Rh7AG097700

F-box kelch-repeat protein At1g57790-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000673
Physical Location & Seq
Forward (+)
7435690 .. 7436850
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG097700.1

Sequence Viewer

Length: 1134 bp
ATGTCTTCTTGGTCTGATCTTTCGTTTGACATCTTACGTTCAATCGCCGAATGCCTCCCATATACTGATCTCTTTCGCTTCGGCGCCGTGTGCAAGAGTTGGAGAGATTGTGTGGTACGTGGGATTCATTACGCCCCAATCATAATTAGGTACTGTTCTTACCAACAGGAATATGCACTAGAGCTCGTTGATCTCTTGCGCATGCAGTATAACCGTATCGGAAACATGAATATCCGTCAAGGACATCAGCTCTTTGGTTGCTGTCTTCATGCTTCGAAACACGGTTGGTTGCTTTTATCAAAACCACAAGAAGGAAAGTGTTATTCATTCTTTTTCTTTGACCCTCTAGCAGGCAAAACTATAGAACTACCTTCACTGAACAAGGACGGCAAGTTTGATAATGAAGAAGATGTTAAGGTAGCAGCTACCTTTTCGACTAGTCCAACTCATTATGATGATTGTGTCATCTTTGTGGTCTTACACAGAAGTACTGATGGTCAACGTTCTACGAGCAAACATTGTTTTATAAGCACATGTAACCTCAATAATAAAAGATGGATTACTCGAAACTACTCTCGCCCTCAAGATAACGAAGTTGAGGCCTTAGCTTGTGTGGATGGAGTTTTCCACTGTGTTTTTTCCCGGGGAGTCTTGTCATTAATATTTGCTACCTTCCATGTATCCTCTGAAGACTGGGTCATGACAGACTATTCCGCCTTTTCGAAAATACAACGTTTTAAGTTTCCAGGGAAGTATTACTTAGTTGAGGCCGGTGGGGAGCTCTTATTTGCATTTTATGGTTTAGATCACAGTTTTGATGGGCATGGAGAAAGACCTTACTGGCATATCTACCAGTTTGATCGGTCACAGAAAAATTGGACTAGAGTTTTAGAGTTAGGGAACCGAGCATTACTCTTATATGGCACATCATCCTCCATTATCATGAGTCTGGCAGAGGGGGAAACTAGGGAAATTGCAGACAAGGTTTTTCGTTTTGATTATGAGTGGAGGCACTGCACTACCTGGATTGATAATAATAAAGGTGAGCTACTTTGTCCTTCGGATAAAAAGAGCCGGTCTAGGGAGCAACTCACAAAAATCACCTTTACCTATCGACACTTTGGTTTTAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

377

Amino Acids

43.91

Weight (kDa)

7.89

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 38 2.7e-08 F-box domain
Beta-prop_KIB1-4 PF03478 86 - 315 2.2e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 527
Acc16I TGCGCA 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 1 cut(s) 714
AclI AACGTT 2 cut(s) 502, 733
AcuI CTGAAG 1 cut(s) 708
AcyI GRCGYC 1 cut(s) 84
AfaI GTAC 3 cut(s) 117, 152, 490
AfiI CCNNNNNNNGG 3 cut(s) 311, 350, 1081
AflIII ACRYGT 1 cut(s) 533
AgsI TTSAA 1 cut(s) 42
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 2 cut(s) 745, 1022
AluBI AGCT 6 cut(s) 184, 250, 425, 608, 781, 1048
AluI AGCT 6 cut(s) 184, 250, 425, 608, 781, 1048
Alw21I GWGCWC 2 cut(s) 186, 783
Ama87I CYCGRG 1 cut(s) 642
AoxI GGCC 2 cut(s) 600, 768
ApeKI GCWGC 1 cut(s) 422
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AseI ATTAAT 1 cut(s) 659
AspLEI GCGC 2 cut(s) 86, 201
AsuC2I CCSGG 2 cut(s) 643, 644
AsuHPI GGTGA 2 cut(s) 1055, 1093
AsuII TTCGAA 2 cut(s) 275, 722
AvaI CYCGRG 1 cut(s) 642
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 2 cut(s) 186, 783
BbsI GAAGAC 2 cut(s) 257, 696
Bbv12I GWGCWC 2 cut(s) 186, 783
BbvI GCAGC 1 cut(s) 434
BccI CCATC 4 cut(s) 488, 549, 611, 812
BceAI ACGGC 2 cut(s) 71, 403
BciT130I CCWGG 2 cut(s) 747, 1024
BciVI GTATCC 1 cut(s) 691
BcnI CCSGG 2 cut(s) 643, 644
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 6 cut(s) 179, 347, 438, 882, 966, 1080
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 87
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 1 cut(s) 423
BlsI GCNGC 1 cut(s) 424
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 4 cut(s) 643, 644, 747, 1024
BmeT110I CYCGRG 1 cut(s) 642
BmiI GGNNCC 2 cut(s) 85, 902
BmrFI CCNGG 4 cut(s) 643, 644, 747, 1024
BmrI ACTGGG 1 cut(s) 703
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 2 cut(s) 257, 696
BplI GAGNNNNNCTC 2 cut(s) 897, 929
Bpu10I CCTNAGC 1 cut(s) 604
Bpu14I TTCGAA 2 cut(s) 275, 722
BpuEI CTTGAG 1 cut(s) 567
BpuMI CCSGG 2 cut(s) 643, 644
BsaAI YACGTR 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 642, 643, 746
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 350, 1081
Bse118I RCCGGY 2 cut(s) 770, 1074
Bse1I ACTGG 3 cut(s) 698, 845, 853
BseBI CCWGG 2 cut(s) 747, 1024
BseDI CCNNGG 3 cut(s) 642, 643, 746
BseGI GGATG 2 cut(s) 622, 929
BseLI CCNNNNNNNGG 3 cut(s) 311, 350, 1081
BseNI ACTGG 3 cut(s) 698, 845, 853
BseXI GCAGC 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 1000
BshFI GGCC 2 cut(s) 602, 770
BshNI GGYRCC 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 186, 783
BsiHKCI CYCGRG 1 cut(s) 642
BsiSI CCGG 3 cut(s) 643, 771, 1075
BslI CCNNNNNNNGG 3 cut(s) 311, 350, 1081
BsmI GAATGC 1 cut(s) 56
BsnI GGCC 2 cut(s) 602, 770
BsoBI CYCGRG 1 cut(s) 642
Bsp119I TTCGAA 2 cut(s) 275, 722
Bsp1286I GDGCHC 2 cut(s) 186, 783
Bsp143I GATC 5 cut(s) 16, 67, 190, 805, 859
BspACI CCGC 1 cut(s) 714
BspANI GGCC 2 cut(s) 602, 770
BspHI TCATGA 2 cut(s) 699, 942
BspLI GGNNCC 2 cut(s) 85, 902
BspT104I TTCGAA 2 cut(s) 275, 722
BspT107I GGYRCC 1 cut(s) 83
BsrFI RCCGGY 2 cut(s) 770, 1074
BsrI ACTGG 3 cut(s) 698, 845, 853
BssAI RCCGGY 2 cut(s) 770, 1074
BssECI CCNNGG 3 cut(s) 642, 643, 746
BssMI GATC 5 cut(s) 16, 67, 190, 805, 859
BssNI GRCGYC 1 cut(s) 84
Bst2UI CCWGG 2 cut(s) 747, 1024
Bst4CI ACNGT 5 cut(s) 155, 215, 284, 632, 812
BstACI GRCGYC 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 119
BstBI TTCGAA 2 cut(s) 275, 722
BstC8I GCNNGC 2 cut(s) 203, 352
BstDEI CTNAG 2 cut(s) 604, 760
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 622, 929
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 201
BstKTI GATC 5 cut(s) 19, 70, 193, 808, 862
BstMBI GATC 5 cut(s) 16, 67, 190, 805, 859
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstNI CCWGG 2 cut(s) 747, 1024
BstNSI RCATGY 2 cut(s) 205, 537
BstSCI CCNGG 4 cut(s) 641, 642, 745, 1022
BstSFI CTRYAG 1 cut(s) 360
BstV1I GCAGC 1 cut(s) 434
BstV2I GAAGAC 2 cut(s) 257, 696
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 2 cut(s) 602, 770
BtsCI GGATG 2 cut(s) 622, 929
BtsI GCAGTG 1 cut(s) 1012
BtsIMutI CAGTG 3 cut(s) 374, 628, 1012
Cac8I GCNNGC 2 cut(s) 203, 352
CciI TCATGA 2 cut(s) 699, 942
CfoI GCGC 2 cut(s) 86, 201
Cfr10I RCCGGY 2 cut(s) 770, 1074
Cfr9I CCCGGG 1 cut(s) 642
Csp6I GTAC 3 cut(s) 116, 151, 489
CviAII CATG 8 cut(s) 202, 226, 269, 534, 677, 700, 824, 943
CviJI RGCY 9 cut(s) 184, 250, 425, 602, 608, 770, 781, 1048, 1074
CviKI_1 RGCY 9 cut(s) 184, 250, 425, 602, 608, 770, 781, 1048, 1074
CviQI GTAC 3 cut(s) 116, 151, 489
DdeI CTNAG 2 cut(s) 604, 760
DinI GGCGCC 1 cut(s) 85
DpnI GATC 5 cut(s) 18, 69, 192, 807, 861
DpnII GATC 5 cut(s) 16, 67, 190, 805, 859
EciI GGCGGA 1 cut(s) 703
Ecl136II GAGCTC 2 cut(s) 184, 781
Eco147I AGGCCT 1 cut(s) 602
Eco24I GRGCYC 2 cut(s) 186, 783
Eco53kI GAGCTC 2 cut(s) 184, 781
Eco57I CTGAAG 1 cut(s) 708
Eco88I CYCGRG 1 cut(s) 642
EcoICRI GAGCTC 2 cut(s) 184, 781
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRII CCWGG 2 cut(s) 745, 1022
EcoT38I GRGCYC 2 cut(s) 186, 783
EgeI GGCGCC 1 cut(s) 85
EheI GGCGCC 1 cut(s) 85
FaeI CATG 8 cut(s) 205, 229, 272, 537, 680, 703, 827, 946
FalI AAGNNNNNCTT 2 cut(s) 743, 775
FatI CATG 8 cut(s) 201, 225, 268, 533, 676, 699, 823, 942
Fnu4HI GCNGC 1 cut(s) 423
FokI GGATG 2 cut(s) 629, 916
FriOI GRGCYC 2 cut(s) 186, 783
Fsp4HI GCNGC 1 cut(s) 423
FspBI CTAG 6 cut(s) 179, 347, 438, 882, 966, 1080
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 85, 200
GluI GCNGC 1 cut(s) 423
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 602, 770
HapII CCGG 3 cut(s) 643, 771, 1075
HhaI GCGC 2 cut(s) 86, 201
Hin1I GRCGYC 1 cut(s) 84
Hin1II CATG 8 cut(s) 205, 229, 272, 537, 680, 703, 827, 946
Hin6I GCGC 2 cut(s) 84, 199
HinP1I GCGC 2 cut(s) 84, 199
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HinfI GANTC 3 cut(s) 124, 648, 946
HpaII CCGG 3 cut(s) 643, 771, 1075
HphI GGTGA 2 cut(s) 1055, 1093
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 4 cut(s) 16, 221, 688, 1063
Hpy188III TCNNGA 3 cut(s) 584, 700, 943
Hpy8I GTNNAC 1 cut(s) 500
HpyAV CCTTC 4 cut(s) 305, 381, 682, 1068
HpyCH4III ACNGT 5 cut(s) 155, 215, 284, 632, 812
HpyCH4IV ACGT 4 cut(s) 37, 118, 502, 733
HpyCH4V TGCA 6 cut(s) 93, 176, 205, 791, 977, 1017
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 2 cut(s) 604, 760
HpySE526I ACGT 4 cut(s) 37, 118, 502, 733
Hsp92I GRCGYC 1 cut(s) 84
Hsp92II CATG 8 cut(s) 205, 229, 272, 537, 680, 703, 827, 946
HspAI GCGC 2 cut(s) 84, 199
KasI GGCGCC 1 cut(s) 83
Kzo9I GATC 5 cut(s) 16, 67, 190, 805, 859
LmnI GCTCC 2 cut(s) 778, 1084
Lsp1109I GCAGC 1 cut(s) 434
MaeI CTAG 6 cut(s) 179, 347, 438, 882, 966, 1080
MaeII ACGT 4 cut(s) 37, 118, 502, 733
MaeIII GTNAC 2 cut(s) 536, 864
MalI GATC 5 cut(s) 18, 69, 192, 807, 861
MboI GATC 5 cut(s) 16, 67, 190, 805, 859
MboII GAAGA 4 cut(s) 257, 416, 419, 701
MhlI GDGCHC 2 cut(s) 186, 783
MluCI AATT 3 cut(s) 144, 874, 972
Mly113I GGCGCC 1 cut(s) 84
MlyI GAGTC 2 cut(s) 657, 955
MmeI TCCRAC 2 cut(s) 80, 467
MseI TTAA 3 cut(s) 414, 659, 738
MslI CAYNNNNRTG 3 cut(s) 453, 470, 941
MspI CCGG 3 cut(s) 643, 771, 1075
MspR9I CCNGG 4 cut(s) 643, 644, 747, 1024
Mva1269I GAATGC 1 cut(s) 56
MvaI CCWGG 2 cut(s) 747, 1024
MwoI GCNNNNNNNGC 1 cut(s) 90
NarI GGCGCC 1 cut(s) 84
NciI CCSGG 2 cut(s) 643, 644
NdeII GATC 5 cut(s) 16, 67, 190, 805, 859
NlaIII CATG 8 cut(s) 205, 229, 272, 537, 680, 703, 827, 946
NlaIV GGNNCC 2 cut(s) 85, 902
NmuCI GTSAC 1 cut(s) 864
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 2 cut(s) 205, 537
NspV TTCGAA 2 cut(s) 275, 722
PaeI GCATGC 1 cut(s) 205
PagI TCATGA 2 cut(s) 699, 942
PceI AGGCCT 1 cut(s) 602
PciI ACATGT 1 cut(s) 533
PctI GAATGC 1 cut(s) 56
PfeI GAWTC 1 cut(s) 124
PflFI GACNNNGTC 1 cut(s) 695
PkrI GCNGC 1 cut(s) 424
PleI GAGTC 2 cut(s) 656, 954
PluTI GGCGCC 1 cut(s) 87
PpsI GAGTC 2 cut(s) 656, 954
Ppu21I YACGTR 1 cut(s) 119
PscI ACATGT 1 cut(s) 533
PshBI ATTAAT 1 cut(s) 659
PsiI TTATAA 1 cut(s) 527
Psp124BI GAGCTC 2 cut(s) 186, 783
Psp1406I AACGTT 2 cut(s) 502, 733
Psp6I CCWGG 2 cut(s) 745, 1022
PspGI CCWGG 2 cut(s) 745, 1022
PspN4I GGNNCC 2 cut(s) 85, 902
PsyI GACNNNGTC 1 cut(s) 695
RsaI GTAC 3 cut(s) 117, 152, 490
RsaNI GTAC 3 cut(s) 116, 151, 489
RseI CAYNNNNRTG 3 cut(s) 453, 470, 941
SacI GAGCTC 2 cut(s) 186, 783
SaqAI TTAA 3 cut(s) 414, 659, 738
SatI GCNGC 1 cut(s) 423
Sau3AI GATC 5 cut(s) 16, 67, 190, 805, 859
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 2 cut(s) 657, 955
ScrFI CCNGG 4 cut(s) 643, 644, 747, 1024
SduI GDGCHC 2 cut(s) 186, 783
SfcI CTRYAG 1 cut(s) 360
SfoI GGCGCC 1 cut(s) 85
SfuI TTCGAA 2 cut(s) 275, 722
SmaI CCCGGG 1 cut(s) 644
SmiMI CAYNNNNRTG 3 cut(s) 453, 470, 941
SmlI CTYRAG 1 cut(s) 582
SmoI CTYRAG 1 cut(s) 582
SpeI ACTAGT 1 cut(s) 437
SphI GCATGC 1 cut(s) 205
Sse9I AATT 3 cut(s) 144, 874, 972
SseBI AGGCCT 1 cut(s) 602
SsiI CCGC 1 cut(s) 714
SspDI GGCGCC 1 cut(s) 83
SspI AATATT 1 cut(s) 663
SspMI CTAG 6 cut(s) 179, 347, 438, 882, 966, 1080
SstI GAGCTC 2 cut(s) 186, 783
StuI AGGCCT 1 cut(s) 602
StyD4I CCNGG 4 cut(s) 641, 642, 745, 1022
TaaI ACNGT 5 cut(s) 155, 215, 284, 632, 812
TaiI ACGT 4 cut(s) 40, 121, 505, 736
TaqI TCGA 5 cut(s) 275, 434, 565, 722, 1114
TaqII GACCGA 1 cut(s) 852
TasI AATT 3 cut(s) 144, 874, 972
TatI WGTACW 1 cut(s) 488
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 3 cut(s) 414, 659, 738
Tru9I TTAA 3 cut(s) 414, 659, 738
TscAI CASTG 3 cut(s) 381, 635, 1019
TseFI GTSAC 1 cut(s) 864
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 864
TspDTI ATGAA 5 cut(s) 116, 242, 257, 315, 417
TspGWI ACGGA 1 cut(s) 224
TspMI CCCGGG 1 cut(s) 642
TspRI CASTG 3 cut(s) 381, 635, 1019
Tth111I GACNNNGTC 1 cut(s) 695
VspI ATTAAT 1 cut(s) 659
XagI CCTNNNNNAGG 1 cut(s) 348
XceI RCATGY 2 cut(s) 205, 537
XmaI CCCGGG 1 cut(s) 642
XspI CTAG 6 cut(s) 179, 347, 438, 882, 966, 1080
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.