Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

45831163 .. 45832371

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGTCAAACACTAATGATCGCTCGTGGTCCGATATGCCAATTGAAATCTCAACCTCAGTTGCTGAACGTCTTTCACCGACACCAATCACTGCTGATATCAATCTTTTTCACTTTGGTTCCGTCTGCAAAACTTGGAGACAAGCTAGCTTTGGTGCAGGAGTTCGACGTCGTTCAAGTATGCCATGGTTAATTAACGGCGAATACGCGTTGTTTTGCAATGGAAACTTACCAGCATTGAAGTGTCAGTTCTCCGATTTCTGGTGCAAACAAATTTTATACTCCTATGCAGAAGTCTTACCGAAAAAATTGGAGAGAGACCCCACTGCACATGCTTCAAAAAATGGCTGGTTGCTTTTGTCGACGGATGAGTGTATTAATCCTATTTTGGCTCGTACCTCATTCTTTTTTTTTAATCCTTTTCGTGAGAAGATGGCGATCATCGAGTTACCTGAAGATTTGAATTTTTCACTCTATTACGAAATAGTTGCATCAACGTTTACAACAAATCCAACTTGTCCCAATGATTGTCATATCTTTGTAGCATGTGGTAGATCATCTAACCCACGAAAAATTTGCAGCATATATACTTGTAATCTGCAGAACGGCGAATGGAAAGATCAGGATATAGACTGTGACATGGAACTATTTGATGTGGCATATATGGACGGAGCTTTCTATGGCGTTTTTTCAGACGGGATTTCGATAGTATTGCATGTCTTCACATTTAGAAGACGGAGCTTTCTATCGCGTCTTAAGAAAGCCATTGGACAAGCTGATGATGGTGAACAATGTGATCCATTCGTTATCTCCTCCTCCTCCTCTTCCTTAAGAAAGAAGGAGAATGATGATCTCTACTTAGTTGAGGCTGATGGGGATCTCTTATTAGCAATTTGTTCTATTGATGACACTCCCAGCTATTGTCACATATACCGGTTGGATCGGTCACGTAAAAAATGGAATCGAATTAGAAACTTGGGAAATCGAGTAATGATTTTGTCTAGCGATGGTGTTGGATCGATTGTAGTTCCTGCGGTGCGTGATGCTAAAGAATTTGCAAACACGATCTTTGTTTATCGAGACTCAAAGCATGAGCATTATATCTGCAAAAGTACTGAAGCCACTTGGATATTGGACAAAGTGCATCATTTAAATCCTCCTGAAGCAGGCAGTGCTCTCATTGAACCCCCTGACTTATGGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005739 GO:0006325 GO:0006338 GO:0006996 GO:0007029 GO:0008150 GO:0009987 GO:0010256 GO:0016043 GO:0031974 GO:0031981 GO:0032991 GO:0034728 GO:0043044 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043486 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0051276 GO:0070013 GO:0070603 GO:0071824 GO:0071840 GO:0097346 GO:1902494 GO:1904949

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295

Protein Analysis

401

Amino Acids

45.52

Weight (kDa)

5.84

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	105 - 360	6.6e-21	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AccI	GTMKAC	1 cut(s)	359
AccII	CGCG	2 cut(s)	206, 748
AciI	CCGC	1 cut(s)	1031
AclI	AACGTT	1 cut(s)	494
AclWI	GGATC	4 cut(s)	788, 882, 945, 1021
AcsI	RAATTY	4 cut(s)	270, 460, 570, 1049
AcuI	CTGAAG	3 cut(s)	471, 1134, 1179
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	2 cut(s)	394, 1111
AfiI	CCNNNNNNNGG	2 cut(s)	258, 1163
AflII	CTTAAG	2 cut(s)	752, 826
AflIII	ACRYGT	1 cut(s)	204
AgeI	ACCGGT	1 cut(s)	930
AgsI	TTSAA	6 cut(s)	44, 174, 238, 336, 460, 1181
AluBI	AGCT	6 cut(s)	143, 147, 671, 738, 773, 915
AluI	AGCT	6 cut(s)	143, 147, 671, 738, 773, 915
Alw21I	GWGCWC	1 cut(s)	1174
Alw26I	GTCTC	3 cut(s)	130, 309, 1071
AlwI	GGATC	4 cut(s)	788, 882, 945, 1021
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	576
ApoI	RAATTY	4 cut(s)	270, 460, 570, 1049
AseI	ATTAAT	1 cut(s)	375
AsiGI	ACCGGT	1 cut(s)	930
AspS9I	GGNCC	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	66, 794
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	27
BauI	CACGAG	1 cut(s)	22
BbsI	GAAGAC	2 cut(s)	709, 736
Bbv12I	GWGCWC	1 cut(s)	1174
BbvI	GCAGC	1 cut(s)	588
BccI	CCATC	4 cut(s)	424, 773, 863, 998
BceAI	ACGGC	2 cut(s)	211, 619
BcgI	CGANNNNNNTGC	6 cut(s)	467, 501, 555, 589, 691, 725
BcoDI	GTCTC	3 cut(s)	130, 309, 1071
BfaI	CTAG	2 cut(s)	144, 999
BfmI	CTRYAG	1 cut(s)	596
BfrI	CTTAAG	2 cut(s)	752, 826
BisI	GCNGC	1 cut(s)	577
BlsI	GCNGC	1 cut(s)	578
BmcAI	AGTACT	1 cut(s)	1111
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	1 cut(s)	27
BmiI	GGNNCC	1 cut(s)	118
BmsI	GCATC	3 cut(s)	497, 1030, 1150
BmtI	GCTAGC	1 cut(s)	147
BpiI	GAAGAC	2 cut(s)	709, 736
Bsa29I	ATCGAT	1 cut(s)	1016
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	3 cut(s)	99, 434, 873
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	182
BsaWI	WCCGGW	1 cut(s)	930
Bsc4I	CCNNNNNNNGG	2 cut(s)	258, 1163
Bse118I	RCCGGY	1 cut(s)	930
Bse3DI	GCAATG	1 cut(s)	223
Bse8I	GATNNNNATC	3 cut(s)	99, 434, 873
BseCI	ATCGAT	1 cut(s)	1016
BseDI	CCNNGG	1 cut(s)	182
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	3 cut(s)	99, 434, 873
BseLI	CCNNNNNNNGG	2 cut(s)	258, 1163
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	4 cut(s)	799, 802, 805, 808
BseXI	GCAGC	1 cut(s)	588
BseYI	CCCAGC	1 cut(s)	911
BsgI	GTGCAG	2 cut(s)	174, 309
Bsh1236I	CGCG	2 cut(s)	206, 748
BshTI	ACCGGT	1 cut(s)	930
BshVI	ATCGAT	1 cut(s)	1016
BsiHKAI	GWGCWC	1 cut(s)	1174
BsiSI	CCGG	1 cut(s)	931
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	258, 1163
BsmAI	GTCTC	3 cut(s)	130, 309, 1071
BsmFI	GGGAC	1 cut(s)	501
Bso31I	GGTCTC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	1174
Bsp19I	CCATGG	1 cut(s)	182
BspACI	CCGC	1 cut(s)	1031
BspCNI	CTCAG	1 cut(s)	68
BspDI	ATCGAT	1 cut(s)	1016
BspFNI	CGCG	2 cut(s)	206, 748
BspLI	GGNNCC	1 cut(s)	118
BspMAI	CTGCAG	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	147
BspPI	GGATC	4 cut(s)	788, 882, 945, 1021
BspTI	CTTAAG	2 cut(s)	752, 826
BspTNI	GGTCTC	1 cut(s)	309
BsrDI	GCAATG	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	930
BssAI	RCCGGY	1 cut(s)	930
BssECI	CCNNGG	1 cut(s)	182
BssNI	GRCGYC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	826
BstACI	GRCGYC	1 cut(s)	166
BstAFI	CTTAAG	2 cut(s)	752, 826
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	145, 1165
BstDEI	CTNAG	2 cut(s)	55, 856
BstDSI	CCRYGG	1 cut(s)	182
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	2 cut(s)	206, 748
BstMAI	GTCTC	3 cut(s)	130, 309, 1071
BstMWI	GCNNNNNNNGC	1 cut(s)	1169
BstNSI	RCATGY	3 cut(s)	332, 546, 716
BstSFI	CTRYAG	1 cut(s)	596
BstUI	CGCG	2 cut(s)	206, 748
BstV1I	GCAGC	1 cut(s)	588
BstV2I	GAAGAC	2 cut(s)	709, 736
BstX2I	RGATCY	1 cut(s)	874
BstYI	RGATCY	1 cut(s)	874
Bsu15I	ATCGAT	1 cut(s)	1016
BsuTUI	ATCGAT	1 cut(s)	1016
BtgI	CCRYGG	1 cut(s)	182
BtgZI	GCGATG	1 cut(s)	1017
BtsCI	GGATG	1 cut(s)	370
BtsI	GCAGTG	3 cut(s)	87, 321, 1174
BtsIMutI	CAGTG	3 cut(s)	87, 321, 1174
Cac8I	GCNNGC	2 cut(s)	145, 1165
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	930
Cfr13I	GGNCC	1 cut(s)	27
ClaI	ATCGAT	1 cut(s)	1016
CseI	GACGC	1 cut(s)	737
Csp6I	GTAC	2 cut(s)	393, 1110
CspAI	ACCGGT	1 cut(s)	930
CviAII	CATG	6 cut(s)	183, 329, 543, 637, 713, 1088
CviQI	GTAC	2 cut(s)	393, 1110
DdeI	CTNAG	2 cut(s)	55, 856
DraI	TTTAAA	1 cut(s)	1149
Eam1104I	CTCTTC	1 cut(s)	826
EarI	CTCTTC	1 cut(s)	826
Eco130I	CCWWGG	1 cut(s)	182
Eco31I	GGTCTC	1 cut(s)	309
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	3 cut(s)	471, 1134, 1179
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	182
FaeI	CATG	6 cut(s)	186, 332, 546, 640, 716, 1091
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	6 cut(s)	182, 328, 542, 636, 712, 1087
FblI	GTMKAC	1 cut(s)	359
Fnu4HI	GCNGC	1 cut(s)	577
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	577
FspBI	CTAG	2 cut(s)	144, 999
GluI	GCNGC	1 cut(s)	577
GsaI	CCCAGC	1 cut(s)	915
HapII	CCGG	1 cut(s)	931
HgaI	GACGC	1 cut(s)	737
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	186, 332, 546, 640, 716, 1091
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	2 cut(s)	958, 1079
HpaII	CCGG	1 cut(s)	931
HphI	GGTGA	2 cut(s)	66, 794
Hpy166II	GTNNAC	3 cut(s)	360, 498, 785
Hpy188I	TCNGA	3 cut(s)	31, 253, 691
Hpy188III	TCNNGA	4 cut(s)	422, 620, 1076, 1157
Hpy8I	GTNNAC	3 cut(s)	360, 498, 785
Hpy99I	CGWCG	3 cut(s)	168, 171, 364
HpyAV	CCTTC	1 cut(s)	829
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	4 cut(s)	67, 166, 494, 946
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1169
HpyF3I	CTNAG	2 cut(s)	55, 856
HpySE526I	ACGT	4 cut(s)	67, 166, 494, 946
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	6 cut(s)	186, 332, 546, 640, 716, 1091
LmnI	GCTCC	2 cut(s)	668, 735
Lsp1109I	GCAGC	1 cut(s)	588
LweI	GCATC	3 cut(s)	497, 1030, 1150
MaeI	CTAG	2 cut(s)	144, 999
MaeII	ACGT	4 cut(s)	67, 166, 494, 946
MaeIII	GTNAC	4 cut(s)	444, 632, 920, 942
MboII	GAAGA	5 cut(s)	439, 464, 709, 741, 813
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	1 cut(s)	874
MhlI	GDGCHC	1 cut(s)	1174
MluCI	AATT	9 cut(s)	39, 189, 270, 305, 460, 570, 888, 963, 1049
MluI	ACGCGT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	1073
MmeI	TCCRAC	3 cut(s)	533, 915, 991
MnlI	CCTC	8 cut(s)	64, 406, 820, 823, 826, 829, 856, 1164
MseI	TTAA	7 cut(s)	188, 192, 375, 411, 753, 827, 1148
MslI	CAYNNNNRTG	1 cut(s)	238
MspCI	CTTAAG	2 cut(s)	752, 826
MspI	CCGG	1 cut(s)	931
MunI	CAATTG	1 cut(s)	39
MvnI	CGCG	2 cut(s)	206, 748
MwoI	GCNNNNNNNGC	1 cut(s)	1169
NcoI	CCATGG	1 cut(s)	182
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	6 cut(s)	186, 332, 546, 640, 716, 1091
NlaIV	GGNNCC	1 cut(s)	118
NmuCI	GTSAC	3 cut(s)	632, 920, 942
NspI	RCATGY	3 cut(s)	332, 546, 716
PacI	TTAATTAA	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	958
PinAI	ACCGGT	1 cut(s)	930
PkrI	GCNGC	1 cut(s)	578
PleI	GAGTC	1 cut(s)	1073
PpsI	GAGTC	1 cut(s)	1073
Ppu21I	YACGTR	1 cut(s)	947
PshBI	ATTAAT	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	494
PspFI	CCCAGC	1 cut(s)	911
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	874
RsaI	GTAC	2 cut(s)	394, 1111
RsaNI	GTAC	2 cut(s)	393, 1110
RseI	CAYNNNNRTG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	358
SaqAI	TTAA	7 cut(s)	188, 192, 375, 411, 753, 827, 1148
SatI	GCNGC	1 cut(s)	577
Sau96I	GGNCC	1 cut(s)	27
ScaI	AGTACT	1 cut(s)	1111
SchI	GAGTC	1 cut(s)	1073
SduI	GDGCHC	1 cut(s)	1174
SfaNI	GCATC	3 cut(s)	497, 1030, 1150
SfcI	CTRYAG	1 cut(s)	596
SinI	GGWCC	1 cut(s)	27
SmiI	ATTTAAAT	1 cut(s)	1149
SmiMI	CAYNNNNRTG	1 cut(s)	238
SmlI	CTYRAG	2 cut(s)	752, 826
SmoI	CTYRAG	2 cut(s)	752, 826
Sse9I	AATT	9 cut(s)	39, 189, 270, 305, 460, 570, 888, 963, 1049
SsiI	CCGC	1 cut(s)	1031
SspMI	CTAG	2 cut(s)	144, 999
StyI	CCWWGG	1 cut(s)	182
SwaI	ATTTAAAT	1 cut(s)	1149
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	4 cut(s)	70, 169, 497, 949
TaqI	TCGA	8 cut(s)	163, 359, 441, 701, 961, 982, 1016, 1075
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	9 cut(s)	39, 189, 270, 305, 460, 570, 888, 963, 1049
TatI	WGTACW	1 cut(s)	1109
TfiI	GAWTC	1 cut(s)	958
Tru1I	TTAA	7 cut(s)	188, 192, 375, 411, 753, 827, 1148
Tru9I	TTAA	7 cut(s)	188, 192, 375, 411, 753, 827, 1148
TscAI	CASTG	3 cut(s)	94, 328, 1174
TseFI	GTSAC	3 cut(s)	632, 920, 942
TseI	GCWGC	1 cut(s)	576
Tsp45I	GTSAC	3 cut(s)	632, 920, 942
TspGWI	ACGGA	4 cut(s)	109, 377, 681, 748
TspRI	CASTG	3 cut(s)	94, 328, 1174
Vha464I	CTTAAG	2 cut(s)	752, 826
VpaK11BI	GGWCC	1 cut(s)	27
VspI	ATTAAT	1 cut(s)	375
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	4 cut(s)	270, 460, 570, 1049
XceI	RCATGY	3 cut(s)	332, 546, 716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XmiI	GTMKAC	1 cut(s)	359
XspI	CTAG	2 cut(s)	144, 999
ZraI	GACGTC	1 cut(s)	167
ZrmI	AGTACT	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.