Rmu_sc0006543.1_g000001

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006543.1
OG0000509
Physical Location & Seq
Forward (+)
12337 .. 13794
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006543.1_g000001.1.cds

Sequence Viewer

Length: 921 bp
atgtctagcatgggcaagttgctagtaggacaggaaattgcagtcaaaaggctgtccaaaatttcccggcaaggattgagggagttcaaaaatgaagtctcagtaatttgcaagctccagcacaggaatttggttcggcttttggggtgctgcattgaagcagaagagagtatactaatttatgagtacatgcccaacaaaagtctggattgcttcatttttgattcaaccaaccgggcacttatggattggaggaggtgtattggcatcattgaagggattgctcaaggtcttctctatcttcataaatactcaagattaaggattattcaccgtgatttaaagaccagcaatatactgttggacagtgagatgaacccgaaaatttctgattttggcatggctagaatttttggggacgacgacagtaaaggaaaaacgaatcgggttgttggtacatttggttacatgtctcctgagtacgccatggacggcctgttttctgaaaaatcagatgtctttagctttggggtgatcatattagagatcataagttgcaagaagaacattgccttctttgagactgatcattctttgaacttacttggaaaagcttggtatttgtggaaagaaggcaatggcatggacttgattgcttctactctctgcgcttcttgttcaagcagtgaagttatgagatgcatacaaatgggtcttttgtgcgtccaagaaagagctatggatcgaccaaatatgtcagatgttgtttcaatgctaagcaatgaatcaattgctctgcctgttcctaaagaacctgcatttttgaatcagctaaattctgctaatgcagatatatcttcaagtaagcaaagatgtagatgtaacaatgatctaacagtttcctcagaacatgcaaggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr

Protein Analysis

306

Amino Acids

34.46

Weight (kDa)

7.48

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000509)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29542 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29543 FvH4_2g29544 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29545 FvH4_2g29560
malus_domestica MD15G1121300.v1.1
prunus_persica Prupe.1G473900_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474000_v2.0.a1 Prupe.1G474100_v2.0.a1 Prupe.1G474300_v2.0.a1 Prupe.1G474500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0298411 RchiOBHm_Chr6g0298421 RchiOBHm_Chr6g0298431 RchiOBHm_Chr6g0298441 RchiOBHm_Chr6g0298451 RchiOBHm_Chr6g0298461 RchiOBHm_Chr6g0298471 RchiOBHm_Chr6g0298481 RchiOBHm_Chr6g0298491 RchiOBHm_Chr6g0298501 RchiOBHm_Chr6g0298521
rosa_laevigata RLG00000011506 RLG00000011508 RLG00000011509 RLG00000011511 RLG00000011513 RLG00000011514 RLG00000011515
rosa_multiflora Rmu_co8314937.1_g000001 Rmu_co8319199.1_g000001 Rmu_sc0004500.1_g000002 Rmu_sc0006543.1_g000001 Rmu_ssc0000289.1_g000039 Rmu_ssc0000289.1_g000040 Rmu_ssc0000289.1_g000047 Rmu_ssc0000289.1_g000048 Rmu_ssc0000289.1_g000049 Rmu_ssc0000289.1_g000051
rosa_roxburghii Rroxscaffold_7G00169570 Rroxscaffold_7G00169580 Rroxscaffold_7G00169600 Rroxscaffold_7G00169610 Rroxscaffold_7G00169620 Rroxscaffold_7G00169630 Rroxscaffold_7G00169650 Rroxscaffold_7G00169660 Rroxscaffold_7G00169670
rosa_rugosa Rorug06G0280700 Rorug06G0280800 Rorug06G0280900
rosa_samantha Rh6AG391700 Rh6AG391800 Rh6AG392000 Rh6AG392100 Rh6AG392200 Rh6BG399300 Rh6BG399400 Rh6BG399500 Rh6BG399700 Rh6BG400000 Rh6CG405400 Rh6CG405500 Rh6CG405600 Rh6CG405700 Rh6CG405800 Rh6DG391800 Rh6DG391900 Rh6DG392000 Rh6DG392100 Rh6DG392300
rosa_wichuraiana Rw6G034230 Rw6G034240 Rw6G034250 Rw6G034260 Rw6G034270 Rw6G034280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 823
AccI GTMKAC 1 cut(s) 172
AclWI GGATC 1 cut(s) 750
AcsI RAATTY 5 cut(s) 60, 127, 384, 408, 835
AfaI GTAC 3 cut(s) 188, 457, 482
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 9 cut(s) 88, 158, 228, 275, 598, 681, 771, 826, 861
AluBI AGCT 5 cut(s) 115, 525, 614, 737, 832
AluI AGCT 5 cut(s) 115, 525, 614, 737, 832
Alw26I GTCTC 3 cut(s) 103, 477, 575
AlwI GGATC 1 cut(s) 750
AoxI GGCC 1 cut(s) 493
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 5 cut(s) 60, 127, 384, 408, 835
ArsI GACNNNNNNTTYG 2 cut(s) 81, 113
AspLEI GCGC 1 cut(s) 671
AsuC2I CCSGG 2 cut(s) 67, 236
AsuHPI GGTGA 2 cut(s) 323, 544
BaeGI GKGCMC 1 cut(s) 241
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 508
BclI TGATCA 2 cut(s) 534, 586
BcnI CCSGG 2 cut(s) 67, 236
BcoDI GTCTC 3 cut(s) 103, 477, 575
BfaI CTAG 3 cut(s) 6, 23, 405
BfuAI ACCTGC 1 cut(s) 823
BisI GCNGC 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 776
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 2 cut(s) 67, 236
BmrFI CCNGG 2 cut(s) 67, 236
BmsI GCATC 2 cut(s) 276, 689
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 101
Bpu1102I GCTNAGC 1 cut(s) 776
BpuEI CTTGAG 2 cut(s) 270, 298
BpuMI CCSGG 2 cut(s) 67, 236
BsaJI CCNNGG 1 cut(s) 486
BsaXI ACNNNNNCTCC 2 cut(s) 244, 274
Bse3DI GCAATG 3 cut(s) 567, 643, 787
BseDI CCNNGG 1 cut(s) 486
BseMI GCAATG 3 cut(s) 567, 643, 787
BseMII CTCAG 3 cut(s) 114, 468, 918
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 241
BseXI GCAGC 1 cut(s) 137
BshFI GGCC 1 cut(s) 495
BsiSI CCGG 2 cut(s) 67, 235
BslFI GGGAC 1 cut(s) 431
BsmAI GTCTC 3 cut(s) 103, 477, 575
BsmFI GGGAC 1 cut(s) 431
BsnI GGCC 1 cut(s) 495
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 5 cut(s) 534, 546, 586, 742, 889
Bsp1720I GCTNAGC 1 cut(s) 776
Bsp19I CCATGG 1 cut(s) 486
BspANI GGCC 1 cut(s) 495
BspCNI CTCAG 3 cut(s) 113, 469, 917
BspMI ACCTGC 1 cut(s) 823
BspPI GGATC 1 cut(s) 750
BsrDI GCAATG 3 cut(s) 567, 643, 787
BssECI CCNNGG 1 cut(s) 486
BssMI GATC 5 cut(s) 534, 546, 586, 742, 889
BssNAI GTATAC 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 486
Bst1107I GTATAC 1 cut(s) 173
Bst4CI ACNGT 5 cut(s) 335, 360, 368, 428, 898
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 100, 477, 776, 904
BstDSI CCRYGG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 5 cut(s) 537, 549, 589, 745, 892
BstMAI GTCTC 3 cut(s) 103, 477, 575
BstMBI GATC 5 cut(s) 534, 546, 586, 742, 889
BstNSI RCATGY 3 cut(s) 193, 472, 914
BstSCI CCNGG 2 cut(s) 65, 234
BstSLI GKGCMC 1 cut(s) 241
BstV1I GCAGC 1 cut(s) 137
BstV2I GAAGAC 1 cut(s) 284
BstZ17I GTATAC 1 cut(s) 173
BsuRI GGCC 1 cut(s) 495
BtgI CCRYGG 1 cut(s) 486
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 2 cut(s) 373, 691
BveI ACCTGC 1 cut(s) 823
Cac8I GCNNGC 1 cut(s) 113
CfoI GCGC 1 cut(s) 671
CseI GACGC 1 cut(s) 712
Csp6I GTAC 3 cut(s) 187, 456, 481
CviAII CATG 7 cut(s) 10, 190, 400, 469, 487, 643, 911
CviJI RGCY 9 cut(s) 52, 115, 139, 404, 495, 525, 614, 737, 832
CviKI_1 RGCY 9 cut(s) 52, 115, 139, 404, 495, 525, 614, 737, 832
CviQI GTAC 3 cut(s) 187, 456, 481
DdeI CTNAG 4 cut(s) 100, 477, 776, 904
DpnI GATC 5 cut(s) 536, 548, 588, 744, 891
DpnII GATC 5 cut(s) 534, 546, 586, 742, 889
DraI TTTAAA 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 486
EcoT14I CCWWGG 1 cut(s) 486
EcoT22I ATGCAT 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 486
FaeI CATG 7 cut(s) 13, 193, 403, 472, 490, 646, 914
FaqI GGGAC 1 cut(s) 431
FatI CATG 7 cut(s) 9, 189, 399, 468, 486, 642, 910
FbaI TGATCA 2 cut(s) 534, 586
FblI GTMKAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 3 cut(s) 6, 23, 405
GlaI GCGC 1 cut(s) 670
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 1 cut(s) 495
HapII CCGG 2 cut(s) 67, 235
HgaI GACGC 1 cut(s) 712
HhaI GCGC 1 cut(s) 671
Hin1II CATG 7 cut(s) 13, 193, 403, 472, 490, 646, 914
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HindIII AAGCTT 1 cut(s) 612
HinfI GANTC 4 cut(s) 224, 442, 785, 826
HpaII CCGG 2 cut(s) 67, 235
HphI GGTGA 2 cut(s) 323, 544
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 5 cut(s) 391, 505, 514, 760, 907
Hpy188III TCNNGA 3 cut(s) 206, 315, 476
Hpy8I GTNNAC 1 cut(s) 173
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 3 cut(s) 269, 583, 626
HpyCH4III ACNGT 5 cut(s) 335, 360, 368, 428, 898
HpyCH4V TGCA 8 cut(s) 41, 111, 153, 558, 702, 818, 848, 914
HpyF3I CTNAG 4 cut(s) 100, 477, 776, 904
Hsp92II CATG 7 cut(s) 13, 193, 403, 472, 490, 646, 914
HspAI GCGC 1 cut(s) 669
Ksp22I TGATCA 2 cut(s) 534, 586
Kzo9I GATC 5 cut(s) 534, 546, 586, 742, 889
LmnI GCTCC 1 cut(s) 120
Lsp1109I GCAGC 1 cut(s) 137
LweI GCATC 2 cut(s) 276, 689
MaeI CTAG 3 cut(s) 6, 23, 405
MaeIII GTNAC 2 cut(s) 464, 881
MalI GATC 5 cut(s) 536, 548, 588, 744, 891
MboI GATC 5 cut(s) 534, 546, 586, 742, 889
MboII GAAGA 5 cut(s) 176, 284, 293, 574, 849
MfeI CAATTG 1 cut(s) 789
MhlI GDGCHC 1 cut(s) 241
MluCI AATT 9 cut(s) 36, 60, 105, 127, 177, 384, 408, 789, 835
MmeI TCCRAC 1 cut(s) 342
MnlI CCTC 4 cut(s) 72, 246, 249, 913
Mph1103I ATGCAT 1 cut(s) 704
MseI TTAA 2 cut(s) 320, 341
MslI CAYNNNNRTG 1 cut(s) 707
MspI CCGG 2 cut(s) 67, 235
MspR9I CCNGG 2 cut(s) 67, 236
MunI CAATTG 1 cut(s) 789
NciI CCSGG 2 cut(s) 67, 236
NcoI CCATGG 1 cut(s) 486
NdeII GATC 5 cut(s) 534, 546, 586, 742, 889
NlaIII CATG 7 cut(s) 13, 193, 403, 472, 490, 646, 914
NsiI ATGCAT 1 cut(s) 704
NspI RCATGY 3 cut(s) 193, 472, 914
PciI ACATGT 1 cut(s) 468
PfeI GAWTC 4 cut(s) 224, 442, 785, 826
PkrI GCNGC 1 cut(s) 152
PscI ACATGT 1 cut(s) 468
RsaI GTAC 3 cut(s) 188, 457, 482
RsaNI GTAC 3 cut(s) 187, 456, 481
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 2 cut(s) 320, 341
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 5 cut(s) 534, 546, 586, 742, 889
ScrFI CCNGG 2 cut(s) 67, 236
SduI GDGCHC 1 cut(s) 241
SetI ASST 9 cut(s) 117, 260, 292, 527, 616, 739, 817, 834, 920
SfaNI GCATC 2 cut(s) 276, 689
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 2 cut(s) 285, 313
SmoI CTYRAG 2 cut(s) 285, 313
Sse9I AATT 9 cut(s) 36, 60, 105, 127, 177, 384, 408, 789, 835
SspMI CTAG 3 cut(s) 6, 23, 405
StyD4I CCNGG 2 cut(s) 65, 234
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 5 cut(s) 335, 360, 368, 428, 898
TaqI TCGA 1 cut(s) 745
TasI AATT 9 cut(s) 36, 60, 105, 127, 177, 384, 408, 789, 835
TatI WGTACW 1 cut(s) 186
TfiI GAWTC 4 cut(s) 224, 442, 785, 826
Tru1I TTAA 2 cut(s) 320, 341
Tru9I TTAA 2 cut(s) 320, 341
TscAI CASTG 2 cut(s) 373, 691
TseI GCWGC 1 cut(s) 150
TspDTI ATGAA 5 cut(s) 108, 205, 293, 389, 798
TspRI CASTG 2 cut(s) 373, 691
XapI RAATTY 5 cut(s) 60, 127, 384, 408, 835
XceI RCATGY 3 cut(s) 193, 472, 914
XcmI CCANNNNNNNNNTGG 1 cut(s) 202
XmiI GTMKAC 1 cut(s) 172
XspI CTAG 3 cut(s) 6, 23, 405
Zsp2I ATGCAT 1 cut(s) 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.