Rh7BG098700

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000673
Physical Location & Seq
Forward (+)
7275735 .. 7291828
16094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG098700.1

Sequence Viewer

Length: 654 bp
ATGGAACTACCCTCTTTGAACATGGACATGTTTGATAATGACGAAGATGTTAAGGTAGCAGCTATCTTTTCGACTAGTCCAACTTGTCATGACTGTGTAATCTTTGTGATCCTCTATAGAAGTACCGATGGTCGATGTTCTACAAGCAAACATTGCTTTATAAGCACCTGTAAACTCAGTGATAAAAGATGGATTACTCGAGAGTATCCTCGGCCTCAAGATCATGAAATTGGGGGCTTAGCTTATGTGGATGGAGTTGTCCACTGTGTTTTTTACCTGGGATCCTCGTCAATAACATTTGCTACCTTCCATGTAGCCCTTAAAGACTGGGTTATGATAGACTATTCCCCCTTTTCAAAACTACGTGTTTTCTTTCCATGGAAGTGTTACTTGGTTGAGTCTGGTAGGGAGCTCTTATTTGCATTTTACGGTCTGGACAACTCTTTTGATAAGGATAAAGAGATTCTTTACTGGCATATCTACCAATTTGATCGCTCAAGGAAAGATTGGACTAGAGTTTTAACGTTAGGGAACCGAGCATTACTCATATATGGCGTATCATCCTCCATTATCATGAGTGTGGCAGAGGGGAAAACTAGGGAAATTGCAGACAAGGTTCTGTTTGAGAAACTCTGCAGGAGCTCAGATGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

217

Amino Acids

25.1

Weight (kDa)

6.3

Isoelectric Point (pI)

45.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 2 - 195 5.4e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 161
AclI AACGTT 1 cut(s) 524
AclWI GGATC 3 cut(s) 103, 276, 289
AfaI GTAC 1 cut(s) 124
AflIII ACRYGT 2 cut(s) 27, 364
AgsI TTSAA 2 cut(s) 19, 357
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 4 cut(s) 62, 242, 412, 642
AluI AGCT 4 cut(s) 62, 242, 412, 642
Alw21I GWGCWC 2 cut(s) 414, 644
AlwI GGATC 3 cut(s) 103, 276, 289
Ama87I CYCGRG 1 cut(s) 198
AoxI GGCC 1 cut(s) 212
ApeKI GCWGC 1 cut(s) 59
ArsI GACNNNNNNTTYG 2 cut(s) 428, 460
AvaI CYCGRG 1 cut(s) 198
BamHI GGATCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 414, 644
Bbv12I GWGCWC 2 cut(s) 414, 644
BbvI GCAGC 1 cut(s) 71
BccI CCATC 3 cut(s) 122, 183, 245
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 216
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 3 cut(s) 75, 513, 597
BfmI CTRYAG 2 cut(s) 115, 634
BfuI GTATCC 1 cut(s) 216
BisI GCNGC 1 cut(s) 60
BlpI GCTNAGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 278
BmeT110I CYCGRG 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 283, 533
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 337
BmuI ACTGGG 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 528, 560
Bpu1102I GCTNAGC 1 cut(s) 238
BpuEI CTTGAG 2 cut(s) 201, 481
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 3 cut(s) 209, 277, 377
Bse1I ACTGG 2 cut(s) 332, 476
Bse3DI GCAATG 1 cut(s) 151
BseBI CCWGG 1 cut(s) 278
BseDI CCNNGG 3 cut(s) 209, 277, 377
BseGI GGATG 2 cut(s) 256, 560
BseMI GCAATG 1 cut(s) 151
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 2 cut(s) 332, 476
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 214
BsiHKAI GWGCWC 2 cut(s) 414, 644
BsiHKCI CYCGRG 1 cut(s) 198
BsnI GGCC 1 cut(s) 214
BsoBI CYCGRG 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 414, 644
Bsp143I GATC 4 cut(s) 108, 220, 281, 490
Bsp1720I GCTNAGC 1 cut(s) 238
Bsp19I CCATGG 1 cut(s) 377
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 189
BspHI TCATGA 3 cut(s) 88, 223, 573
BspLI GGNNCC 2 cut(s) 283, 533
BspMAI CTGCAG 1 cut(s) 638
BspPI GGATC 3 cut(s) 103, 276, 289
BsrDI GCAATG 1 cut(s) 151
BsrI ACTGG 2 cut(s) 332, 476
BssECI CCNNGG 3 cut(s) 209, 277, 377
BssMI GATC 4 cut(s) 108, 220, 281, 490
BssT1I CCWWGG 1 cut(s) 377
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 95, 266, 431
BstAPI GCANNNNNTGC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 176, 238, 643
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 256, 560
BstKTI GATC 4 cut(s) 111, 223, 284, 493
BstMBI GATC 4 cut(s) 108, 220, 281, 490
BstMWI GCNNNNNNNGC 2 cut(s) 153, 162
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 2 cut(s) 115, 634
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuI GTATCC 1 cut(s) 216
BsuRI GGCC 1 cut(s) 214
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 256, 560
BtsIMutI CAGTG 2 cut(s) 184, 262
CciI TCATGA 3 cut(s) 88, 223, 573
Csp6I GTAC 1 cut(s) 123
CviAII CATG 7 cut(s) 22, 28, 89, 224, 311, 378, 574
CviJI RGCY 7 cut(s) 62, 214, 237, 242, 317, 412, 642
CviKI_1 RGCY 7 cut(s) 62, 214, 237, 242, 317, 412, 642
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 3 cut(s) 176, 238, 643
DpnI GATC 4 cut(s) 110, 222, 283, 492
DpnII GATC 4 cut(s) 108, 220, 281, 490
Ecl136II GAGCTC 2 cut(s) 412, 642
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 2 cut(s) 414, 644
Eco53kI GAGCTC 2 cut(s) 412, 642
Eco88I CYCGRG 1 cut(s) 198
EcoICRI GAGCTC 2 cut(s) 412, 642
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 2 cut(s) 414, 644
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 7 cut(s) 25, 31, 92, 227, 314, 381, 577
FalI AAGNNNNNCTT 4 cut(s) 374, 406, 450, 482
FatI CATG 7 cut(s) 21, 27, 88, 223, 310, 377, 573
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 263, 547
FriOI GRGCYC 2 cut(s) 414, 644
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 3 cut(s) 75, 513, 597
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 214
Hin1II CATG 7 cut(s) 25, 31, 92, 227, 314, 381, 577
HinfI GANTC 2 cut(s) 398, 463
Hpy166II GTNNAC 2 cut(s) 173, 262
Hpy188I TCNGA 1 cut(s) 646
Hpy188III TCNNGA 6 cut(s) 89, 200, 218, 224, 434, 574
Hpy8I GTNNAC 2 cut(s) 173, 262
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 3 cut(s) 95, 266, 431
HpyCH4IV ACGT 2 cut(s) 364, 524
HpyCH4V TGCA 3 cut(s) 422, 608, 636
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 162
HpyF3I CTNAG 3 cut(s) 176, 238, 643
HpySE526I ACGT 2 cut(s) 364, 524
Hsp92II CATG 7 cut(s) 25, 31, 92, 227, 314, 381, 577
Kzo9I GATC 4 cut(s) 108, 220, 281, 490
LmnI GCTCC 2 cut(s) 409, 639
LpnPI CCDG 8 cut(s) 181, 263, 290, 313, 387, 419, 457, 622
Lsp1109I GCAGC 1 cut(s) 71
MaeI CTAG 3 cut(s) 75, 513, 597
MaeII ACGT 2 cut(s) 364, 524
MaeIII GTNAC 1 cut(s) 386
MalI GATC 4 cut(s) 110, 222, 283, 492
MboI GATC 4 cut(s) 108, 220, 281, 490
MboII GAAGA 1 cut(s) 56
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 2 cut(s) 414, 644
MluCI AATT 3 cut(s) 228, 485, 603
MlyI GAGTC 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 104
MnlI CCTC 7 cut(s) 22, 122, 219, 225, 295, 574, 580
MseI TTAA 3 cut(s) 51, 321, 521
MslI CAYNNNNRTG 5 cut(s) 26, 93, 382, 572, 578
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 153, 162
NcoI CCATGG 1 cut(s) 377
NdeII GATC 4 cut(s) 108, 220, 281, 490
NlaIII CATG 7 cut(s) 25, 31, 92, 227, 314, 381, 577
NlaIV GGNNCC 2 cut(s) 283, 533
NmeAIII GCCGAG 1 cut(s) 190
NspI RCATGY 1 cut(s) 31
PaeR7I CTCGAG 1 cut(s) 198
PagI TCATGA 3 cut(s) 88, 223, 573
PciI ACATGT 1 cut(s) 27
PfeI GAWTC 1 cut(s) 463
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 365
PscI ACATGT 1 cut(s) 27
PsiI TTATAA 1 cut(s) 161
Psp124BI GAGCTC 2 cut(s) 414, 644
Psp1406I AACGTT 1 cut(s) 524
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 283, 533
PstI CTGCAG 1 cut(s) 638
PsuI RGATCY 1 cut(s) 281
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
RseI CAYNNNNRTG 5 cut(s) 26, 93, 382, 572, 578
SacI GAGCTC 2 cut(s) 414, 644
SaqAI TTAA 3 cut(s) 51, 321, 521
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 4 cut(s) 108, 220, 281, 490
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 2 cut(s) 414, 644
SfcI CTRYAG 2 cut(s) 115, 634
Sfr274I CTCGAG 1 cut(s) 198
SlaI CTCGAG 1 cut(s) 198
SmiMI CAYNNNNRTG 5 cut(s) 26, 93, 382, 572, 578
SmlI CTYRAG 3 cut(s) 198, 216, 496
SmoI CTYRAG 3 cut(s) 198, 216, 496
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 3 cut(s) 228, 485, 603
SspMI CTAG 3 cut(s) 75, 513, 597
SstI GAGCTC 2 cut(s) 414, 644
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 3 cut(s) 95, 266, 431
TaiI ACGT 2 cut(s) 367, 527
TaqI TCGA 3 cut(s) 71, 133, 199
TasI AATT 3 cut(s) 228, 485, 603
TfiI GAWTC 1 cut(s) 463
Tru1I TTAA 3 cut(s) 51, 321, 521
Tru9I TTAA 3 cut(s) 51, 321, 521
TscAI CASTG 2 cut(s) 184, 269
TseI GCWGC 1 cut(s) 59
TspDTI ATGAA 1 cut(s) 240
TspRI CASTG 2 cut(s) 184, 269
XceI RCATGY 1 cut(s) 31
XhoI CTCGAG 1 cut(s) 198
XspI CTAG 3 cut(s) 75, 513, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.