Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Reverse (-)

14770096 .. 14771301

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGAGAAGAGATTTTGTCATCAAGACAGACGCTCAGACCAATGTTGTTGGTCTGATCTTCCAATCGATCAGCTAAGAGAAGTGGCCGATCGTCTCTCATATCTTGATTTTCTGCGCTTCGGTGTTGTATGCAAACAATGGCGGCGAGCTTCTCTCGACGACGGCAACAATAAGATTCAACATCGACGTGCAATGTTTCTGCTACGTATAGCCAAGCCAACACAACATTACTACCATGATAGACCCGAACTCAAAACTACTTATCTATCAACGTTCGTTGATTTGTTATCGAAACGACGTTTGGGTTTTTACAACTCGGTATGGGAAGAACGAAGACAGTACAAGCACCCACCTGCCAGGTTTTGTTGTTCATATTCAGATTGGTTGCTGTTTCTTATTAAATCAGATACAGGTCGATCAGATAGGATATTCCTTATTCTTGATGTTTTTGGCGAGGACACACTGCAAGTAAACCTGCTTCCCCCTTTAGACTGTAACTGTGGACATTGGAAGGTAGAGCTAGCCTCATTCTCGACCGCTCCGGCTTCTCCTGGTTCTGTTATCCTCTTCCTATGGAAAAGTACTGCACCTCGTAGTTGTTATGAGGAAGGGGAAGGGGAAGAATATCACTATTTCCCTATAACTACAGACGACCTAGAATATAGAAGATGGAGTTTGTATCAACTTCCTTGTGTAAACCCTAATGATTATGACTTCAAGGAAGTGGCTTATGCAGATGGAAGTTTCTATGTTGCCATTGATATGAATTCAAAGGTTGTATTGGGCAGCTTCAATGTGGCACTTCAAGAGTGGGTTATGATGAACAATTCCACCTCCACCCTGAGACTACCATCTCGTCCAACACACCTTTACTTGGCTAACTCTGATCGGAAGTTCCTACTGGCAGTGTTTTATAATAAGGATCAGCAAGGTAGAGAATTTTTCTCTCCATCAGAAAAAAGAGGTAGAGAACTTTTCTGTCATATATATCAGTTTGATTTGTCACAGAGAAATTGGATTAGAGTTAAGAATTTGGGAAACCGAGTACTGCTTTTGTGTACCGCATCATCTATTGCAGTTTCAGCAGCGAGCACGGTGGCTAGTAAATTTGCAAACATGATAGTTCGTTATAGTAGCTGCGACTTCGTCTTGGAGAAGTATACTTGCAACAGTGTAGGCGAATGGGGATTTGCAGAAAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

402

Amino Acids

46.83

Weight (kDa)

8.3

Isoelectric Point (pI)

52.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	17 - 55	7.3e-07	F-box domain
Beta-prop_KIB1-4	PF03478	119 - 364	8.5e-17	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	915
AarI	CACCTGC	1 cut(s)	361
Acc36I	ACCTGC	2 cut(s)	361, 483
AccBSI	CCGCTC	1 cut(s)	539
AccI	GTMKAC	1 cut(s)	1160
AciI	CCGC	3 cut(s)	142, 537, 1062
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	1 cut(s)	930
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	4 cut(s)	766, 938, 1030, 1106
AfaI	GTAC	4 cut(s)	341, 583, 1047, 1060
AfiI	CCNNNNNNNGG	1 cut(s)	874
AgsI	TTSAA	5 cut(s)	179, 718, 771, 793, 806
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	2 cut(s)	356, 550
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AluBI	AGCT	5 cut(s)	73, 149, 520, 789, 1137
AluI	AGCT	5 cut(s)	73, 149, 520, 789, 1137
Alw21I	GWGCWC	1 cut(s)	1094
Alw26I	GTCTC	2 cut(s)	98, 838
AlwI	GGATC	1 cut(s)	930
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	3 cut(s)	786, 1085, 1137
ApoI	RAATTY	4 cut(s)	766, 938, 1030, 1106
AspLEI	GCGC	1 cut(s)	117
AsuNHI	GCTAGC	1 cut(s)	520
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	1 cut(s)	1094
BbvI	GCAGC	3 cut(s)	798, 1097, 1124
BccI	CCATC	4 cut(s)	663, 731, 859, 958
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	2 cut(s)	358, 552
BcoDI	GTCTC	2 cut(s)	98, 838
BfaI	CTAG	3 cut(s)	521, 656, 1101
BfmI	CTRYAG	1 cut(s)	645
BfuAI	ACCTGC	2 cut(s)	361, 483
BisI	GCNGC	4 cut(s)	143, 787, 1086, 1138
BlsI	GCNGC	4 cut(s)	144, 788, 1087, 1139
BmcAI	AGTACT	2 cut(s)	583, 1047
Bme1390I	CCNGG	2 cut(s)	358, 552
BmgBI	CACGTC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	358, 552
BmsI	GCATC	1 cut(s)	1073
BmtI	GCTAGC	1 cut(s)	524
BpiI	GAAGAC	1 cut(s)	340
BplI	GAGNNNNNCTC	4 cut(s)	138, 170, 509, 541
Bsa29I	ATCGAT	1 cut(s)	66
BsaAI	YACGTR	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	874
Bse1I	ACTGG	1 cut(s)	906
Bse3DI	GCAATG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	358, 552
BseCI	ATCGAT	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	874
BseMI	GCAATG	1 cut(s)	198
BseMII	CTCAG	2 cut(s)	48, 833
BseNI	ACTGG	1 cut(s)	906
BseXI	GCAGC	3 cut(s)	798, 1097, 1124
BsgI	GTGCAG	1 cut(s)	570
Bsh1285I	CGRYCG	2 cut(s)	91, 537
BshFI	GGCC	1 cut(s)	86
BshVI	ATCGAT	1 cut(s)	66
BsiEI	CGRYCG	2 cut(s)	91, 537
BsiHKAI	GWGCWC	1 cut(s)	1094
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	1 cut(s)	874
BsmAI	GTCTC	2 cut(s)	98, 838
BsmBI	CGTCTC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	1094
Bsp143I	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
BspACI	CCGC	3 cut(s)	142, 537, 1062
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	2 cut(s)	47, 834
BspDI	ATCGAT	1 cut(s)	66
BspMI	ACCTGC	2 cut(s)	361, 483
BspOI	GCTAGC	1 cut(s)	524
BspPI	GGATC	1 cut(s)	930
BsrBI	CCGCTC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	906
BssMI	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
BssNAI	GTATAC	1 cut(s)	1161
Bst1107I	GTATAC	1 cut(s)	1161
Bst2UI	CCWGG	2 cut(s)	358, 552
Bst4CI	ACNGT	5 cut(s)	339, 494, 500, 1096, 1172
Bst6I	CTCTTC	2 cut(s)	2, 572
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	3 cut(s)	147, 522, 1090
BstDEI	CTNAG	3 cut(s)	34, 74, 842
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	6 cut(s)	58, 70, 91, 419, 889, 925
BstMAI	GTCTC	2 cut(s)	98, 838
BstMBI	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
BstMCI	CGRYCG	2 cut(s)	91, 537
BstMWI	GCNNNNNNNGC	1 cut(s)	1082
BstNI	CCWGG	2 cut(s)	358, 552
BstSCI	CCNGG	2 cut(s)	356, 550
BstSFI	CTRYAG	1 cut(s)	645
BstSNI	TACGTA	1 cut(s)	206
BstV1I	GCAGC	3 cut(s)	798, 1097, 1124
BstV2I	GAAGAC	1 cut(s)	340
BstZ17I	GTATAC	1 cut(s)	1161
Bsu15I	ATCGAT	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	86
BsuTUI	ATCGAT	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	188
BtsI	GCAGTG	2 cut(s)	461, 912
BtsIMutI	CAGTG	3 cut(s)	461, 912, 1177
BveI	ACCTGC	2 cut(s)	361, 483
Cac8I	GCNNGC	3 cut(s)	147, 522, 1090
CfoI	GCGC	1 cut(s)	117
ClaI	ATCGAT	1 cut(s)	66
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	4 cut(s)	340, 582, 1046, 1059
CviAII	CATG	2 cut(s)	236, 1117
CviQI	GTAC	4 cut(s)	340, 582, 1046, 1059
DdeI	CTNAG	3 cut(s)	34, 74, 842
DpnI	GATC	6 cut(s)	57, 69, 90, 418, 888, 924
DpnII	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	2, 572
EarI	CTCTTC	2 cut(s)	2, 572
Eco105I	TACGTA	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	2 cut(s)	356, 550
Esp3I	CGTCTC	1 cut(s)	98
FaeI	CATG	2 cut(s)	239, 1120
FatI	CATG	2 cut(s)	235, 1116
FblI	GTMKAC	1 cut(s)	1160
Fnu4HI	GCNGC	4 cut(s)	143, 787, 1086, 1138
Fsp4HI	GCNGC	4 cut(s)	143, 787, 1086, 1138
FspBI	CTAG	3 cut(s)	521, 656, 1101
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	143, 787, 1086, 1138
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	1 cut(s)	39
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	2 cut(s)	239, 1120
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	175
HpaII	CCGG	1 cut(s)	542
Hpy166II	GTNNAC	5 cut(s)	472, 503, 697, 1059, 1161
Hpy188I	TCNGA	8 cut(s)	37, 55, 379, 406, 421, 886, 891, 955
Hpy188III	TCNNGA	6 cut(s)	23, 104, 155, 440, 532, 806
Hpy8I	GTNNAC	5 cut(s)	472, 503, 697, 1059, 1161
Hpy99I	CGWCG	4 cut(s)	161, 164, 189, 300
HpyAV	CCTTC	3 cut(s)	505, 602, 608
HpyCH4III	ACNGT	5 cut(s)	339, 494, 500, 1096, 1172
HpyCH4IV	ACGT	4 cut(s)	187, 205, 272, 298
HpyCH4V	TGCA	9 cut(s)	132, 191, 466, 587, 734, 1076, 1112, 1167, 1193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1082
HpyF3I	CTNAG	3 cut(s)	34, 74, 842
HpySE526I	ACGT	4 cut(s)	187, 205, 272, 298
Hsp92II	CATG	2 cut(s)	239, 1120
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
LmnI	GCTCC	1 cut(s)	544
Lsp1109I	GCAGC	3 cut(s)	798, 1097, 1124
LweI	GCATC	1 cut(s)	1073
MaeI	CTAG	3 cut(s)	521, 656, 1101
MaeII	ACGT	4 cut(s)	187, 205, 272, 298
MaeIII	GTNAC	2 cut(s)	494, 1002
MalI	GATC	6 cut(s)	57, 69, 90, 418, 888, 924
MbiI	CCGCTC	1 cut(s)	539
MboI	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
MboII	GAAGA	7 cut(s)	19, 50, 338, 345, 559, 632, 678
MhlI	GDGCHC	1 cut(s)	1094
MluCI	AATT	6 cut(s)	766, 826, 938, 1012, 1030, 1106
MmeI	TCCRAC	1 cut(s)	884
MnlI	CCTC	7 cut(s)	448, 535, 575, 598, 600, 844, 956
MseI	TTAA	2 cut(s)	399, 1026
MslI	CAYNNNNRTG	2 cut(s)	186, 761
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	2 cut(s)	358, 552
MvaI	CCWGG	2 cut(s)	358, 552
MwoI	GCNNNNNNNGC	1 cut(s)	1082
NdeII	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
NheI	GCTAGC	1 cut(s)	520
NlaIII	CATG	2 cut(s)	239, 1120
NmuCI	GTSAC	1 cut(s)	1002
PaqCI	CACCTGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	175
PflFI	GACNNNGTC	1 cut(s)	1145
PkrI	GCNGC	4 cut(s)	144, 788, 1087, 1139
Ple19I	CGATCG	1 cut(s)	91
Ppu21I	YACGTR	1 cut(s)	206
PsiI	TTATAA	1 cut(s)	915
Psp1406I	AACGTT	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	356, 550
PspGI	CCWGG	2 cut(s)	356, 550
PsyI	GACNNNGTC	1 cut(s)	1145
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	4 cut(s)	341, 583, 1047, 1060
RsaNI	GTAC	4 cut(s)	340, 582, 1046, 1059
RseI	CAYNNNNRTG	2 cut(s)	186, 761
SaqAI	TTAA	2 cut(s)	399, 1026
SatI	GCNGC	4 cut(s)	143, 787, 1086, 1138
Sau3AI	GATC	6 cut(s)	55, 67, 88, 416, 886, 922
ScaI	AGTACT	2 cut(s)	583, 1047
ScrFI	CCNGG	2 cut(s)	358, 552
SduI	GDGCHC	1 cut(s)	1094
SfaNI	GCATC	1 cut(s)	1073
SfcI	CTRYAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	186, 761
SnaBI	TACGTA	1 cut(s)	206
Sse9I	AATT	6 cut(s)	766, 826, 938, 1012, 1030, 1106
SsiI	CCGC	3 cut(s)	142, 537, 1062
SspMI	CTAG	3 cut(s)	521, 656, 1101
StyD4I	CCNGG	2 cut(s)	356, 550
TaaI	ACNGT	5 cut(s)	339, 494, 500, 1096, 1172
TaiI	ACGT	4 cut(s)	190, 208, 275, 301
TaqI	TCGA	6 cut(s)	66, 156, 184, 290, 415, 533
TasI	AATT	6 cut(s)	766, 826, 938, 1012, 1030, 1106
TatI	WGTACW	3 cut(s)	339, 581, 1045
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	2 cut(s)	399, 1026
Tru9I	TTAA	2 cut(s)	399, 1026
TscAI	CASTG	3 cut(s)	468, 912, 1177
TseFI	GTSAC	1 cut(s)	1002
TseI	GCWGC	3 cut(s)	786, 1085, 1137
Tsp45I	GTSAC	1 cut(s)	1002
TspDTI	ATGAA	3 cut(s)	360, 779, 836
TspRI	CASTG	3 cut(s)	468, 912, 1177
Tth111I	GACNNNGTC	1 cut(s)	1145
XapI	RAATTY	4 cut(s)	766, 938, 1030, 1106
XmiI	GTMKAC	1 cut(s)	1160
XspI	CTAG	3 cut(s)	521, 656, 1101
ZrmI	AGTACT	2 cut(s)	583, 1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.