Rroxscaffold_1G00043580

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000673
Physical Location & Seq
Reverse (-)
62186816 .. 62207028
20213 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00043580.1

Sequence Viewer

Length: 1056 bp
ATGATTCTGCACTCGAATTGCGATAGAAGCTGCTGGAGGGAACTACTTCTGGAGTGGGAAAACATCATCGCACATTTCGCACCATATATGCATATCTACGTGCATAGCAAGTGCTCAAGGTTCGAGCAAGAATCCATGAATTTGGGGGTTAGGAGAGATGATCAAAATCTAGATCACAGTTGTGCTCCACCAGATGTTTCTTCGAAAGAGACATTTCACGCAGTCCATGTTGAAGTCGTTTTGAGACATGTACACCATTTAAAGTGGGAGCTGTTCAGCATGCTCGTCCCTCACTTGGCCCATGTAAATCCGTATCGCAGTCTAATTCGCGAGACTGTGGAACTGCATGTGCCTCCATCAGTTTCGTGGCACTACGTTTCCAGAGAGGTAGAGGTAGCAGGCTTCTCGACCACTCCAACTTCTCTGGATTGTGTTATCTTTCTCCTGTGGAAAATTCATAAATGCAATGGTTATGATTCTGATCCTAATTACGAGGAGTGGGATGAGTTCTTTATAACCACATACAACAGAGAACATCGAAGCCAAAAGTATAGAAGTTGGAGTGTGCATGAACTTCCTCGTCGCAATCCCAAAAATAAGAAGTGGAAGTTCATCAAGGACGTGGCTTACATGGATGGAAGTTTCTATTGTGCTGTGGATATGAATTCAGAGGTTGTATTGGGTACCTTCAATCTAGCACTTCAAGAAGATCCCTTGAGACTACCATCTCGTCCAGAACTCATGAACTTGGTTAAATCTGATGAAGGGCTACTATTGACAGTTTGTTATAAGGAGCAAGATGGTGATGAATTTTTCTACCATATTTACCAGTTTGATTTGTCACGAAAAGAATGGACAAGAGTTAAAAGTTTAGGAAACCGAGTATTGATGTTGCATAGCCGTCCGTCAGTTGCGACTCCGGCGGTGGGGATGATCAGTAAATTCGCAAACATGATATTTGTCCGTGGCTTGAACTCTGACAGCTATGTTGCTTTTACTTGGGAAGTTGAAGGCGAATGGAGACGGCGGCAATTAGATAGCATTATATCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

41.41

Weight (kDa)

6.34

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 110 - 320 8.7e-13 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 515, 789
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 1 cut(s) 683
AccII CGCG 1 cut(s) 330
AciI CCGC 2 cut(s) 923, 1027
AclWI GGATC 2 cut(s) 476, 704
AcsI RAATTY 5 cut(s) 139, 453, 664, 809, 941
AfaI GTAC 2 cut(s) 252, 685
AfiI CCNNNNNNNGG 2 cut(s) 295, 926
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 5 cut(s) 233, 691, 704, 973, 1010
AjiI CACGTC 1 cut(s) 622
AleI CACNNNNGTG 1 cut(s) 180
AluBI AGCT 3 cut(s) 30, 271, 984
AluI AGCT 3 cut(s) 30, 271, 984
Alw21I GWGCWC 2 cut(s) 116, 187
Alw26I GTCTC 5 cut(s) 203, 238, 326, 712, 1015
AlwI GGATC 2 cut(s) 476, 704
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 5 cut(s) 139, 453, 664, 809, 941
Asp700I GAANNNNTTC 1 cut(s) 45
Asp718I GGTACC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 298
AsuHPI GGTGA 1 cut(s) 815
AsuII TTCGAA 1 cut(s) 203
BanI GGYRCC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 116, 187
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 364, 629, 733, 794
BceAI ACGGC 2 cut(s) 885, 1040
BcgI CGANNNNNNTGC 2 cut(s) 387, 421
BclI TGATCA 2 cut(s) 160, 933
BcoDI GTCTC 5 cut(s) 203, 238, 326, 712, 1015
BfaI CTAG 2 cut(s) 170, 695
BisI GCNGC 2 cut(s) 31, 1028
BlsI GCNGC 2 cut(s) 32, 1029
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 1 cut(s) 685
BpmI CTGGAG 2 cut(s) 55, 71
Bpu14I TTCGAA 1 cut(s) 203
BpuEI CTTGAG 2 cut(s) 100, 736
BsaAI YACGTR 1 cut(s) 100
BsaBI GATNNNNATC 2 cut(s) 165, 480
BsaJI CCNNGG 1 cut(s) 964
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 926
Bse1I ACTGG 1 cut(s) 829
Bse3DI GCAATG 1 cut(s) 472
Bse8I GATNNNNATC 2 cut(s) 165, 480
BseDI CCNNGG 1 cut(s) 964
BseGI GGATG 3 cut(s) 508, 640, 936
BseJI GATNNNNATC 2 cut(s) 165, 480
BseLI CCNNNNNNNGG 2 cut(s) 295, 926
BseMI GCAATG 1 cut(s) 472
BseNI ACTGG 1 cut(s) 829
BseRI GAGGAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 299
BshNI GGYRCC 1 cut(s) 683
BsiHKAI GWGCWC 2 cut(s) 116, 187
BsiSI CCGG 1 cut(s) 920
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 295, 926
BsmAI GTCTC 5 cut(s) 203, 238, 326, 712, 1015
BsmBI CGTCTC 1 cut(s) 1015
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 299
Bsp119I TTCGAA 1 cut(s) 203
Bsp1286I GDGCHC 2 cut(s) 116, 187
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 5 cut(s) 160, 172, 481, 709, 933
Bsp68I TCGCGA 1 cut(s) 330
BspACI CCGC 2 cut(s) 923, 1027
BspANI GGCC 1 cut(s) 299
BspFNI CGCG 1 cut(s) 330
BspHI TCATGA 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 685
BspPI GGATC 2 cut(s) 476, 704
BspT104I TTCGAA 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 472
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 829
BssECI CCNNGG 1 cut(s) 964
BssMI GATC 5 cut(s) 160, 172, 481, 709, 933
Bst4CI ACNGT 3 cut(s) 179, 337, 781
BstAUI TGTACA 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 203
BstC8I GCNNGC 2 cut(s) 281, 400
BstDEI CTNAG 1 cut(s) 1050
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 3 cut(s) 508, 640, 936
BstFNI CGCG 1 cut(s) 330
BstKTI GATC 5 cut(s) 163, 175, 484, 712, 936
BstMAI GTCTC 5 cut(s) 203, 238, 326, 712, 1015
BstMBI GATC 5 cut(s) 160, 172, 481, 709, 933
BstMWI GCNNNNNNNGC 3 cut(s) 27, 77, 920
BstNSI RCATGY 3 cut(s) 251, 283, 350
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 709
BstXI CCANNNNNNTGG 1 cut(s) 142
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 1 cut(s) 299
BtgI CCRYGG 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 52
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 3 cut(s) 508, 640, 936
BtuMI TCGCGA 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 281, 400
CciI TCATGA 1 cut(s) 741
Cfr13I GGNCC 1 cut(s) 298
Csp6I GTAC 2 cut(s) 251, 684
CviQI GTAC 2 cut(s) 251, 684
DdeI CTNAG 1 cut(s) 1050
DpnI GATC 5 cut(s) 162, 174, 483, 711, 935
DpnII GATC 5 cut(s) 160, 172, 481, 709, 933
DraI TTTAAA 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 664
EcoT22I ATGCAT 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 1015
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 2 cut(s) 160, 933
Fnu4HI GCNGC 2 cut(s) 31, 1028
FokI GGATG 3 cut(s) 515, 647, 943
Fsp4HI GCNGC 2 cut(s) 31, 1028
FspBI CTAG 2 cut(s) 170, 695
GluI GCNGC 2 cut(s) 31, 1028
GsuI CTGGAG 2 cut(s) 55, 71
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 920
HinfI GANTC 4 cut(s) 4, 131, 476, 916
HpaII CCGG 1 cut(s) 920
HphI GGTGA 1 cut(s) 815
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 4 cut(s) 481, 670, 760, 979
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 3 cut(s) 697, 758, 1004
HpyCH4III ACNGT 3 cut(s) 179, 337, 781
HpyCH4IV ACGT 3 cut(s) 99, 375, 621
HpyCH4V TGCA 7 cut(s) 10, 91, 103, 346, 465, 568, 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 77, 920
HpyF3I CTNAG 1 cut(s) 1050
HpySE526I ACGT 3 cut(s) 99, 375, 621
KpnI GGTACC 1 cut(s) 687
Ksp22I TGATCA 2 cut(s) 160, 933
Kzo9I GATC 5 cut(s) 160, 172, 481, 709, 933
LmnI GCTCC 3 cut(s) 190, 268, 793
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 2 cut(s) 170, 695
MaeII ACGT 3 cut(s) 99, 375, 621
MaeIII GTNAC 1 cut(s) 840
MalI GATC 5 cut(s) 162, 174, 483, 711, 935
MboI GATC 5 cut(s) 160, 172, 481, 709, 933
MboII GAAGA 2 cut(s) 192, 719
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 116, 187
MluCI AATT 9 cut(s) 16, 139, 324, 453, 487, 664, 809, 941, 1031
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 2 cut(s) 440, 539
MnlI CCTC 8 cut(s) 30, 300, 363, 379, 385, 487, 588, 664
Mph1103I ATGCAT 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 260, 753, 864
MslI CAYNNNNRTG 1 cut(s) 180
MspI CCGG 1 cut(s) 920
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 3 cut(s) 27, 77, 920
NdeII GATC 5 cut(s) 160, 172, 481, 709, 933
NlaIV GGNNCC 1 cut(s) 685
NmuCI GTSAC 1 cut(s) 840
NruI TCGCGA 1 cut(s) 330
NsiI ATGCAT 1 cut(s) 93
NspI RCATGY 3 cut(s) 251, 283, 350
NspV TTCGAA 1 cut(s) 203
OliI CACNNNNGTG 1 cut(s) 180
PaeI GCATGC 1 cut(s) 283
PagI TCATGA 1 cut(s) 741
PciI ACATGT 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 4, 131, 476
PkrI GCNGC 2 cut(s) 32, 1029
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
Ppu21I YACGTR 1 cut(s) 100
PscI ACATGT 1 cut(s) 247
PsiI TTATAA 2 cut(s) 515, 789
PspN4I GGNNCC 1 cut(s) 685
PspPI GGNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 709
RruI TCGCGA 1 cut(s) 330
RsaI GTAC 2 cut(s) 252, 685
RsaNI GTAC 2 cut(s) 251, 684
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 260, 753, 864
SatI GCNGC 2 cut(s) 31, 1028
Sau3AI GATC 5 cut(s) 160, 172, 481, 709, 933
Sau96I GGNCC 1 cut(s) 298
SchI GAGTC 1 cut(s) 910
SduI GDGCHC 2 cut(s) 116, 187
SfuI TTCGAA 1 cut(s) 203
SmiMI CAYNNNNRTG 1 cut(s) 180
SmlI CTYRAG 2 cut(s) 115, 715
SmoI CTYRAG 2 cut(s) 115, 715
SphI GCATGC 1 cut(s) 283
Sse9I AATT 9 cut(s) 16, 139, 324, 453, 487, 664, 809, 941, 1031
SsiI CCGC 2 cut(s) 923, 1027
SspMI CTAG 2 cut(s) 170, 695
TaaI ACNGT 3 cut(s) 179, 337, 781
TaiI ACGT 3 cut(s) 102, 378, 624
TaqI TCGA 5 cut(s) 14, 123, 203, 407, 538
TasI AATT 9 cut(s) 16, 139, 324, 453, 487, 664, 809, 941, 1031
TatI WGTACW 1 cut(s) 250
TauI GCSGC 1 cut(s) 1030
TfiI GAWTC 3 cut(s) 4, 131, 476
Tru1I TTAA 3 cut(s) 260, 753, 864
Tru9I TTAA 3 cut(s) 260, 753, 864
TseFI GTSAC 1 cut(s) 840
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 1 cut(s) 840
TspDTI ATGAA 8 cut(s) 152, 446, 585, 601, 677, 758, 777, 822
TspGWI ACGGA 3 cut(s) 300, 894, 953
XapI RAATTY 5 cut(s) 139, 453, 664, 809, 941
XbaI TCTAGA 1 cut(s) 169
XceI RCATGY 3 cut(s) 251, 283, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 2 cut(s) 170, 695
Zsp2I ATGCAT 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.