Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000673

Physical Location & Seq

Genomic Coordinates Forward (+)

33889196 .. 33890569

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00311360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGTGGTGGAGGATGTGGAGATTGACTGTGGTGGTGAGGTTTCAACGAGGGAGTTTAGGAGGCGTTTGAGATTTAGAAGAGACAATCTCTGTTATGCTGGAAGCCACGGCTTGGATATATCGACCCCATCAGCCTCTTCAAAATATAGTAACCATAAGCATCAATCTAGAACCACTGATGGAAAATGTGACGTTGCTTATGCAGATGAAACTTTTTACTGTGCTTTCCATTCTTTCGAATTTGTAGTGATGGGTACCTTCAGCGTTGCACTCCAACGTTTTACCATAGATCCTTCCCTTTTTTTAGGACTTGATGGTTTTGATCACCTGTACCTTGTTGAGTTTGGTGGAGATCTCTATTCCATTCCTATTACGCATGGTGTTTGTCATGTTTACCAGCTTGATCGGTCACGAAAAGTATGGACTCGAATCAAAAGCCTGGGAAATCGAGTTCTGATTTTGTGTGACCGCTCGTCAAGGATTGTAATTCCTGCCGTGGGAGAAGCTGAGGAATATGCAGACATGATATTTTTGTATGGAAACGACCAGCGACTGGCCTTTGTTAGTGACACTGAAGGCTCCTGGAGACTTAACAAACAACATGATTTAGGAGATTCCTTGAGAGACTGTATTTGTTTTCAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Trehalose_PPase

Protein Analysis

215

Amino Acids

24.49

Weight (kDa)

5.73

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_KIB1-4	PF03478	47 - 162	3.4e-09	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000673)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26661 FvH4_2g26662 FvH4_3g21700 FvH4_3g21711 FvH4_3g21801 FvH4_4g17781 FvH4_4g20671 FvH4_5g08112 FvH4_5g19010
pyrus_communis	pycom11g20050 pycom12g20870
rosa_chinensis	RchiOBHm_Chr3g0473991 RchiOBHm_Chr6g0295501
rosa_laevigata	RLG00000011844 RLG00000011846 RLG00000011847 RLG00000023960 RLG00000025447 RLG00000025455 RLG00000027507 RLG00000029040 RLG00000033754 RLG00000033763 RLG00000033780 RLG00000033784
rosa_multiflora	Rmu_co8461177.1_g000001 Rmu_sc0000006.1_g000007 Rmu_sc0000475.1_g000005 Rmu_sc0001331.1_g000009 Rmu_sc0001576.1_g000022 Rmu_sc0002271.1_g000033 Rmu_sc0002414.1_g000009 Rmu_sc0002521.1_g000001 Rmu_sc0003170.1_g000006 Rmu_sc0003854.1_g000002 Rmu_sc0004190.1_g000002 Rmu_sc0005137.1_g000016 Rmu_sc0006633.1_g000002 Rmu_sc0012290.1_g000003 Rmu_sc0022254.1_g000001 Rmu_sc0027615.1_g000003
rosa_roxburghii	Rroxscaffold_1G00043510 Rroxscaffold_1G00043580 Rroxscaffold_1G00043780 Rroxscaffold_3G00266190 Rroxscaffold_4G00311360 Rroxscaffold_5G00368090 Rroxscaffold_6G00407580 Rroxscaffold_6G00425070 Rroxscaffold_6G00425130 Rroxscaffold_7G00173050
rosa_rugosa	Rorug02G0654500 Rorug04G0209000
rosa_samantha	Rh1AG322000 Rh1BG144900 Rh2CG355900 Rh3BG060900 Rh3BG216400 Rh3DG212200 Rh4CG284500 Rh5AG254200 Rh5BG255100 Rh5BG256200 Rh5CG287800 Rh5CG289200 Rh5CG289300 Rh6AG364700 Rh6BG366800 Rh6DG360500 Rh7AG097700 Rh7BG098700 Rh7CG099600
rosa_wichuraiana	Rw3G004540 Rw5G023530 Rw6G031400 Rw6G031850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	254
AccB1I	GGYRCC	1 cut(s)	254
AccB7I	CCANNNNNTGG	2 cut(s)	112, 553
AccBSI	CCGCTC	1 cut(s)	471
AciI	CCGC	1 cut(s)	469
AclI	AACGTT	1 cut(s)	277
AclWI	GGATC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	2 cut(s)	244, 594
AfaI	GTAC	2 cut(s)	256, 332
AfiI	CCNNNNNNNGG	3 cut(s)	112, 497, 553
AgsI	TTSAA	2 cut(s)	45, 141
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	2 cut(s)	438, 581
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
AluBI	AGCT	2 cut(s)	400, 506
AluI	AGCT	2 cut(s)	400, 506
Alw26I	GTCTC	3 cut(s)	75, 580, 618
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	553
AoxI	GGCC	2 cut(s)	555, 642
ApoI	RAATTY	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	47, 317
AsuII	TTCGAA	1 cut(s)	237
BanI	GGYRCC	1 cut(s)	254
BbvCI	CCTCAGC	1 cut(s)	507
BccI	CCATC	4 cut(s)	136, 173, 244, 308
BceAI	ACGGC	2 cut(s)	124, 479
BciT130I	CCWGG	2 cut(s)	440, 583
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	3 cut(s)	75, 580, 618
BfaI	CTAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	352
Bme1390I	CCNGG	2 cut(s)	440, 583
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmiI	GGNNCC	2 cut(s)	256, 580
BmrFI	CCNGG	2 cut(s)	440, 583
BmsI	GCATC	1 cut(s)	169
BplI	GAGNNNNNCTC	2 cut(s)	72, 104
BpmI	CTGGAG	1 cut(s)	604
Bpu10I	CCTNAGC	1 cut(s)	507
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	640
BsaJI	CCNNGG	3 cut(s)	106, 439, 495
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 497, 553
Bse1I	ACTGG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	440, 583
BseDI	CCNNGG	3 cut(s)	106, 439, 495
BseGI	GGATG	1 cut(s)	19
BseLI	CCNNNNNNNGG	3 cut(s)	112, 497, 553
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	558
BshFI	GGCC	2 cut(s)	557, 644
BshNI	GGYRCC	1 cut(s)	254
BslI	CCNNNNNNNGG	3 cut(s)	112, 497, 553
BsmAI	GTCTC	3 cut(s)	75, 580, 618
BsnI	GGCC	2 cut(s)	557, 644
Bsp119I	TTCGAA	1 cut(s)	237
Bsp143I	GATC	4 cut(s)	289, 322, 352, 403
BspACI	CCGC	1 cut(s)	469
BspANI	GGCC	2 cut(s)	557, 644
BspCNI	CTCAG	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	256, 580
BspPI	GGATC	1 cut(s)	284
BspT104I	TTCGAA	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	254
BsrBI	CCGCTC	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	558
BssECI	CCNNGG	3 cut(s)	106, 439, 495
BssMI	GATC	4 cut(s)	289, 322, 352, 403
Bst2UI	CCWGG	2 cut(s)	440, 583
Bst4CI	ACNGT	3 cut(s)	29, 221, 629
Bst6I	CTCTTC	2 cut(s)	73, 142
BstBI	TTCGAA	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	507
BstDSI	CCRYGG	2 cut(s)	106, 495
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	4 cut(s)	292, 325, 355, 406
BstMAI	GTCTC	3 cut(s)	75, 580, 618
BstMBI	GATC	4 cut(s)	289, 322, 352, 403
BstNI	CCWGG	2 cut(s)	440, 583
BstSCI	CCNGG	2 cut(s)	438, 581
BstX2I	RGATCY	2 cut(s)	289, 352
BstYI	RGATCY	2 cut(s)	289, 352
BsuRI	GGCC	2 cut(s)	557, 644
BtgI	CCRYGG	2 cut(s)	106, 495
BtsCI	GGATG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	174, 570
CaiI	CAGNNNCTG	1 cut(s)	553
Csp6I	GTAC	2 cut(s)	255, 331
CviAII	CATG	4 cut(s)	377, 389, 523, 602
CviJI	RGCY	9 cut(s)	105, 111, 134, 400, 438, 506, 557, 579, 644
CviKI_1	RGCY	9 cut(s)	105, 111, 134, 400, 438, 506, 557, 579, 644
CviQI	GTAC	2 cut(s)	255, 331
DdeI	CTNAG	1 cut(s)	507
DpnI	GATC	4 cut(s)	291, 324, 354, 405
DpnII	GATC	4 cut(s)	289, 322, 352, 403
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	73, 142
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	2 cut(s)	73, 142
Eco147I	AGGCCT	1 cut(s)	644
Eco57I	CTGAAG	2 cut(s)	244, 594
EcoRII	CCWGG	2 cut(s)	438, 581
FaeI	CATG	4 cut(s)	380, 392, 526, 605
FatI	CATG	4 cut(s)	376, 388, 522, 601
FbaI	TGATCA	1 cut(s)	322
FokI	GGATG	1 cut(s)	26
FspBI	CTAG	1 cut(s)	168
GsuI	CTGGAG	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	557, 644
Hin1II	CATG	4 cut(s)	380, 392, 526, 605
HinfI	GANTC	3 cut(s)	424, 429, 614
HphI	GGTGA	2 cut(s)	47, 317
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	1 cut(s)	456
Hpy188III	TCNNGA	2 cut(s)	168, 411
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	268, 303, 569
HpyCH4III	ACNGT	3 cut(s)	29, 221, 629
HpyCH4IV	ACGT	2 cut(s)	192, 277
HpyCH4V	TGCA	3 cut(s)	203, 269, 518
HpyF3I	CTNAG	1 cut(s)	507
HpySE526I	ACGT	2 cut(s)	192, 277
Hsp92II	CATG	4 cut(s)	380, 392, 526, 605
KpnI	GGTACC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	4 cut(s)	289, 322, 352, 403
LmnI	GCTCC	1 cut(s)	584
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	2 cut(s)	192, 277
MaeIII	GTNAC	5 cut(s)	149, 188, 408, 464, 566
MalI	GATC	4 cut(s)	291, 324, 354, 405
MbiI	CCGCTC	1 cut(s)	471
MboI	GATC	4 cut(s)	289, 322, 352, 403
MboII	GAAGA	2 cut(s)	90, 129
MflI	RGATCY	2 cut(s)	289, 352
MluCI	AATT	2 cut(s)	239, 486
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	4, 31, 42, 54, 145, 502
MseI	TTAA	1 cut(s)	591
MspR9I	CCNGG	2 cut(s)	440, 583
MvaI	CCWGG	2 cut(s)	440, 583
NdeII	GATC	4 cut(s)	289, 322, 352, 403
NlaIII	CATG	4 cut(s)	380, 392, 526, 605
NlaIV	GGNNCC	2 cut(s)	256, 580
NmuCI	GTSAC	4 cut(s)	188, 408, 464, 566
NspV	TTCGAA	1 cut(s)	237
PceI	AGGCCT	1 cut(s)	644
PfeI	GAWTC	2 cut(s)	429, 614
PflMI	CCANNNNNTGG	2 cut(s)	112, 553
PfoI	TCCNGGA	1 cut(s)	581
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
Psp1406I	AACGTT	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	438, 581
PspGI	CCWGG	2 cut(s)	438, 581
PspN4I	GGNNCC	2 cut(s)	256, 580
PstNI	CAGNNNCTG	1 cut(s)	553
PsuI	RGATCY	2 cut(s)	289, 352
RsaI	GTAC	2 cut(s)	256, 332
RsaNI	GTAC	2 cut(s)	255, 331
SaqAI	TTAA	1 cut(s)	591
Sau3AI	GATC	4 cut(s)	289, 322, 352, 403
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	2 cut(s)	440, 583
SetI	ASST	8 cut(s)	42, 195, 260, 280, 330, 336, 402, 508
SfaNI	GCATC	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
Sse9I	AATT	2 cut(s)	239, 486
SseBI	AGGCCT	1 cut(s)	644
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	644
StyD4I	CCNGG	2 cut(s)	438, 581
TaaI	ACNGT	3 cut(s)	29, 221, 629
TaiI	ACGT	2 cut(s)	195, 280
TaqI	TCGA	4 cut(s)	122, 237, 427, 448
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	2 cut(s)	239, 486
TfiI	GAWTC	2 cut(s)	429, 614
Tru1I	TTAA	1 cut(s)	591
Tru9I	TTAA	1 cut(s)	591
TscAI	CASTG	2 cut(s)	181, 577
TseFI	GTSAC	4 cut(s)	188, 408, 464, 566
Tsp45I	GTSAC	4 cut(s)	188, 408, 464, 566
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	181, 577
Van91I	CCANNNNNTGG	2 cut(s)	112, 553
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	167
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.