 351
CviAII CATG 2 cut(s) 367, 436
CviJI RGCY 7 cut(s) 69, 149, 166, 171, 224, 371, 457
CviKI_1 RGCY 7 cut(s) 69, 149, 166, 171, 224, 371, 457
CviQI GTAC 1 cut(s) 351
EaeI YGGCCR 1 cut(s) 369
Ecl136II GAGCTC 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 168
Eco53kI GAGCTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 264
Eco91I GGTNACC 1 cut(s) 251
EcoICRI GAGCTC 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 138
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 370, 439
FaiI YATR 6 cut(s) 56, 269, 320, 368, 374, 437
FatI CATG 2 cut(s) 366, 435
FriOI GRGCYC 1 cut(s) 168
FspBI CTAG 3 cut(s) 6, 206, 344
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 111
HgaI GACGC 1 cut(s) 284
Hin1II CATG 2 cut(s) 370, 439
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 2 cut(s) 307, 398
HpaII CCGG 1 cut(s) 111
Hpy188I TCNGA 2 cut(s) 26, 221
Hpy188III TCNNGA 3 cut(s) 282, 395, 402
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 3 cut(s) 92, 230, 444
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 441
Hsp92II CATG 2 cut(s) 370, 439
LweI GCATC 1 cut(s) 217
MaeI CTAG 3 cut(s) 6, 206, 344
MaeIII GTNAC 3 cut(s) 182, 197, 251
MboII GAAGA 4 cut(s) 72, 166, 281, 434
MhlI GDGCHC 1 cut(s) 168
MlsI TGGCCA 1 cut(s) 371
MluCI AATT 3 cut(s) 32, 210, 406
MluNI TGGCCA 1 cut(s) 371
MlyI GAGTC 1 cut(s) 392
MnlI CCTC 2 cut(s) 6, 51
Mox20I TGGCCA 1 cut(s) 371
MscI TGGCCA 1 cut(s) 371
MseI TTAA 1 cut(s) 417
Msp20I TGGCCA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 2 cut(s) 111, 140
MvaI CCWGG 1 cut(s) 140
MwoI GCNNNNNNNGC 2 cut(s) 377, 441
NciI CCSGG 1 cut(s) 111
NcoI CCATGG 1 cut(s) 366
NlaIII CATG 2 cut(s) 370, 439
NmeAIII GCCGAG 1 cut(s) 147
NmuCI GTSAC 1 cut(s) 182
PfeI GAWTC 1 cut(s) 307
PleI GAGTC 1 cut(s) 392
PpsI GAGTC 1 cut(s) 392
PshAI GACNNNNGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 168
Psp6I CCWGG 1 cut(s) 138
PspEI GGTNACC 1 cut(s) 251
PspGI CCWGG 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 1 cut(s) 352
RsaNI GTAC 1 cut(s) 351
SacI GAGCTC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 417
SchI GAGTC 1 cut(s) 392
ScrFI CCNGG 2 cut(s) 111, 140
SduI GDGCHC 1 cut(s) 168
SetI ASST 6 cut(s) 71, 151, 168, 196, 240, 459
SfaNI GCATC 1 cut(s) 217
Sse9I AATT 3 cut(s) 32, 210, 406
SsiI CCGC 3 cut(s) 256, 325, 384
SspMI CTAG 3 cut(s) 6, 206, 344
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 109, 138
StyI CCWWGG 1 cut(s) 366
TaaI ACNGT 1 cut(s) 127
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 32, 210, 406
TatI WGTACW 1 cut(s) 350
TfiI GAWTC 1 cut(s) 307
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 2 cut(s) 43, 72
XapI RAATTY 2 cut(s) 210, 406
XspI CTAG 3 cut(s) 6, 206, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.